data_5TC3 # _model_server_result.job_id FdVvinQ7OmS70C0QiTEijQ _model_server_result.datetime_utc '2024-11-18 05:52:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5TC3 # _exptl.entry_id 5TC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TC3 _cell.length_a 147.88 _cell.length_b 147.88 _cell.length_c 103.542 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 116 n n PG O2G ATP sing 117 n n PG O3G ATP sing 118 n n PG O3B ATP sing 119 n n O2G HOG2 ATP sing 120 n n O3G HOG3 ATP sing 121 n n PB O1B ATP doub 122 n n PB O2B ATP sing 123 n n PB O3B ATP sing 124 n n PB O3A ATP sing 125 n n O2B HOB2 ATP sing 126 n n PA O1A ATP doub 127 n n PA O2A ATP sing 128 n n PA O3A ATP sing 129 n n PA O5' ATP sing 130 n n O2A HOA2 ATP sing 131 n n O5' C5' ATP sing 132 n n C5' C4' ATP sing 133 n n C5' "H5'1" ATP sing 134 n n C5' "H5'2" ATP sing 135 n n C4' O4' ATP sing 136 n n C4' C3' ATP sing 137 n n C4' H4' ATP sing 138 n n O4' C1' ATP sing 139 n n C3' O3' ATP sing 140 n n C3' C2' ATP sing 141 n n C3' H3' ATP sing 142 n n O3' HO3' ATP sing 143 n n C2' O2' ATP sing 144 n n C2' C1' ATP sing 145 n n C2' H2' ATP sing 146 n n O2' HO2' ATP sing 147 n n C1' N9 ATP sing 148 n n C1' H1' ATP sing 149 n n N9 C8 ATP sing 150 n y N9 C4 ATP sing 151 n y C8 N7 ATP doub 152 n y C8 H8 ATP sing 153 n n N7 C5 ATP sing 154 n y C5 C6 ATP sing 155 n y C5 C4 ATP doub 156 n y C6 N6 ATP sing 157 n n C6 N1 ATP doub 158 n y N6 HN61 ATP sing 159 n n N6 HN62 ATP sing 160 n n N1 C2 ATP sing 161 n y C2 N3 ATP doub 162 n y C2 H2 ATP sing 163 n n N3 C4 ATP sing 164 n y # _atom_sites.entry_id 5TC3 _atom_sites.fract_transf_matrix[1][1] 0.006762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 600 600 5GP 5GP . D 3 ATP A 1 601 601 ATP ATP . E 4 GDP A 1 602 602 GDP GDP . F 4 GDP A 1 603 603 GDP GDP . G 5 ACT A 1 604 604 ACT ACT . H 2 5GP B 1 600 600 5GP 5GP . I 3 ATP B 1 601 601 ATP ATP . J 4 GDP B 1 602 602 GDP GDP . K 4 GDP B 1 603 603 GDP GDP . L 6 HOH A 1 701 25 HOH HOH . L 6 HOH A 2 702 36 HOH HOH . L 6 HOH A 3 703 16 HOH HOH . L 6 HOH A 4 704 20 HOH HOH . L 6 HOH A 5 705 17 HOH HOH . L 6 HOH A 6 706 23 HOH HOH . L 6 HOH A 7 707 7 HOH HOH . L 6 HOH A 8 708 1 HOH HOH . L 6 HOH A 9 709 12 HOH HOH . L 6 HOH A 10 710 2 HOH HOH . L 6 HOH A 11 711 24 HOH HOH . L 6 HOH A 12 712 21 HOH HOH . L 6 HOH A 13 713 37 HOH HOH . L 6 HOH A 14 714 43 HOH HOH . L 6 HOH A 15 715 46 HOH HOH . L 6 HOH A 16 716 39 HOH HOH . L 6 HOH A 17 717 41 HOH HOH . L 6 HOH A 18 718 19 HOH HOH . L 6 HOH A 19 719 22 HOH HOH . L 6 HOH A 20 720 47 HOH HOH . L 6 HOH A 21 721 49 HOH HOH . L 6 HOH A 22 722 53 HOH HOH . L 6 HOH A 23 723 40 HOH HOH . L 6 HOH A 24 724 52 HOH HOH . L 6 HOH A 25 725 51 HOH HOH . L 6 HOH A 26 726 45 HOH HOH . L 6 HOH A 27 727 44 HOH HOH . L 6 HOH A 28 728 48 HOH HOH . M 6 HOH B 1 701 8 HOH HOH . M 6 HOH B 2 702 13 HOH HOH . M 6 HOH B 3 703 27 HOH HOH . M 6 HOH B 4 704 15 HOH HOH . M 6 HOH B 5 705 3 HOH HOH . M 6 HOH B 6 706 6 HOH HOH . M 6 HOH B 7 707 11 HOH HOH . M 6 HOH B 8 708 31 HOH HOH . M 6 HOH B 9 709 30 HOH HOH . M 6 HOH B 10 710 29 HOH HOH . M 6 HOH B 11 711 5 HOH HOH . M 6 HOH B 12 712 14 HOH HOH . M 6 HOH B 13 713 26 HOH HOH . M 6 HOH B 14 714 28 HOH HOH . M 6 HOH B 15 715 9 HOH HOH . M 6 HOH B 16 716 32 HOH HOH . M 6 HOH B 17 717 10 HOH HOH . M 6 HOH B 18 718 34 HOH HOH . M 6 HOH B 19 719 33 HOH HOH . M 6 HOH B 20 720 54 HOH HOH . M 6 HOH B 21 721 35 HOH HOH . M 6 HOH B 22 722 50 HOH HOH . M 6 HOH B 23 723 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 -56.42 2.366 -5.513 1 74.35 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . D 3 -57.705 2.411 -6.312 1 73.82 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . D 3 -56.05 1.065 -4.834 1 75.25 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . D 3 -55.308 3.156 -6.166 1 74.9 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . D 3 -58.044 4.527 -4.689 1 70.94 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . D 3 -58.439 4.715 -6.126 1 69.98 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . D 3 -58.378 5.616 -3.721 1 70.99 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . D 3 -56.866 3.576 -4.308 1 73.14 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . D 3 -60.511 4.326 -3.279 1 67.82 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . D 3 -60.681 5.81 -3.152 1 67.5 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . D 3 -60.992 3.494 -2.125 1 67.52 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . D 3 -59.665 3.708 -4.422 1 69.43 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . D 3 -62.219 4.182 -4.011 1 68.76 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . D 3 -62.2 4.948 -5.113 1 69.65 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . D 3 -63.541 4.854 -5.839 1 69.91 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . D 3 -64.596 4.774 -4.877 1 69.36 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . D 3 -63.722 6.206 -6.571 1 70.17 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . D 3 -64.644 6.004 -7.586 1 70.24 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . D 3 -64.27 7.107 -5.468 1 69.94 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . D 3 -65.146 8.077 -5.946 1 70.81 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . D 3 -65.085 6.071 -4.607 1 69.12 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . D 3 -64.861 6.307 -3.178 1 68.75 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . D 3 -63.646 6.369 -2.463 1 68.61 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . D 3 -63.836 6.605 -1.144 1 68.52 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . D 3 -65.23 6.701 -1.001 1 69.08 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . D 3 -66.067 6.938 0.114 1 69.51 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . D 3 -65.532 7.121 1.362 1 69.77 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . D 3 -67.427 6.981 -0.029 1 69.16 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . D 3 -67.902 6.785 -1.302 1 69.19 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . D 3 -67.243 6.554 -2.449 1 69.51 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . D 3 -65.879 6.517 -2.258 1 69.34 ? C4 ATP 601 A 1 HETATM 32 H "H5'1" ATP . . . D 3 -61.522 4.682 -5.754 1 83.58 ? "H5'1" ATP 601 A 1 HETATM 33 H "H5'2" ATP . . . D 3 -62.008 5.887 -4.965 1 83.58 ? "H5'2" ATP 601 A 1 HETATM 34 H H4' ATP . . . D 3 -63.549 4.091 -6.437 1 83.89 ? H4' ATP 601 A 1 HETATM 35 H H3' ATP . . . D 3 -62.853 6.516 -6.868 1 84.2 ? H3' ATP 601 A 1 HETATM 36 H H2' ATP . . . D 3 -63.554 7.517 -4.959 1 83.93 ? H2' ATP 601 A 1 HETATM 37 H HO2' ATP . . . D 3 -64.66 8.727 -6.198 1 84.97 ? HO2' ATP 601 A 1 HETATM 38 H H1' ATP . . . D 3 -66.039 6.102 -4.776 1 82.94 ? H1' ATP 601 A 1 HETATM 39 H H8 ATP . . . D 3 -62.827 6.253 -2.889 1 82.33 ? H8 ATP 601 A 1 HETATM 40 H HN61 ATP . . . D 3 -64.725 7.402 1.464 1 83.73 ? HN61 ATP 601 A 1 HETATM 41 H HN62 ATP . . . D 3 -66.012 6.952 2.056 1 83.73 ? HN62 ATP 601 A 1 HETATM 42 H H2 ATP . . . D 3 -68.829 6.82 -1.375 1 83.03 ? H2 ATP 601 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 42 #