data_5TC3 # _model_server_result.job_id Ug_WPPzY8tty2qqktP1UcA _model_server_result.datetime_utc '2024-11-18 05:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":600}' # _entry.id 5TC3 # _exptl.entry_id 5TC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TC3 _cell.length_a 147.88 _cell.length_b 147.88 _cell.length_c 103.542 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 5TC3 _atom_sites.fract_transf_matrix[1][1] 0.006762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 600 600 5GP 5GP . D 3 ATP A 1 601 601 ATP ATP . E 4 GDP A 1 602 602 GDP GDP . F 4 GDP A 1 603 603 GDP GDP . G 5 ACT A 1 604 604 ACT ACT . H 2 5GP B 1 600 600 5GP 5GP . I 3 ATP B 1 601 601 ATP ATP . J 4 GDP B 1 602 602 GDP GDP . K 4 GDP B 1 603 603 GDP GDP . L 6 HOH A 1 701 25 HOH HOH . L 6 HOH A 2 702 36 HOH HOH . L 6 HOH A 3 703 16 HOH HOH . L 6 HOH A 4 704 20 HOH HOH . L 6 HOH A 5 705 17 HOH HOH . L 6 HOH A 6 706 23 HOH HOH . L 6 HOH A 7 707 7 HOH HOH . L 6 HOH A 8 708 1 HOH HOH . L 6 HOH A 9 709 12 HOH HOH . L 6 HOH A 10 710 2 HOH HOH . L 6 HOH A 11 711 24 HOH HOH . L 6 HOH A 12 712 21 HOH HOH . L 6 HOH A 13 713 37 HOH HOH . L 6 HOH A 14 714 43 HOH HOH . L 6 HOH A 15 715 46 HOH HOH . L 6 HOH A 16 716 39 HOH HOH . L 6 HOH A 17 717 41 HOH HOH . L 6 HOH A 18 718 19 HOH HOH . L 6 HOH A 19 719 22 HOH HOH . L 6 HOH A 20 720 47 HOH HOH . L 6 HOH A 21 721 49 HOH HOH . L 6 HOH A 22 722 53 HOH HOH . L 6 HOH A 23 723 40 HOH HOH . L 6 HOH A 24 724 52 HOH HOH . L 6 HOH A 25 725 51 HOH HOH . L 6 HOH A 26 726 45 HOH HOH . L 6 HOH A 27 727 44 HOH HOH . L 6 HOH A 28 728 48 HOH HOH . M 6 HOH B 1 701 8 HOH HOH . M 6 HOH B 2 702 13 HOH HOH . M 6 HOH B 3 703 27 HOH HOH . M 6 HOH B 4 704 15 HOH HOH . M 6 HOH B 5 705 3 HOH HOH . M 6 HOH B 6 706 6 HOH HOH . M 6 HOH B 7 707 11 HOH HOH . M 6 HOH B 8 708 31 HOH HOH . M 6 HOH B 9 709 30 HOH HOH . M 6 HOH B 10 710 29 HOH HOH . M 6 HOH B 11 711 5 HOH HOH . M 6 HOH B 12 712 14 HOH HOH . M 6 HOH B 13 713 26 HOH HOH . M 6 HOH B 14 714 28 HOH HOH . M 6 HOH B 15 715 9 HOH HOH . M 6 HOH B 16 716 32 HOH HOH . M 6 HOH B 17 717 10 HOH HOH . M 6 HOH B 18 718 34 HOH HOH . M 6 HOH B 19 719 33 HOH HOH . M 6 HOH B 20 720 54 HOH HOH . M 6 HOH B 21 721 35 HOH HOH . M 6 HOH B 22 722 50 HOH HOH . M 6 HOH B 23 723 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . H 2 -20.598 -9.155 -22.458 0.81 65.11 ? P 5GP 600 B 1 HETATM 2 O O1P 5GP . . . H 2 -21.643 -8.353 -23.197 0.81 65.2 ? O1P 5GP 600 B 1 HETATM 3 O O2P 5GP . . . H 2 -20.759 -9.306 -20.966 0.81 65.71 ? O2P 5GP 600 B 1 HETATM 4 O O3P 5GP . . . H 2 -19.231 -8.58 -22.754 0.81 64.75 ? O3P 5GP 600 B 1 HETATM 5 O O5' 5GP . . . H 2 -20.67 -10.619 -23.066 0.81 65.19 ? O5' 5GP 600 B 1 HETATM 6 C C5' 5GP . . . H 2 -21.926 -11.184 -23.422 0.81 65.32 ? C5' 5GP 600 B 1 HETATM 7 C C4' 5GP . . . H 2 -21.756 -12.362 -24.344 0.81 64.88 ? C4' 5GP 600 B 1 HETATM 8 O O4' 5GP . . . H 2 -20.678 -13.197 -23.889 0.81 66.61 ? O4' 5GP 600 B 1 HETATM 9 C C3' 5GP . . . H 2 -22.939 -13.297 -24.422 0.81 62.54 ? C3' 5GP 600 B 1 HETATM 10 O O3' 5GP . . . H 2 -23.889 -12.789 -25.353 0.81 56.64 ? O3' 5GP 600 B 1 HETATM 11 C C2' 5GP . . . H 2 -22.298 -14.584 -24.956 0.81 64.99 ? C2' 5GP 600 B 1 HETATM 12 O O2' 5GP . . . H 2 -22.336 -14.719 -26.361 0.81 65.3 ? O2' 5GP 600 B 1 HETATM 13 C C1' 5GP . . . H 2 -20.843 -14.49 -24.45 0.81 68.61 ? C1' 5GP 600 B 1 HETATM 14 N N9 5GP . . . H 2 -20.485 -15.501 -23.452 0.81 74.92 ? N9 5GP 600 B 1 HETATM 15 C C8 5GP . . . H 2 -21.089 -15.779 -22.289 0.81 76.64 ? C8 5GP 600 B 1 HETATM 16 N N7 5GP . . . H 2 -20.454 -16.771 -21.684 0.81 76.68 ? N7 5GP 600 B 1 HETATM 17 C C5 5GP . . . H 2 -19.422 -17.168 -22.442 0.81 77.6 ? C5 5GP 600 B 1 HETATM 18 C C6 5GP . . . H 2 -18.363 -18.199 -22.324 0.81 79.55 ? C6 5GP 600 B 1 HETATM 19 O O6 5GP . . . H 2 -18.312 -18.923 -21.348 0.81 80.06 ? O6 5GP 600 B 1 HETATM 20 N N1 5GP . . . H 2 -17.416 -18.34 -23.343 0.81 80.5 ? N1 5GP 600 B 1 HETATM 21 C C2 5GP . . . H 2 -17.468 -17.487 -24.507 0.81 80.95 ? C2 5GP 600 B 1 HETATM 22 N N2 5GP . . . H 2 -16.495 -17.63 -25.548 0.81 82.2 ? N2 5GP 600 B 1 HETATM 23 N N3 5GP . . . H 2 -18.431 -16.533 -24.626 0.81 79.24 ? N3 5GP 600 B 1 HETATM 24 C C4 5GP . . . H 2 -19.43 -16.368 -23.577 0.81 77.05 ? C4 5GP 600 B 1 HETATM 25 H "H5'1" 5GP . . . H 2 -22.464 -10.504 -23.874 0.81 78.38 ? "H5'1" 5GP 600 B 1 HETATM 26 H "H5'2" 5GP . . . H 2 -22.393 -11.475 -22.605 0.81 78.38 ? "H5'2" 5GP 600 B 1 HETATM 27 H H4' 5GP . . . H 2 -21.55 -12.036 -25.238 0.81 77.85 ? H4' 5GP 600 B 1 HETATM 28 H H3' 5GP . . . H 2 -23.341 -13.438 -23.538 0.81 75.04 ? H3' 5GP 600 B 1 HETATM 29 H H2' 5GP . . . H 2 -22.73 -15.349 -24.55 0.81 77.98 ? H2' 5GP 600 B 1 HETATM 30 H HO2' 5GP . . . H 2 -23.16 -14.545 -26.653 0.81 78.36 ? HO2' 5GP 600 B 1 HETATM 31 H H1' 5GP . . . H 2 -20.24 -14.579 -25.214 0.81 82.34 ? H1' 5GP 600 B 1 HETATM 32 H H8 5GP . . . H 2 -21.877 -15.313 -21.937 0.81 91.97 ? H8 5GP 600 B 1 HETATM 33 H HN1 5GP . . . H 2 -16.762 -18.976 -23.273 0.81 96.59 ? HN1 5GP 600 B 1 HETATM 34 H HN21 5GP . . . H 2 -15.844 -18.264 -25.478 0.81 98.63 ? HN21 5GP 600 B 1 HETATM 35 H HN22 5GP . . . H 2 -16.528 -17.09 -26.28 0.81 98.63 ? HN22 5GP 600 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 827 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 35 #