data_5TC3
#
_model_server_result.job_id            YY0mNnRwo-VtoRgd9PRuyA 
_model_server_result.datetime_utc      '2025-07-22 17:39:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tc3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    5TC3 
#
_exptl.entry_id    5TC3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TC3 
_cell.length_a            147.88 
_cell.length_b            147.88 
_cell.length_c            103.542 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TC3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 2 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 3 
A,B,C,D,E,F,G,H,I,J,K,L,M 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 116 n n 
PG O2G ATP sing 117 n n 
PG O3G ATP sing 118 n n 
PG O3B ATP sing 119 n n 
O2G HOG2 ATP sing 120 n n 
O3G HOG3 ATP sing 121 n n 
PB O1B ATP doub 122 n n 
PB O2B ATP sing 123 n n 
PB O3B ATP sing 124 n n 
PB O3A ATP sing 125 n n 
O2B HOB2 ATP sing 126 n n 
PA O1A ATP doub 127 n n 
PA O2A ATP sing 128 n n 
PA O3A ATP sing 129 n n 
PA O5' ATP sing 130 n n 
O2A HOA2 ATP sing 131 n n 
O5' C5' ATP sing 132 n n 
C5' C4' ATP sing 133 n n 
C5' "H5'1" ATP sing 134 n n 
C5' "H5'2" ATP sing 135 n n 
C4' O4' ATP sing 136 n n 
C4' C3' ATP sing 137 n n 
C4' H4' ATP sing 138 n n 
O4' C1' ATP sing 139 n n 
C3' O3' ATP sing 140 n n 
C3' C2' ATP sing 141 n n 
C3' H3' ATP sing 142 n n 
O3' HO3' ATP sing 143 n n 
C2' O2' ATP sing 144 n n 
C2' C1' ATP sing 145 n n 
C2' H2' ATP sing 146 n n 
O2' HO2' ATP sing 147 n n 
C1' N9 ATP sing 148 n n 
C1' H1' ATP sing 149 n n 
N9 C8 ATP sing 150 n y 
N9 C4 ATP sing 151 n y 
C8 N7 ATP doub 152 n y 
C8 H8 ATP sing 153 n n 
N7 C5 ATP sing 154 n y 
C5 C6 ATP sing 155 n y 
C5 C4 ATP doub 156 n y 
C6 N6 ATP sing 157 n n 
C6 N1 ATP doub 158 n y 
N6 HN61 ATP sing 159 n n 
N6 HN62 ATP sing 160 n n 
N1 C2 ATP sing 161 n y 
C2 N3 ATP doub 162 n y 
C2 H2 ATP sing 163 n n 
N3 C4 ATP sing 164 n y 
#
_atom_sites.entry_id                     5TC3 
_atom_sites.fract_transf_matrix[1][1]    0.006762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5GP A 1 600 600 5GP 5GP . 
D 3 ATP A 1 601 601 ATP ATP . 
E 4 GDP A 1 602 602 GDP GDP . 
F 4 GDP A 1 603 603 GDP GDP . 
G 5 ACT A 1 604 604 ACT ACT . 
H 2 5GP B 1 600 600 5GP 5GP . 
I 3 ATP B 1 601 601 ATP ATP . 
J 4 GDP B 1 602 602 GDP GDP . 
K 4 GDP B 1 603 603 GDP GDP . 
L 6 HOH A 1 701 25 HOH HOH . 
L 6 HOH A 2 702 36 HOH HOH . 
L 6 HOH A 3 703 16 HOH HOH . 
L 6 HOH A 4 704 20 HOH HOH . 
L 6 HOH A 5 705 17 HOH HOH . 
L 6 HOH A 6 706 23 HOH HOH . 
L 6 HOH A 7 707 7 HOH HOH . 
L 6 HOH A 8 708 1 HOH HOH . 
L 6 HOH A 9 709 12 HOH HOH . 
L 6 HOH A 10 710 2 HOH HOH . 
L 6 HOH A 11 711 24 HOH HOH . 
L 6 HOH A 12 712 21 HOH HOH . 
L 6 HOH A 13 713 37 HOH HOH . 
L 6 HOH A 14 714 43 HOH HOH . 
L 6 HOH A 15 715 46 HOH HOH . 
L 6 HOH A 16 716 39 HOH HOH . 
L 6 HOH A 17 717 41 HOH HOH . 
L 6 HOH A 18 718 19 HOH HOH . 
L 6 HOH A 19 719 22 HOH HOH . 
L 6 HOH A 20 720 47 HOH HOH . 
L 6 HOH A 21 721 49 HOH HOH . 
L 6 HOH A 22 722 53 HOH HOH . 
L 6 HOH A 23 723 40 HOH HOH . 
L 6 HOH A 24 724 52 HOH HOH . 
L 6 HOH A 25 725 51 HOH HOH . 
L 6 HOH A 26 726 45 HOH HOH . 
L 6 HOH A 27 727 44 HOH HOH . 
L 6 HOH A 28 728 48 HOH HOH . 
M 6 HOH B 1 701 8 HOH HOH . 
