data_5TC8 # _model_server_result.job_id 0_AsUIdunUx6I5IPX79KaA _model_server_result.datetime_utc '2024-11-08 13:51:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5TC8 # _exptl.entry_id 5TC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TC8 _cell.length_a 123.065 _cell.length_b 123.065 _cell.length_c 44.755 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 61.5325 106.577416 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -61.5325 106.577416 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 145 1_555 A SG CYS 225 A CYS 211 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.094 ? metalc ? metalc1 A O THR 132 A THR 118 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc2 A O THR 132 A THR 118 1_555 D MG MG . A MG 303 3_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 D MG MG . A MG 303 1_555 J O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 D MG MG . A MG 303 1_555 J O HOH . A HOH 573 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 E MG MG . A MG 304 1_555 G O10 2PE . A 2PE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc6 E MG MG . A MG 304 1_555 G O7 2PE . A 2PE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc7 E MG MG . A MG 304 1_555 G O1 2PE . A 2PE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc8 E MG MG . A MG 304 1_555 G O4 2PE . A 2PE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc9 E MG MG . A MG 304 1_555 G O16 2PE . A 2PE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc10 E MG MG . A MG 304 1_555 J O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TC8 _atom_sites.fract_transf_matrix[1][1] 0.008126 _atom_sites.fract_transf_matrix[1][2] 0.004691 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TDI A 1 301 1 TDI TDI . C 3 PO4 A 1 302 2 PO4 PO4 . D 4 MG A 1 303 1 MG MG . E 4 MG A 1 304 2 MG MG . F 5 CL A 1 305 3 CL CL . G 6 2PE A 1 306 1 2PE 2PE . H 7 PEG A 1 307 2 PEG PEG . I 7 PEG A 1 308 3 PEG PEG . J 8 HOH A 1 401 127 HOH HOH . J 8 HOH A 2 402 116 HOH HOH . J 8 HOH A 3 403 176 HOH HOH . J 8 HOH A 4 404 50 HOH HOH . J 8 HOH A 5 405 149 HOH HOH . J 8 HOH A 6 406 142 HOH HOH . J 8 HOH A 7 407 83 HOH HOH . J 8 HOH A 8 408 73 HOH HOH . J 8 HOH A 9 409 79 HOH HOH . J 8 HOH A 10 410 5 HOH HOH . J 8 HOH A 11 411 2 HOH HOH . J 8 HOH A 12 412 117 HOH HOH . J 8 HOH A 13 413 126 HOH HOH . J 8 HOH A 14 414 1 HOH HOH . J 8 HOH A 15 415 86 HOH HOH . J 8 HOH A 16 416 88 HOH HOH . J 8 HOH A 17 417 61 HOH HOH . J 8 HOH A 18 418 90 HOH HOH . J 8 HOH A 19 419 139 HOH HOH . J 8 HOH A 20 420 147 HOH HOH . J 8 HOH A 21 421 123 HOH HOH . J 8 HOH A 22 422 154 HOH HOH . J 8 HOH A 23 423 37 HOH HOH . J 8 HOH A 24 424 114 HOH HOH . J 8 HOH A 25 425 166 HOH HOH . J 8 HOH A 26 426 74 HOH HOH . J 8 HOH A 27 427 138 HOH HOH . J 8 HOH A 28 428 4 HOH HOH . J 8 HOH A 29 429 12 HOH HOH . J 8 HOH A 30 430 11 HOH HOH . J 8 HOH A 31 431 145 HOH HOH . J 8 HOH A 32 432 19 HOH HOH . J 8 HOH A 33 433 124 HOH HOH . J 8 HOH A 34 434 133 HOH HOH . J 8 HOH A 35 435 28 HOH HOH . J 8 HOH A 36 436 41 HOH HOH . J 8 HOH A 37 437 101 HOH HOH . J 8 HOH A 38 438 3 HOH HOH . J 8 HOH A 39 439 7 HOH HOH . J 8 HOH A 40 440 57 HOH HOH . J 8 HOH A 41 441 36 HOH HOH . J 8 HOH A 42 442 129 HOH HOH . J 8 HOH A 43 443 21 HOH HOH . J 8 HOH A 44 444 63 HOH HOH . J 8 HOH A 45 445 25 HOH HOH . J 8 HOH A 46 446 27 HOH HOH . J 8 HOH A 47 447 16 HOH HOH . J 8 HOH A 48 448 151 HOH HOH . J 8 HOH A 49 449 40 HOH HOH . J 8 HOH A 50 450 111 HOH HOH . J 8 HOH A 51 451 18 HOH HOH . J 8 HOH A 52 452 99 HOH HOH . J 8 HOH A 53 453 20 HOH HOH . J 8 HOH A 54 454 160 HOH HOH . J 8 HOH A 55 455 60 HOH HOH . J 8 HOH A 56 456 183 HOH HOH . J 8 HOH A 57 457 93 HOH HOH . J 8 HOH A 58 458 26 HOH HOH . J 8 HOH A 59 459 85 HOH HOH . J 8 HOH A 60 460 172 HOH HOH . J 8 HOH A 61 461 15 HOH HOH . J 8 HOH A 62 462 75 HOH HOH . J 8 HOH A 63 463 54 HOH HOH . J 8 HOH A 64 464 148 HOH HOH . J 8 HOH A 65 465 104 HOH HOH . J 8 HOH A 66 466 52 HOH HOH . J 8 HOH A 67 467 66 HOH HOH . J 8 HOH A 68 468 113 HOH HOH . J 8 HOH A 69 469 17 HOH HOH . J 8 HOH A 70 470 64 HOH HOH . J 8 HOH A 71 471 92 HOH HOH . J 8 HOH A 72 472 89 HOH HOH . J 8 HOH A 73 473 168 HOH HOH . J 8 HOH A 74 474 44 HOH HOH . J 8 HOH A 75 475 47 HOH HOH . J 8 HOH A 76 476 108 HOH HOH . J 8 HOH A 77 477 55 HOH HOH . J 8 HOH A 78 478 29 HOH HOH . J 8 HOH A 79 479 184 HOH HOH . J 8 HOH A 80 480 170 HOH HOH . J 8 HOH A 81 481 132 HOH HOH . J 8 HOH A 82 482 91 HOH HOH . J 8 HOH A 83 483 125 HOH HOH . J 8 HOH A 84 484 31 HOH HOH . J 8 HOH A 85 485 56 HOH HOH . J 8 HOH A 86 486 115 HOH HOH . J 8 HOH A 87 487 30 HOH HOH . J 8 HOH A 88 488 38 HOH HOH . J 8 HOH A 89 489 13 HOH HOH . J 8 HOH A 90 490 112 HOH HOH . J 8 HOH A 91 491 150 HOH HOH . J 8 HOH A 92 492 76 HOH HOH . J 8 HOH A 93 493 167 HOH HOH . J 8 HOH A 94 494 48 HOH HOH . J 8 HOH A 95 495 119 HOH HOH . J 8 HOH A 96 496 157 HOH HOH . J 8 HOH A 97 497 34 HOH HOH . J 8 HOH A 98 498 10 HOH HOH . J 8 HOH A 99 499 9 HOH HOH . J 8 HOH A 100 500 141 HOH HOH . J 8 HOH A 101 501 110 HOH HOH . J 8 HOH A 102 502 43 HOH HOH . J 8 HOH A 103 503 144 HOH HOH . J 8 HOH A 104 504 70 HOH HOH . J 8 HOH A 105 505 82 HOH HOH . J 8 HOH A 106 506 180 HOH HOH . J 8 HOH A 107 507 51 HOH HOH . J 8 HOH A 108 508 42 HOH HOH . J 8 HOH A 109 509 8 HOH HOH . J 8 HOH A 110 510 81 HOH HOH . J 8 HOH A 111 511 165 HOH HOH . J 8 HOH A 112 512 169 HOH HOH . J 8 HOH A 113 513 71 HOH HOH . J 8 HOH A 114 514 106 HOH HOH . J 8 HOH A 115 515 94 HOH HOH . J 8 HOH A 116 516 6 HOH HOH . J 8 HOH A 117 517 153 HOH HOH . J 8 HOH A 118 518 163 HOH HOH . J 8 HOH A 119 519 23 HOH HOH . J 8 HOH A 120 520 53 HOH HOH . J 8 HOH A 121 521 84 HOH HOH . J 8 HOH A 122 522 72 HOH HOH . J 8 HOH A 123 523 45 HOH HOH . J 8 HOH A 124 524 102 HOH HOH . J 8 HOH A 125 525 46 HOH HOH . J 8 HOH A 126 526 78 HOH HOH . J 8 HOH A 127 527 58 HOH HOH . J 8 HOH A 128 528 24 HOH HOH . J 8 HOH A 129 529 98 HOH HOH . J 8 HOH A 130 530 35 HOH HOH . J 8 HOH A 131 531 59 HOH HOH . J 8 HOH A 132 532 69 HOH HOH . J 8 HOH A 133 533 65 HOH HOH . J 8 HOH A 134 534 32 HOH HOH . J 8 HOH A 135 535 140 HOH HOH . J 8 HOH A 136 536 22 HOH HOH . J 8 HOH A 137 537 174 HOH HOH . J 8 HOH A 138 538 177 HOH HOH . J 8 HOH A 139 539 171 HOH HOH . J 8 HOH A 140 540 97 HOH HOH . J 8 HOH A 141 541 14 HOH HOH . J 8 HOH A 142 542 158 HOH HOH . J 8 HOH A 143 543 67 HOH HOH . J 8 HOH A 144 544 185 HOH HOH . J 8 HOH A 145 545 109 HOH HOH . J 8 HOH A 146 546 39 HOH HOH . J 8 HOH A 147 547 128 HOH HOH . J 8 HOH A 148 548 100 HOH HOH . J 8 HOH A 149 549 134 HOH HOH . J 8 HOH A 150 550 107 HOH HOH . J 8 HOH A 151 551 96 HOH HOH . J 8 HOH A 152 552 68 HOH HOH . J 8 HOH A 153 553 87 HOH HOH . J 8 HOH A 154 554 80 HOH HOH . J 8 HOH A 155 555 105 HOH HOH . J 8 HOH A 156 556 164 HOH HOH . J 8 HOH A 157 557 49 HOH HOH . J 8 HOH A 158 558 175 HOH HOH . J 8 HOH A 159 559 159 HOH HOH . J 8 HOH A 160 560 178 HOH HOH . J 8 HOH A 161 561 95 HOH HOH . J 8 HOH A 162 562 181 HOH HOH . J 8 HOH A 163 563 182 HOH HOH . J 8 HOH A 164 564 33 HOH HOH . J 8 HOH A 165 565 173 HOH HOH . J 8 HOH A 166 566 179 HOH HOH . J 8 HOH A 167 567 122 HOH HOH . J 8 HOH A 168 568 146 HOH HOH . J 8 HOH A 169 569 120 HOH HOH . J 8 HOH A 170 570 143 HOH HOH . J 8 HOH A 171 571 118 HOH HOH . J 8 HOH A 172 572 137 HOH HOH . J 8 HOH A 173 573 155 HOH HOH . J 8 HOH A 174 574 77 HOH HOH . J 8 HOH A 175 575 156 HOH HOH . J 8 HOH A 176 576 162 HOH HOH . J 8 HOH A 177 577 161 HOH HOH . J 8 HOH A 178 578 152 HOH HOH . J 8 HOH A 179 579 130 HOH HOH . J 8 HOH A 180 580 121 HOH HOH . J 8 HOH A 181 581 62 HOH HOH . J 8 HOH A 182 582 103 HOH HOH . J 8 HOH A 183 583 135 HOH HOH . J 8 HOH A 184 584 136 HOH HOH . J 8 HOH A 185 585 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.007 _atom_site.Cartn_y 71.053 _atom_site.Cartn_z 59.595 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 20.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #