data_5TCK
#
_model_server_result.job_id            2dRbOiyXyYqTYKsFO_6gjg 
_model_server_result.datetime_utc      '2024-11-28 21:20:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tck 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    5TCK 
#
_exptl.entry_id    5TCK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TCK 
_cell.length_a            34.245 
_cell.length_b            74.086 
_cell.length_c            106.412 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TCK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 62 A CYS 205 1_555 D S2 BME . A BME 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale2 A SG CYS 110 A CYS 253 1_555 E S SX . A SX 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
covale ? covale3 B SG CYS 62 B CYS 205 1_555 H S2 BME . B BME 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale4 B SG CYS 110 B CYS 253 1_555 I S SX . B SX 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     5TCK 
_atom_sites.fract_transf_matrix[1][1]    0.029201 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013498 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BMF A 1 401 802 BMF BMF . 
D 3 BME A 1 402 1 BME BME . 
E 4 SX A 1 403 2 SX SX . 
F 5 EDO A 1 404 2003 EDO EDO . 
G 2 BMF B 1 801 801 BMF BMF . 
H 3 BME B 1 802 3 BME BME . 
I 4 SX B 1 803 4 SX SX . 
J 5 EDO B 1 804 2002 EDO EDO . 
K 6 HOH A 1 501 58 HOH HOH . 
K 6 HOH A 2 502 2061 HOH HOH . 
K 6 HOH A 3 503 2142 HOH HOH . 
K 6 HOH A 4 504 2048 HOH HOH . 
K 6 HOH A 5 505 20 HOH HOH . 
K 6 HOH A 6 506 2056 HOH HOH . 
K 6 HOH A 7 507 2094 HOH HOH . 
K 6 HOH A 8 508 2100 HOH HOH . 
K 6 HOH A 9 509 2109 HOH HOH . 
K 6 HOH A 10 510 2022 HOH HOH . 
K 6 HOH A 11 511 2036 HOH HOH . 
K 6 HOH A 12 512 15 HOH HOH . 
K 6 HOH A 13 513 2103 HOH HOH . 
K 6 HOH A 14 514 2133 HOH HOH . 
K 6 HOH A 15 515 59 HOH HOH . 
K 6 HOH A 16 516 2093 HOH HOH . 
K 6 HOH A 17 517 2150 HOH HOH . 
K 6 HOH A 18 518 26 HOH HOH . 
K 6 HOH A 19 519 27 HOH HOH . 
K 6 HOH A 20 520 2070 HOH HOH . 
K 6 HOH A 21 521 2322 HOH HOH . 
K 6 HOH A 22 522 33 HOH HOH . 
K 6 HOH A 23 523 2146 HOH HOH . 
K 6 HOH A 24 524 2067 HOH HOH . 
K 6 HOH A 25 525 2307 HOH HOH . 
K 6 HOH A 26 526 4 HOH HOH . 
K 6 HOH A 27 527 2134 HOH HOH . 
K 6 HOH A 28 528 47 HOH HOH . 
K 6 HOH A 29 529 2012 HOH HOH . 
K 6 HOH A 30 530 2040 HOH HOH . 
K 6 HOH A 31 531 30 HOH HOH . 
K 6 HOH A 32 532 2135 HOH HOH . 
K 6 HOH A 33 533 16 HOH HOH . 
K 6 HOH A 34 534 2041 HOH HOH . 
K 6 HOH A 35 535 2309 HOH HOH . 
K 6 HOH A 36 536 2108 HOH HOH . 
K 6 HOH A 37 537 2084 HOH HOH . 
K 6 HOH A 38 538 3 HOH HOH . 
K 6 HOH A 39 539 2019 HOH HOH . 
K 6 HOH A 40 540 2164 HOH HOH . 
K 6 HOH A 41 541 13 HOH HOH . 
K 6 HOH A 42 542 2099 HOH HOH . 
K 6 HOH A 43 543 2168 HOH HOH . 
K 6 HOH A 44 544 2128 HOH HOH . 
K 6 HOH A 45 545 2015 HOH HOH . 
K 6 HOH A 46 546 57 HOH HOH . 
K 6 HOH A 47 547 2163 HOH HOH . 
K 6 HOH A 48 548 2083 HOH HOH . 
K 6 HOH A 49 549 2011 HOH HOH . 
K 6 HOH A 50 550 2167 HOH HOH . 
K 6 HOH A 51 551 2152 HOH HOH . 
K 6 HOH A 52 552 2110 HOH HOH . 
K 6 HOH A 53 553 2126 HOH HOH . 
K 6 HOH A 54 554 2046 HOH HOH . 
K 6 HOH A 55 555 2132 HOH HOH . 
K 6 HOH A 56 556 2131 HOH HOH . 
K 6 HOH A 57 557 2111 HOH HOH . 
K 6 HOH A 58 558 60 HOH HOH . 
K 6 HOH A 59 559 2320 HOH HOH . 
K 6 HOH A 60 560 2092 HOH HOH . 
K 6 HOH A 61 561 2162 HOH HOH . 
K 6 HOH A 62 562 2308 HOH HOH . 
K 6 HOH A 63 563 2144 HOH HOH . 
K 6 HOH A 64 564 11 HOH HOH . 
K 6 HOH A 65 565 31 HOH HOH . 
K 6 HOH A 66 566 2149 HOH HOH . 
K 6 HOH A 67 567 2101 HOH HOH . 
K 6 HOH A 68 568 2130 HOH HOH . 
K 6 HOH A 69 569 61 HOH HOH . 
K 6 HOH A 70 570 5 HOH HOH . 
K 6 HOH A 71 571 17 HOH HOH . 
K 6 HOH A 72 572 56 HOH HOH . 
K 6 HOH A 73 573 2121 HOH HOH . 
K 6 HOH A 74 574 2068 HOH HOH . 
K 6 HOH A 75 575 6 HOH HOH . 
K 6 HOH A 76 576 2075 HOH HOH . 
K 6 HOH A 77 577 2124 HOH HOH . 
K 6 HOH A 78 578 55 HOH HOH . 
K 6 HOH A 79 579 19 HOH HOH . 
K 6 HOH A 80 580 2169 HOH HOH . 
K 6 HOH A 81 581 2310 HOH HOH . 
K 6 HOH A 82 582 2321 HOH HOH . 
K 6 HOH A 83 583 2039 HOH HOH . 
K 6 HOH A 84 584 2082 HOH HOH . 
K 6 HOH A 85 585 29 HOH HOH . 
K 6 HOH A 86 586 2125 HOH HOH . 
K 6 HOH A 87 587 54 HOH HOH . 
K 6 HOH A 88 588 53 HOH HOH . 
K 6 HOH A 89 589 2105 HOH HOH . 
L 6 HOH B 1 901 2090 HOH HOH . 
L 6 HOH B 2 902 48 HOH HOH . 
L 6 HOH B 3 903 22 HOH HOH . 
L 6 HOH B 4 904 43 HOH HOH . 
L 6 HOH B 5 905 2319 HOH HOH . 
L 6 HOH B 6 906 2031 HOH HOH . 
L 6 HOH B 7 907 35 HOH HOH . 
L 6 HOH B 8 908 2076 HOH HOH . 
L 6 HOH B 9 909 38 HOH HOH . 
L 6 HOH B 10 910 2127 HOH HOH . 
L 6 HOH B 11 911 2137 HOH HOH . 
L 6 HOH B 12 912 2025 HOH HOH . 
L 6 HOH B 13 913 2148 HOH HOH . 
L 6 HOH B 14 914 2073 HOH HOH . 
L 6 HOH B 15 915 2081 HOH HOH . 
L 6 HOH B 16 916 2161 HOH HOH . 
L 6 HOH B 17 917 2301 HOH HOH . 
L 6 HOH B 18 918 2138 HOH HOH . 
L 6 HOH B 19 919 2089 HOH HOH . 
L 6 HOH B 20 920 7 HOH HOH . 
L 6 HOH B 21 921 2305 HOH HOH . 
L 6 HOH B 22 922 2140 HOH HOH . 
L 6 HOH B 23 923 40 HOH HOH . 
L 6 HOH B 24 924 2119 HOH HOH . 
L 6 HOH B 25 925 2020 HOH HOH . 
L 6 HOH B 26 926 23 HOH HOH . 
L 6 HOH B 27 927 2324 HOH HOH . 
L 6 HOH B 28 928 9 HOH HOH . 
L 6 HOH B 29 929 2136 HOH HOH . 
L 6 HOH B 30 930 2139 HOH HOH . 
L 6 HOH B 31 931 42 HOH HOH . 
L 6 HOH B 32 932 2030 HOH HOH . 
L 6 HOH B 33 933 2157 HOH HOH . 
L 6 HOH B 34 934 2014 HOH HOH . 
L 6 HOH B 35 935 2095 HOH HOH . 
L 6 HOH B 36 936 2156 HOH HOH . 
L 6 HOH B 37 937 2311 HOH HOH . 
L 6 HOH B 38 938 2155 HOH HOH . 
L 6 HOH B 39 939 41 HOH HOH . 
L 6 HOH B 40 940 2116 HOH HOH . 
L 6 HOH B 41 941 2143 HOH HOH . 
L 6 HOH B 42 942 2028 HOH HOH . 
L 6 HOH B 43 943 44 HOH HOH . 
L 6 HOH B 44 944 2085 HOH HOH . 
L 6 HOH B 45 945 2141 HOH HOH . 
L 6 HOH B 46 946 2033 HOH HOH . 
L 6 HOH B 47 947 2106 HOH HOH . 
L 6 HOH B 48 948 39 HOH HOH . 
L 6 HOH B 49 949 2096 HOH HOH . 
L 6 HOH B 50 950 2065 HOH HOH . 
L 6 HOH B 51 951 2159 HOH HOH . 
L 6 HOH B 52 952 2112 HOH HOH . 
L 6 HOH B 53 953 2313 HOH HOH . 
L 6 HOH B 54 954 2004 HOH HOH . 
L 6 HOH B 55 955 1 HOH HOH . 
L 6 HOH B 56 956 2058 HOH HOH . 
L 6 HOH B 57 957 49 HOH HOH . 
L 6 HOH B 58 958 2151 HOH HOH . 
L 6 HOH B 59 959 2044 HOH HOH . 
L 6 HOH B 60 960 2323 HOH HOH . 
L 6 HOH B 61 961 2304 HOH HOH . 
L 6 HOH B 62 962 2072 HOH HOH . 
L 6 HOH B 63 963 2018 HOH HOH . 
L 6 HOH B 64 964 2166 HOH HOH . 
L 6 HOH B 65 965 2059 HOH HOH . 
L 6 HOH B 66 966 2034 HOH HOH . 
L 6 HOH B 67 967 2154 HOH HOH . 
L 6 HOH B 68 968 2123 HOH HOH . 
L 6 HOH B 69 969 2057 HOH HOH . 
L 6 HOH B 70 970 2032 HOH HOH . 
L 6 HOH B 71 971 2074 HOH HOH . 
L 6 HOH B 72 972 2314 HOH HOH . 
L 6 HOH B 73 973 25 HOH HOH . 
L 6 HOH B 74 974 36 HOH HOH . 
L 6 HOH B 75 975 24 HOH HOH . 
L 6 HOH B 76 976 2145 HOH HOH . 
L 6 HOH B 77 977 2312 HOH HOH . 
L 6 HOH B 78 978 2160 HOH HOH . 
L 6 HOH B 79 979 2158 HOH HOH . 
L 6 HOH B 80 980 2 HOH HOH . 
L 6 HOH B 81 981 2325 HOH HOH . 
L 6 HOH B 82 982 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 5 23.203 59.184 22.662 1 69.22 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . F 5 24.495 59.746 22.798 1 70.1 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . F 5 23.317 57.764 22.059 1 68.61 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . F 5 23.44 56.798 23.084 1 68.3 ? O2 EDO 404 A 1 
HETATM 5 H H11 EDO . . . F 5 22.53 59.811 22.079 1 68.9 ? H11 EDO 404 A 1 
HETATM 6 H H12 EDO . . . F 5 22.813 59.147 23.677 1 69.49 ? H12 EDO 404 A 1 
HETATM 7 H HO1 EDO . . . F 5 24.394 60.6 23.294 1 70.23 ? HO1 EDO 404 A 1 
HETATM 8 H H21 EDO . . . F 5 24.232 57.664 21.478 1 68.7 ? H21 EDO 404 A 1 
HETATM 9 H H22 EDO . . . F 5 22.485 57.557 21.39 1 68.61 ? H22 EDO 404 A 1 
HETATM 10 H HO2 EDO . . . F 5 23.148 55.928 22.703 1 68.05 ? HO2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#