M 6 HOH B 2 702 13 HOH HOH . 
M 6 HOH B 3 703 27 HOH HOH . 
M 6 HOH B 4 704 15 HOH HOH . 
M 6 HOH B 5 705 3 HOH HOH . 
M 6 HOH B 6 706 6 HOH HOH . 
M 6 HOH B 7 707 11 HOH HOH . 
M 6 HOH B 8 708 31 HOH HOH . 
M 6 HOH B 9 709 30 HOH HOH . 
M 6 HOH B 10 710 29 HOH HOH . 
M 6 HOH B 11 711 5 HOH HOH . 
M 6 HOH B 12 712 14 HOH HOH . 
M 6 HOH B 13 713 26 HOH HOH . 
M 6 HOH B 14 714 28 HOH HOH . 
M 6 HOH B 15 715 9 HOH HOH . 
M 6 HOH B 16 716 32 HOH HOH . 
M 6 HOH B 17 717 10 HOH HOH . 
M 6 HOH B 18 718 34 HOH HOH . 
M 6 HOH B 19 719 33 HOH HOH . 
M 6 HOH B 20 720 54 HOH HOH . 
M 6 HOH B 21 721 35 HOH HOH . 
M 6 HOH B 22 722 50 HOH HOH . 
M 6 HOH B 23 723 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . I 3 -56.409 -2.394 -4.232 1 76.86 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . I 3 -56.999 -1.578 -5.364 1 76.88 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . I 3 -55.316 -3.381 -4.573 1 77.89 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . I 3 -56.182 -1.71 -2.897 1 77.13 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . I 3 -58.233 -4.459 -4.681 1 70.73 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . I 3 -57.494 -4.752 -5.957 1 70.38 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . I 3 -59.312 -5.396 -4.243 1 69.56 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . I 3 -57.559 -3.562 -3.597 1 74.38 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . I 3 -60.484 -4.245 -6.444 1 67.07 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . I 3 -61.182 -3.625 -7.619 1 66.46 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . I 3 -60.542 -5.739 -6.356 1 67.66 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . I 3 -59.441 -3.428 -5.635 1 69.44 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . I 3 -62.081 -3.995 -5.474 1 65.64 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . I 3 -62.159 -4.932 -4.523 1 65.43 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . I 3 -63.547 -4.867 -3.889 1 64.91 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . I 3 -64.537 -4.807 -4.919 1 64.76 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . I 3 -63.74 -6.221 -3.172 1 64.51 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . I 3 -64.722 -6.039 -2.216 1 64.39 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . I 3 -64.209 -7.126 -4.303 1 64.41 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . I 3 -65.061 -8.133 -3.868 1 64.96 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . I 3 -65.029 -6.105 -5.171 1 64.94 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . I 3 -64.812 -6.358 -6.597 1 66.21 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . I 3 -63.598 -6.436 -7.319 1 66.69 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . I 3 -63.799 -6.684 -8.635 1 66.71 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . I 3 -65.196 -6.77 -8.77 1 67.26 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . I 3 -66.041 -7.01 -9.877 1 67.93 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . I 3 -65.519 -7.213 -11.127 1 68.02 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . I 3 -67.397 -7.041 -9.725 1 68.19 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . I 3 -67.864 -6.827 -8.45 1 68.28 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . I 3 -67.195 -6.59 -7.31 1 68 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . I 3 -65.836 -6.568 -7.51 1 67.3 ? C4 ATP 601 B 1 
HETATM 32 H "H5'1" ATP . . . I 3 -61.518 -4.811 -3.805 1 78.52 ? "H5'1" ATP 601 B 1 
HETATM 33 H "H5'2" ATP . . . I 3 -62.006 -5.844 -4.815 1 78.52 ? "H5'2" ATP 601 B 1 
HETATM 34 H H4' ATP . . . I 3 -63.61 -4.105 -3.291 1 77.89 ? H4' ATP 601 B 1 
HETATM 35 H H3' ATP . . . I 3 -62.883 -6.517 -2.826 1 77.41 ? H3' ATP 601 B 1 
HETATM 36 H H2' ATP . . . I 3 -63.459 -7.5 -4.792 1 77.29 ? H2' ATP 601 B 1 
HETATM 37 H HO2' ATP . . . I 3 -64.56 -8.755 -3.578 1 77.95 ? HO2' ATP 601 B 1 
HETATM 38 H H1' ATP . . . I 3 -65.982 -6.134 -4.996 1 77.93 ? H1' ATP 601 B 1 
HETATM 39 H H8 ATP . . . I 3 -62.776 -6.323 -6.898 1 80.03 ? H8 ATP 601 B 1 
HETATM 40 H HN61 ATP . . . I 3 -64.681 -7.374 -11.239 1 81.62 ? HN61 ATP 601 B 1 
HETATM 41 H HN62 ATP . . . I 3 -66.038 -7.178 -11.812 1 81.62 ? HN62 ATP 601 B 1 
HETATM 42 H H2 ATP . . . I 3 -68.79 -6.854 -8.371 1 81.93 ? H2 ATP 601 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#