data_5TC4 # _model_server_result.job_id 1WwlYyFkGeIjGzwPYK636Q _model_server_result.datetime_utc '2024-10-20 20:18:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5TC4 # _exptl.entry_id 5TC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.423 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(7-AMINO-9-HYDROXY-1-OXO-3,3A,4,5-TETRAHYDRO-2,5,6,8,9B-PENTAAZA-CYCLOPENTA[A]NAPHTHALEN-2-YL)-PHENYLCARBONYL-GLUTAMI C ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TC4 _cell.length_a 74.323 _cell.length_b 74.323 _cell.length_c 98.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_855 -x+3,-y,z -1 0 0 0 -1 0 0 0 1 222.969 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 N7 O7' _chem_comp.formula_weight 471.423 _chem_comp.id L34 _chem_comp.mon_nstd_flag . _chem_comp.name '4-(7-AMINO-9-HYDROXY-1-OXO-3,3A,4,5-TETRAHYDRO-2,5,6,8,9B-PENTAAZA-CYCLOPENTA[A]NAPHTHALEN-2-YL)-PHENYLCARBONYL-GLUTAMI C ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LY345899 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 L34 sing 173 n n N2A HN21 L34 sing 174 n n N2A HN22 L34 sing 175 n n N1 C2 L34 doub 176 n y N1 C8A L34 sing 177 n y C2 N3 L34 sing 178 n y N3 C4 L34 doub 179 n y C4 O4A L34 sing 180 n n C4 C4A L34 sing 181 n y O4A HO4 L34 sing 182 n n C4A N5 L34 sing 183 n n C4A C8A L34 doub 184 n y N5 C6 L34 sing 185 n n N5 CX L34 sing 186 n n C6 C7 L34 sing 187 n n C6 C9 L34 sing 188 n n C6 H6 L34 sing 189 n n C7 N8 L34 sing 190 n n C7 H71 L34 sing 191 n n C7 H72 L34 sing 192 n n N8 C8A L34 sing 193 n n N8 HN8 L34 sing 194 n n CX OX L34 doub 195 n n CX N10 L34 sing 196 n n C9 N10 L34 sing 197 n n C9 H91 L34 sing 198 n n C9 H92 L34 sing 199 n n N10 C1B L34 sing 200 n n C1B C2B L34 doub 201 n y C1B C6B L34 sing 202 n y C2B C3B L34 sing 203 n y C2B H2B L34 sing 204 n n C3B C4B L34 doub 205 n y C3B H3B L34 sing 206 n n C4B C5B L34 sing 207 n y C4B C7B L34 sing 208 n n C5B C6B L34 doub 209 n y C5B H5B L34 sing 210 n n C6B H6B L34 sing 211 n n C7B O7B L34 doub 212 n n C7B N L34 sing 213 n n N CA L34 sing 214 n n N HN L34 sing 215 n n CA CB L34 sing 216 n n CA C L34 sing 217 n n CA HA L34 sing 218 n n CB CG L34 sing 219 n n CB HB1 L34 sing 220 n n CB HB2 L34 sing 221 n n CG CD L34 sing 222 n n CG HG1 L34 sing 223 n n CG HG2 L34 sing 224 n n CD OE1 L34 doub 225 n n CD OE2 L34 sing 226 n n OE2 HE2 L34 sing 227 n n C O L34 doub 228 n n C OXT L34 sing 229 n n OXT HXT L34 sing 230 n n # _atom_sites.entry_id 5TC4 _atom_sites.fract_transf_matrix[1][1] 0.013455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 1 NAD NAD . C 3 L34 A 1 402 1 L34 L34 . D 4 PO4 A 1 403 1 PO4 PO4 . E 5 HOH A 1 501 193 HOH HOH . E 5 HOH A 2 502 144 HOH HOH . E 5 HOH A 3 503 145 HOH HOH . E 5 HOH A 4 504 1 HOH HOH . E 5 HOH A 5 505 71 HOH HOH . E 5 HOH A 6 506 77 HOH HOH . E 5 HOH A 7 507 159 HOH HOH . E 5 HOH A 8 508 126 HOH HOH . E 5 HOH A 9 509 178 HOH HOH . E 5 HOH A 10 510 136 HOH HOH . E 5 HOH A 11 511 179 HOH HOH . E 5 HOH A 12 512 25 HOH HOH . E 5 HOH A 13 513 78 HOH HOH . E 5 HOH A 14 514 202 HOH HOH . E 5 HOH A 15 515 224 HOH HOH . E 5 HOH A 16 516 212 HOH HOH . E 5 HOH A 17 517 40 HOH HOH . E 5 HOH A 18 518 8 HOH HOH . E 5 HOH A 19 519 2 HOH HOH . E 5 HOH A 20 520 86 HOH HOH . E 5 HOH A 21 521 37 HOH HOH . E 5 HOH A 22 522 169 HOH HOH . E 5 HOH A 23 523 66 HOH HOH . E 5 HOH A 24 524 194 HOH HOH . E 5 HOH A 25 525 23 HOH HOH . E 5 HOH A 26 526 108 HOH HOH . E 5 HOH A 27 527 53 HOH HOH . E 5 HOH A 28 528 75 HOH HOH . E 5 HOH A 29 529 27 HOH HOH . E 5 HOH A 30 530 141 HOH HOH . E 5 HOH A 31 531 80 HOH HOH . E 5 HOH A 32 532 7 HOH HOH . E 5 HOH A 33 533 62 HOH HOH . E 5 HOH A 34 534 211 HOH HOH . E 5 HOH A 35 535 10 HOH HOH . E 5 HOH A 36 536 90 HOH HOH . E 5 HOH A 37 537 28 HOH HOH . E 5 HOH A 38 538 123 HOH HOH . E 5 HOH A 39 539 171 HOH HOH . E 5 HOH A 40 540 103 HOH HOH . E 5 HOH A 41 541 12 HOH HOH . E 5 HOH A 42 542 41 HOH HOH . E 5 HOH A 43 543 82 HOH HOH . E 5 HOH A 44 544 107 HOH HOH . E 5 HOH A 45 545 205 HOH HOH . E 5 HOH A 46 546 79 HOH HOH . E 5 HOH A 47 547 190 HOH HOH . E 5 HOH A 48 548 15 HOH HOH . E 5 HOH A 49 549 118 HOH HOH . E 5 HOH A 50 550 50 HOH HOH . E 5 HOH A 51 551 13 HOH HOH . E 5 HOH A 52 552 11 HOH HOH . E 5 HOH A 53 553 84 HOH HOH . E 5 HOH A 54 554 155 HOH HOH . E 5 HOH A 55 555 29 HOH HOH . E 5 HOH A 56 556 42 HOH HOH . E 5 HOH A 57 557 38 HOH HOH . E 5 HOH A 58 558 147 HOH HOH . E 5 HOH A 59 559 47 HOH HOH . E 5 HOH A 60 560 4 HOH HOH . E 5 HOH A 61 561 182 HOH HOH . E 5 HOH A 62 562 46 HOH HOH . E 5 HOH A 63 563 55 HOH HOH . E 5 HOH A 64 564 5 HOH HOH . E 5 HOH A 65 565 44 HOH HOH . E 5 HOH A 66 566 33 HOH HOH . E 5 HOH A 67 567 115 HOH HOH . E 5 HOH A 68 568 45 HOH HOH . E 5 HOH A 69 569 49 HOH HOH . E 5 HOH A 70 570 51 HOH HOH . E 5 HOH A 71 571 76 HOH HOH . E 5 HOH A 72 572 206 HOH HOH . E 5 HOH A 73 573 43 HOH HOH . E 5 HOH A 74 574 32 HOH HOH . E 5 HOH A 75 575 128 HOH HOH . E 5 HOH A 76 576 34 HOH HOH . E 5 HOH A 77 577 56 HOH HOH . E 5 HOH A 78 578 95 HOH HOH . E 5 HOH A 79 579 16 HOH HOH . E 5 HOH A 80 580 85 HOH HOH . E 5 HOH A 81 581 72 HOH HOH . E 5 HOH A 82 582 60 HOH HOH . E 5 HOH A 83 583 26 HOH HOH . E 5 HOH A 84 584 89 HOH HOH . E 5 HOH A 85 585 97 HOH HOH . E 5 HOH A 86 586 124 HOH HOH . E 5 HOH A 87 587 91 HOH HOH . E 5 HOH A 88 588 68 HOH HOH . E 5 HOH A 89 589 6 HOH HOH . E 5 HOH A 90 590 58 HOH HOH . E 5 HOH A 91 591 121 HOH HOH . E 5 HOH A 92 592 142 HOH HOH . E 5 HOH A 93 593 127 HOH HOH . E 5 HOH A 94 594 19 HOH HOH . E 5 HOH A 95 595 120 HOH HOH . E 5 HOH A 96 596 204 HOH HOH . E 5 HOH A 97 597 138 HOH HOH . E 5 HOH A 98 598 48 HOH HOH . E 5 HOH A 99 599 161 HOH HOH . E 5 HOH A 100 600 70 HOH HOH . E 5 HOH A 101 601 210 HOH HOH . E 5 HOH A 102 602 125 HOH HOH . E 5 HOH A 103 603 225 HOH HOH . E 5 HOH A 104 604 35 HOH HOH . E 5 HOH A 105 605 24 HOH HOH . E 5 HOH A 106 606 184 HOH HOH . E 5 HOH A 107 607 113 HOH HOH . E 5 HOH A 108 608 83 HOH HOH . E 5 HOH A 109 609 61 HOH HOH . E 5 HOH A 110 610 105 HOH HOH . E 5 HOH A 111 611 52 HOH HOH . E 5 HOH A 112 612 176 HOH HOH . E 5 HOH A 113 613 106 HOH HOH . E 5 HOH A 114 614 64 HOH HOH . E 5 HOH A 115 615 63 HOH HOH . E 5 HOH A 116 616 74 HOH HOH . E 5 HOH A 117 617 3 HOH HOH . E 5 HOH A 118 618 36 HOH HOH . E 5 HOH A 119 619 73 HOH HOH . E 5 HOH A 120 620 67 HOH HOH . E 5 HOH A 121 621 31 HOH HOH . E 5 HOH A 122 622 207 HOH HOH . E 5 HOH A 123 623 203 HOH HOH . E 5 HOH A 124 624 148 HOH HOH . E 5 HOH A 125 625 22 HOH HOH . E 5 HOH A 126 626 30 HOH HOH . E 5 HOH A 127 627 116 HOH HOH . E 5 HOH A 128 628 137 HOH HOH . E 5 HOH A 129 629 21 HOH HOH . E 5 HOH A 130 630 54 HOH HOH . E 5 HOH A 131 631 92 HOH HOH . E 5 HOH A 132 632 111 HOH HOH . E 5 HOH A 133 633 180 HOH HOH . E 5 HOH A 134 634 217 HOH HOH . E 5 HOH A 135 635 220 HOH HOH . E 5 HOH A 136 636 226 HOH HOH . E 5 HOH A 137 637 151 HOH HOH . E 5 HOH A 138 638 174 HOH HOH . E 5 HOH A 139 639 177 HOH HOH . E 5 HOH A 140 640 88 HOH HOH . E 5 HOH A 141 641 39 HOH HOH . E 5 HOH A 142 642 9 HOH HOH . E 5 HOH A 143 643 208 HOH HOH . E 5 HOH A 144 644 133 HOH HOH . E 5 HOH A 145 645 14 HOH HOH . E 5 HOH A 146 646 172 HOH HOH . E 5 HOH A 147 647 20 HOH HOH . E 5 HOH A 148 648 223 HOH HOH . E 5 HOH A 149 649 18 HOH HOH . E 5 HOH A 150 650 119 HOH HOH . E 5 HOH A 151 651 167 HOH HOH . E 5 HOH A 152 652 100 HOH HOH . E 5 HOH A 153 653 158 HOH HOH . E 5 HOH A 154 654 213 HOH HOH . E 5 HOH A 155 655 146 HOH HOH . E 5 HOH A 156 656 209 HOH HOH . E 5 HOH A 157 657 65 HOH HOH . E 5 HOH A 158 658 99 HOH HOH . E 5 HOH A 159 659 187 HOH HOH . E 5 HOH A 160 660 214 HOH HOH . E 5 HOH A 161 661 150 HOH HOH . E 5 HOH A 162 662 139 HOH HOH . E 5 HOH A 163 663 57 HOH HOH . E 5 HOH A 164 664 162 HOH HOH . E 5 HOH A 165 665 17 HOH HOH . E 5 HOH A 166 666 122 HOH HOH . E 5 HOH A 167 667 168 HOH HOH . E 5 HOH A 168 668 130 HOH HOH . E 5 HOH A 169 669 183 HOH HOH . E 5 HOH A 170 670 185 HOH HOH . E 5 HOH A 171 671 152 HOH HOH . E 5 HOH A 172 672 188 HOH HOH . E 5 HOH A 173 673 175 HOH HOH . E 5 HOH A 174 674 227 HOH HOH . E 5 HOH A 175 675 117 HOH HOH . E 5 HOH A 176 676 216 HOH HOH . E 5 HOH A 177 677 135 HOH HOH . E 5 HOH A 178 678 199 HOH HOH . E 5 HOH A 179 679 109 HOH HOH . E 5 HOH A 180 680 156 HOH HOH . E 5 HOH A 181 681 170 HOH HOH . E 5 HOH A 182 682 173 HOH HOH . E 5 HOH A 183 683 221 HOH HOH . E 5 HOH A 184 684 149 HOH HOH . E 5 HOH A 185 685 98 HOH HOH . E 5 HOH A 186 686 81 HOH HOH . E 5 HOH A 187 687 219 HOH HOH . E 5 HOH A 188 688 132 HOH HOH . E 5 HOH A 189 689 201 HOH HOH . E 5 HOH A 190 690 181 HOH HOH . E 5 HOH A 191 691 195 HOH HOH . E 5 HOH A 192 692 131 HOH HOH . E 5 HOH A 193 693 215 HOH HOH . E 5 HOH A 194 694 110 HOH HOH . E 5 HOH A 195 695 96 HOH HOH . E 5 HOH A 196 696 164 HOH HOH . E 5 HOH A 197 697 189 HOH HOH . E 5 HOH A 198 698 104 HOH HOH . E 5 HOH A 199 699 59 HOH HOH . E 5 HOH A 200 700 192 HOH HOH . E 5 HOH A 201 701 69 HOH HOH . E 5 HOH A 202 702 140 HOH HOH . E 5 HOH A 203 703 165 HOH HOH . E 5 HOH A 204 704 166 HOH HOH . E 5 HOH A 205 705 222 HOH HOH . E 5 HOH A 206 706 218 HOH HOH . E 5 HOH A 207 707 134 HOH HOH . E 5 HOH A 208 708 186 HOH HOH . E 5 HOH A 209 709 191 HOH HOH . E 5 HOH A 210 710 153 HOH HOH . E 5 HOH A 211 711 197 HOH HOH . E 5 HOH A 212 712 163 HOH HOH . E 5 HOH A 213 713 200 HOH HOH . E 5 HOH A 214 714 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A L34 . . . C 3 103.097 15.659 7.133 1 20.64 ? N2A L34 402 A 1 HETATM 2 N N1 L34 . . . C 3 103.103 17.082 5.282 1 20.52 ? N1 L34 402 A 1 HETATM 3 C C2 L34 . . . C 3 102.638 15.962 5.899 1 20.28 ? C2 L34 402 A 1 HETATM 4 N N3 L34 . . . C 3 101.707 15.146 5.339 1 22.08 ? N3 L34 402 A 1 HETATM 5 C C4 L34 . . . C 3 101.201 15.343 4.091 1 21.6 ? C4 L34 402 A 1 HETATM 6 O O4A L34 . . . C 3 100.318 14.476 3.553 1 22.46 ? O4A L34 402 A 1 HETATM 7 C C4A L34 . . . C 3 101.676 16.506 3.342 1 21.68 ? C4A L34 402 A 1 HETATM 8 N N5 L34 . . . C 3 101.246 16.975 2.115 1 24.14 ? N5 L34 402 A 1 HETATM 9 C C6 L34 . . . C 3 102.139 17.571 1.154 1 23.08 ? C6 L34 402 A 1 HETATM 10 C C7 L34 . . . C 3 102.841 18.731 1.898 1 23.41 ? C7 L34 402 A 1 HETATM 11 N N8 L34 . . . C 3 103.119 18.438 3.324 1 22.21 ? N8 L34 402 A 1 HETATM 12 C C8A L34 . . . C 3 102.654 17.389 4.008 1 21.86 ? C8A L34 402 A 1 HETATM 13 C CX L34 . . . C 3 99.964 17.247 1.868 1 25.8 ? CX L34 402 A 1 HETATM 14 O OX L34 . . . C 3 99.041 17.125 2.677 1 25.29 ? OX L34 402 A 1 HETATM 15 C C9 L34 . . . C 3 101.182 18.145 0.119 1 24.36 ? C9 L34 402 A 1 HETATM 16 N N10 L34 . . . C 3 99.889 17.839 0.671 1 24.63 ? N10 L34 402 A 1 HETATM 17 C C1B L34 . . . C 3 98.7 18.242 0.012 1 25.83 ? C1B L34 402 A 1 HETATM 18 C C2B L34 . . . C 3 97.421 18.137 0.586 1 27.22 ? C2B L34 402 A 1 HETATM 19 C C3B L34 . . . C 3 96.275 18.549 -0.072 1 26.26 ? C3B L34 402 A 1 HETATM 20 C C4B L34 . . . C 3 96.382 19.105 -1.335 1 29.47 ? C4B L34 402 A 1 HETATM 21 C C5B L34 . . . C 3 97.637 19.261 -1.914 1 27.76 ? C5B L34 402 A 1 HETATM 22 C C6B L34 . . . C 3 98.77 18.845 -1.246 1 27.88 ? C6B L34 402 A 1 HETATM 23 C C7B L34 . . . C 3 95.125 19.575 -2.006 1 33.83 ? C7B L34 402 A 1 HETATM 24 O O7B L34 . . . C 3 94.109 19.62 -1.332 1 32.43 ? O7B L34 402 A 1 HETATM 25 N N L34 . . . C 3 95.172 19.986 -3.262 1 36.23 ? N L34 402 A 1 HETATM 26 C CA L34 . . . C 3 94.028 20.541 -3.953 1 39.05 ? CA L34 402 A 1 HETATM 27 C CB L34 . . . C 3 94.075 22.054 -3.841 1 44.92 ? CB L34 402 A 1 HETATM 28 C CG L34 . . . C 3 95.188 22.693 -4.658 1 51.69 ? CG L34 402 A 1 HETATM 29 C CD L34 . . . C 3 95.467 24.081 -4.11 1 54.48 ? CD L34 402 A 1 HETATM 30 O OE1 L34 . . . C 3 96.538 24.312 -3.508 1 53.94 ? OE1 L34 402 A 1 HETATM 31 O OE2 L34 . . . C 3 94.586 24.956 -4.288 1 59.85 ? OE2 L34 402 A 1 HETATM 32 C C L34 . . . C 3 93.961 19.987 -5.364 1 35.8 ? C L34 402 A 1 HETATM 33 O O L34 . . . C 3 94.943 19.527 -5.98 1 27.61 ? O L34 402 A 1 HETATM 34 O OXT L34 . . . C 3 92.845 19.919 -5.86 1 33.9 ? OXT L34 402 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 550 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #