data_5TCC # _model_server_result.job_id CfB7vLDtf8F4rWpTb7HQcw _model_server_result.datetime_utc '2025-07-03 03:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 5TCC # _exptl.entry_id 5TCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-(6-bromopyridin-2-yl)-3-[(1H-indazol-1-yl)acetyl]-1,3-thiazolidine-2-carboxamide _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TCC _cell.length_a 98.886 _cell.length_b 143.745 _cell.length_c 346.166 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H 1 1 B,I 2 1 C,J,K 3 1 D,L 4 1 E,M,N 5 1 F,O 6 1 G,P 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 41 1_555 A SG CYS 42 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 123 A CYS 138 1_555 A SG CYS 189 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 154 A CYS 169 1_555 A SG CYS 170 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 179 A CYS 194 1_555 A SG CYS 204 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 B SG CYS 26 B CYS 41 1_555 B SG CYS 42 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 123 B CYS 138 1_555 B SG CYS 189 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 154 B CYS 169 1_555 B SG CYS 170 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 179 B CYS 194 1_555 B SG CYS 204 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 C SG CYS 26 C CYS 41 1_555 C SG CYS 42 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 C SG CYS 123 C CYS 138 1_555 C SG CYS 189 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf11 C SG CYS 154 C CYS 169 1_555 C SG CYS 170 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf12 C SG CYS 179 C CYS 194 1_555 C SG CYS 204 C CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf13 D SG CYS 26 D CYS 41 1_555 D SG CYS 42 D CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf14 D SG CYS 123 D CYS 138 1_555 D SG CYS 189 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 D SG CYS 154 D CYS 169 1_555 D SG CYS 170 D CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf16 D SG CYS 179 D CYS 194 1_555 D SG CYS 204 D CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf17 E SG CYS 26 E CYS 41 1_555 E SG CYS 42 E CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 E SG CYS 123 E CYS 138 1_555 E SG CYS 189 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf19 E SG CYS 154 E CYS 169 1_555 E SG CYS 170 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf20 E SG CYS 179 E CYS 194 1_555 E SG CYS 204 E CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf21 F SG CYS 26 F CYS 41 1_555 F SG CYS 42 F CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 F SG CYS 123 F CYS 138 1_555 F SG CYS 189 F CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf23 F SG CYS 154 F CYS 169 1_555 F SG CYS 170 F CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf24 F SG CYS 179 F CYS 194 1_555 F SG CYS 204 F CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf25 G SG CYS 26 G CYS 41 1_555 G SG CYS 42 G CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf26 G SG CYS 123 G CYS 138 1_555 G SG CYS 189 G CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf27 G SG CYS 154 G CYS 169 1_555 G SG CYS 170 G CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf28 G SG CYS 179 G CYS 194 1_555 G SG CYS 204 G CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C18 H16 Br N5 O2 S' _chem_comp.formula_weight 446.321 _chem_comp.id J56 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-(6-bromopyridin-2-yl)-3-[(1H-indazol-1-yl)acetyl]-1,3-thiazolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 J56 doub 171 n y C13 C12 J56 sing 172 n y C14 C9 J56 sing 173 n y BR C J56 sing 174 n n C12 C11 J56 doub 175 n y C9 C8 J56 sing 176 n y C9 C10 J56 doub 177 n y C17 C J56 doub 178 n y C17 C16 J56 sing 179 n y C8 N4 J56 doub 180 n y C N J56 sing 181 n y C16 C15 J56 doub 182 n y C11 C10 J56 sing 183 n y C10 N3 J56 sing 184 n y N C1 J56 doub 185 n y N4 N3 J56 sing 186 n y C15 C1 J56 sing 187 n y N3 C7 J56 sing 188 n n C1 N1 J56 sing 189 n n O C6 J56 doub 190 n n C7 C6 J56 sing 191 n n N1 C2 J56 sing 192 n n C6 N2 J56 sing 193 n n O1 C2 J56 doub 194 n n C2 C3 J56 sing 195 n n N2 C3 J56 sing 196 n n N2 C5 J56 sing 197 n n C3 S J56 sing 198 n n C5 C4 J56 sing 199 n n S C4 J56 sing 200 n n N1 H1 J56 sing 201 n n C15 H2 J56 sing 202 n n C16 H3 J56 sing 203 n n C17 H4 J56 sing 204 n n C3 H5 J56 sing 205 n n C5 H6 J56 sing 206 n n C5 H7 J56 sing 207 n n C4 H8 J56 sing 208 n n C4 H9 J56 sing 209 n n C7 H10 J56 sing 210 n n C7 H11 J56 sing 211 n n C11 H12 J56 sing 212 n n C12 H13 J56 sing 213 n n C13 H14 J56 sing 214 n n C14 H15 J56 sing 215 n n C8 H16 J56 sing 216 n n # _atom_sites.entry_id 5TCC _atom_sites.fract_transf_matrix[1][1] 0.010113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 J56 A 1 500 500 J56 J56 . I 2 J56 B 1 500 500 J56 J56 . J 2 J56 C 1 301 500 J56 J56 . K 2 J56 C 1 302 1 J56 J56 . L 2 J56 D 1 500 500 J56 J56 . M 2 J56 E 1 301 500 J56 J56 . N 2 J56 E 1 302 2 J56 J56 . O 2 J56 F 1 500 500 J56 J56 . P 2 J56 G 1 500 500 J56 J56 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 J56 . . . H 2 -10.651 23.554 75.309 1 67.47 ? O1 J56 500 A 1 HETATM 2 C C2 J56 . . . H 2 -11.842 23.554 75.622 1 65.62 ? C2 J56 500 A 1 HETATM 3 N N1 J56 . . . H 2 -12.761 24.42 75.138 1 67 ? N1 J56 500 A 1 HETATM 4 C C1 J56 . . . H 2 -12.634 25.281 74.037 1 68.68 ? C1 J56 500 A 1 HETATM 5 N N J56 . . . H 2 -13.786 25.443 73.378 1 69.9 ? N J56 500 A 1 HETATM 6 C C15 J56 . . . H 2 -11.427 25.865 73.621 1 68.84 ? C15 J56 500 A 1 HETATM 7 C C16 J56 . . . H 2 -11.441 26.619 72.462 1 68.76 ? C16 J56 500 A 1 HETATM 8 C C17 J56 . . . H 2 -12.62 26.785 71.755 1 70.34 ? C17 J56 500 A 1 HETATM 9 C C J56 . . . H 2 -13.743 26.166 72.272 1 72.97 ? C J56 500 A 1 HETATM 10 BR BR J56 . . . H 2 -15.384 26.311 71.32 1 80.23 ? BR J56 500 A 1 HETATM 11 C C3 J56 . . . H 2 -12.407 22.476 76.584 1 62.24 ? C3 J56 500 A 1 HETATM 12 N N2 J56 . . . H 2 -11.596 21.236 76.401 1 58.21 ? N2 J56 500 A 1 HETATM 13 C C5 J56 . . . H 2 -10.829 20.885 77.607 1 59.1 ? C5 J56 500 A 1 HETATM 14 C C4 J56 . . . H 2 -10.64 22.112 78.45 1 60.96 ? C4 J56 500 A 1 HETATM 15 S S J56 . . . H 2 -12.216 22.983 78.323 1 63.67 ? S J56 500 A 1 HETATM 16 C C6 J56 . . . H 2 -11.591 20.569 75.219 1 54.77 ? C6 J56 500 A 1 HETATM 17 O O J56 . . . H 2 -12.241 20.95 74.259 1 52.86 ? O J56 500 A 1 HETATM 18 C C7 J56 . . . H 2 -10.716 19.323 75.11 1 53.52 ? C7 J56 500 A 1 HETATM 19 N N3 J56 . . . H 2 -10.595 18.7 73.812 1 51.01 ? N3 J56 500 A 1 HETATM 20 C C10 J56 . . . H 2 -9.719 19.014 72.816 1 49.96 ? C10 J56 500 A 1 HETATM 21 C C11 J56 . . . H 2 -8.61 19.852 72.767 1 47.7 ? C11 J56 500 A 1 HETATM 22 C C12 J56 . . . H 2 -7.928 19.977 71.564 1 49.79 ? C12 J56 500 A 1 HETATM 23 C C13 J56 . . . H 2 -8.358 19.293 70.423 1 52.21 ? C13 J56 500 A 1 HETATM 24 C C14 J56 . . . H 2 -9.459 18.45 70.476 1 52.07 ? C14 J56 500 A 1 HETATM 25 C C9 J56 . . . H 2 -10.149 18.292 71.682 1 51.58 ? C9 J56 500 A 1 HETATM 26 C C8 J56 . . . H 2 -11.276 17.557 72.132 1 51.17 ? C8 J56 500 A 1 HETATM 27 N N4 J56 . . . H 2 -11.536 17.796 73.396 1 50.36 ? N4 J56 500 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #