data_5TCC
#
_model_server_result.job_id            wzCNe-z8ZGoAHiQH0KW_Qw 
_model_server_result.datetime_utc      '2025-07-07 23:25:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tcc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":500}' 
#
_entry.id    5TCC 
#
_exptl.entry_id    5TCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              446.321 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-N-(6-bromopyridin-2-yl)-3-[(1H-indazol-1-yl)acetyl]-1,3-thiazolidine-2-carboxamide 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TCC 
_cell.length_a            98.886 
_cell.length_b            143.745 
_cell.length_c            346.166 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H 1 1 
B,I 2 1 
C,J,K 3 1 
D,L 4 1 
E,M,N 5 1 
F,O 6 1 
G,P 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 41 1_555 A SG CYS 42 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 123 A CYS 138 1_555 A SG CYS 189 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 154 A CYS 169 1_555 A SG CYS 170 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 179 A CYS 194 1_555 A SG CYS 204 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 B SG CYS 26 B CYS 41 1_555 B SG CYS 42 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 B SG CYS 123 B CYS 138 1_555 B SG CYS 189 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 B SG CYS 154 B CYS 169 1_555 B SG CYS 170 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 179 B CYS 194 1_555 B SG CYS 204 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf9 C SG CYS 26 C CYS 41 1_555 C SG CYS 42 C CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 C SG CYS 123 C CYS 138 1_555 C SG CYS 189 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf11 C SG CYS 154 C CYS 169 1_555 C SG CYS 170 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf12 C SG CYS 179 C CYS 194 1_555 C SG CYS 204 C CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf13 D SG CYS 26 D CYS 41 1_555 D SG CYS 42 D CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf14 D SG CYS 123 D CYS 138 1_555 D SG CYS 189 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 D SG CYS 154 D CYS 169 1_555 D SG CYS 170 D CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf16 D SG CYS 179 D CYS 194 1_555 D SG CYS 204 D CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf17 E SG CYS 26 E CYS 41 1_555 E SG CYS 42 E CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf18 E SG CYS 123 E CYS 138 1_555 E SG CYS 189 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf19 E SG CYS 154 E CYS 169 1_555 E SG CYS 170 E CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf20 E SG CYS 179 E CYS 194 1_555 E SG CYS 204 E CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf21 F SG CYS 26 F CYS 41 1_555 F SG CYS 42 F CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf22 F SG CYS 123 F CYS 138 1_555 F SG CYS 189 F CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf23 F SG CYS 154 F CYS 169 1_555 F SG CYS 170 F CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf24 F SG CYS 179 F CYS 194 1_555 F SG CYS 204 F CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf25 G SG CYS 26 G CYS 41 1_555 G SG CYS 42 G CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf26 G SG CYS 123 G CYS 138 1_555 G SG CYS 189 G CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf27 G SG CYS 154 G CYS 169 1_555 G SG CYS 170 G CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf28 G SG CYS 179 G CYS 194 1_555 G SG CYS 204 G CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
#
_chem_comp.formula           'C18 H16 Br N5 O2 S' 
_chem_comp.formula_weight    446.321 
_chem_comp.id                J56 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-N-(6-bromopyridin-2-yl)-3-[(1H-indazol-1-yl)acetyl]-1,3-thiazolidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 J56 doub 171 n y 
C13 C12 J56 sing 172 n y 
C14 C9 J56 sing 173 n y 
BR C J56 sing 174 n n 
C12 C11 J56 doub 175 n y 
C9 C8 J56 sing 176 n y 
C9 C10 J56 doub 177 n y 
C17 C J56 doub 178 n y 
C17 C16 J56 sing 179 n y 
C8 N4 J56 doub 180 n y 
C N J56 sing 181 n y 
C16 C15 J56 doub 182 n y 
C11 C10 J56 sing 183 n y 
C10 N3 J56 sing 184 n y 
N C1 J56 doub 185 n y 
N4 N3 J56 sing 186 n y 
C15 C1 J56 sing 187 n y 
N3 C7 J56 sing 188 n n 
C1 N1 J56 sing 189 n n 
O C6 J56 doub 190 n n 
C7 C6 J56 sing 191 n n 
N1 C2 J56 sing 192 n n 
C6 N2 J56 sing 193 n n 
O1 C2 J56 doub 194 n n 
C2 C3 J56 sing 195 n n 
N2 C3 J56 sing 196 n n 
N2 C5 J56 sing 197 n n 
C3 S J56 sing 198 n n 
C5 C4 J56 sing 199 n n 
S C4 J56 sing 200 n n 
N1 H1 J56 sing 201 n n 
C15 H2 J56 sing 202 n n 
C16 H3 J56 sing 203 n n 
C17 H4 J56 sing 204 n n 
C3 H5 J56 sing 205 n n 
C5 H6 J56 sing 206 n n 
C5 H7 J56 sing 207 n n 
C4 H8 J56 sing 208 n n 
C4 H9 J56 sing 209 n n 
C7 H10 J56 sing 210 n n 
C7 H11 J56 sing 211 n n 
C11 H12 J56 sing 212 n n 
C12 H13 J56 sing 213 n n 
C13 H14 J56 sing 214 n n 
C14 H15 J56 sing 215 n n 
C8 H16 J56 sing 216 n n 
#
_atom_sites.entry_id                     5TCC 
_atom_sites.fract_transf_matrix[1][1]    0.010113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006957 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002889 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 J56 A 1 500 500 J56 J56 . 
I 2 J56 B 1 500 500 J56 J56 . 
J 2 J56 C 1 301 500 J56 J56 . 
K 2 J56 C 1 302 1 J56 J56 . 
L 2 J56 D 1 500 500 J56 J56 . 
M 2 J56 E 1 301 500 J56 J56 . 
N 2 J56 E 1 302 2 J56 J56 . 
O 2 J56 F 1 500 500 J56 J56 . 
P 2 J56 G 1 500 500 J56 J56 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 J56 . . . O 2 23.504 -18.998 26.703 1 66.42 ? O1 J56 500 F 1 
HETATM 2 C C2 J56 . . . O 2 23.118 -20.081 26.268 1 64.4 ? C2 J56 500 F 1 
HETATM 3 N N1 J56 . . . O 2 23.523 -21.281 26.738 1 64.03 ? N1 J56 500 F 1 
HETATM 4 C C1 J56 . . . O 2 24.249 -21.55 27.907 1 66.21 ? C1 J56 500 F 1 
HETATM 5 N N J56 . . . O 2 23.932 -22.729 28.458 1 70.75 ? N J56 500 F 1 
HETATM 6 C C15 J56 . . . O 2 25.173 -20.667 28.476 1 67.06 ? C15 J56 500 F 1 
HETATM 7 C C16 J56 . . . O 2 25.757 -21.03 29.677 1 69.98 ? C16 J56 500 F 1 
HETATM 8 C C17 J56 . . . O 2 25.43 -22.235 30.275 1 73.34 ? C17 J56 500 F 1 
HETATM 9 C C J56 . . . O 2 24.514 -23.027 29.61 1 76.78 ? C J56 500 F 1 
HETATM 10 BR BR J56 . . . O 2 23.986 -24.677 30.407 1 86.85 ? BR J56 500 F 1 
HETATM 11 C C3 J56 . . . O 2 22.05 -20.138 25.143 1 63.6 ? C3 J56 500 F 1 
HETATM 12 N N2 J56 . . . O 2 21.192 -18.931 25.286 1 63.58 ? N2 J56 500 F 1 
HETATM 13 C C5 J56 . . . O 2 21.31 -17.991 24.158 1 63.31 ? C5 J56 500 F 1 
HETATM 14 C C4 J56 . . . O 2 22.59 -18.255 23.427 1 63.17 ? C4 J56 500 F 1 
HETATM 15 S S J56 . . . O 2 22.765 -20.05 23.47 1 64.08 ? S J56 500 F 1 
HETATM 16 C C6 J56 . . . O 2 20.395 -18.797 26.374 1 63.75 ? C6 J56 500 F 1 
HETATM 17 O O J56 . . . O 2 20.383 -19.624 27.276 1 64.14 ? O J56 500 F 1 
HETATM 18 C C7 J56 . . . O 2 19.503 -17.562 26.452 1 63.14 ? C7 J56 500 F 1 
HETATM 19 N N3 J56 . . . O 2 18.809 -17.328 27.698 1 62.01 ? N3 J56 500 F 1 
HETATM 20 C C10 J56 . . . O 2 19.287 -16.707 28.814 1 60.01 ? C10 J56 500 F 1 
HETATM 21 C C11 J56 . . . O 2 20.46 -16.003 29.073 1 58.15 ? C11 J56 500 F 1 
HETATM 22 C C12 J56 . . . O 2 20.668 -15.502 30.35 1 59.57 ? C12 J56 500 F 1 
HETATM 23 C C13 J56 . . . O 2 19.729 -15.714 31.361 1 60.7 ? C13 J56 500 F 1 
HETATM 24 C C14 J56 . . . O 2 18.557 -16.411 31.1 1 60.69 ? C14 J56 500 F 1 
HETATM 25 C C9 J56 . . . O 2 18.318 -16.912 29.817 1 60.52 ? C9 J56 500 F 1 
HETATM 26 C C8 J56 . . . O 2 17.29 -17.651 29.175 1 60.6 ? C8 J56 500 F 1 
HETATM 27 N N4 J56 . . . O 2 17.581 -17.893 27.919 1 61.59 ? N4 J56 500 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#