data_5TCO # _model_server_result.job_id uhT0NdEdiUjo5u2ZlsOaAQ _model_server_result.datetime_utc '2024-12-26 13:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5TCO # _exptl.entry_id 5TCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 592.659 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-[(3-benzamido-4-fluoranyl-phenyl)amino]-~{N}-(2-morpholin-4-ylethyl)-11-oxidanylidene-5,6-dihydrodibenzo[1,2-~{d}:1',2'-~{f}][7]annulene-9-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TCO _cell.length_a 66.07 _cell.length_b 69.75 _cell.length_c 74.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H33 F N4 O4' _chem_comp.formula_weight 592.659 _chem_comp.id 79Q _chem_comp.mon_nstd_flag . _chem_comp.name "3-[(3-benzamido-4-fluoranyl-phenyl)amino]-~{N}-(2-morpholin-4-ylethyl)-11-oxidanylidene-5,6-dihydrodibenzo[1,2-~{d}:1',2'-~{f}][7]annulene-9-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OBD 79Q sing 1 n n CAT CAY 79Q sing 2 n n OBD CAU 79Q sing 3 n n CAU CAZ 79Q sing 4 n n CAY NBR 79Q sing 5 n n CAZ NBR 79Q sing 6 n n NBR CAX 79Q sing 7 n n OAA CBE 79Q doub 8 n n CBE NBA 79Q sing 9 n n CBE CBL 79Q sing 10 n n NBA CAS 79Q sing 11 n n CAX CAS 79Q sing 12 n n OAC CBG 79Q doub 13 n n CBL CAR 79Q doub 14 n y CBL CAM 79Q sing 15 n y CAR CBQ 79Q sing 16 n y CAM CAN 79Q doub 17 n y CBG CBQ 79Q sing 18 n n CBG CBP 79Q sing 19 n n CBQ CBM 79Q doub 20 n y CAN CBM 79Q sing 21 n y CBM CAV 79Q sing 22 n n CAO CBP 79Q doub 23 n y CAO CAK 79Q sing 24 n y CBP CBN 79Q sing 25 n y CAV CAW 79Q sing 26 n n CAK CBH 79Q doub 27 n y CBN CAW 79Q sing 28 n n CBN CAP 79Q doub 29 n y CBH CAP 79Q sing 30 n y CBH NBC 79Q sing 31 n n CAJ CAL 79Q doub 32 n y CAJ CBI 79Q sing 33 n y NBC CBI 79Q sing 34 n n CAL CBJ 79Q sing 35 n y CBI CAQ 79Q doub 36 n y CBJ FAD 79Q sing 37 n n CBJ CBO 79Q doub 38 n y CAQ CBO 79Q sing 39 n y CBO NBB 79Q sing 40 n n OAB CBF 79Q doub 41 n n CBF NBB 79Q sing 42 n n CBF CBK 79Q sing 43 n n CAI CBK 79Q doub 44 n y CAI CAG 79Q sing 45 n y CBK CAH 79Q sing 46 n y CAG CAE 79Q doub 47 n y CAH CAF 79Q doub 48 n y CAE CAF 79Q sing 49 n y CAY H1 79Q sing 50 n n CAY H2 79Q sing 51 n n CAT H3 79Q sing 52 n n CAT H4 79Q sing 53 n n CAU H5 79Q sing 54 n n CAU H6 79Q sing 55 n n CAZ H7 79Q sing 56 n n CAZ H8 79Q sing 57 n n CAX H10 79Q sing 58 n n CAX H11 79Q sing 59 n n CAS H12 79Q sing 60 n n CAS H13 79Q sing 61 n n NBA H14 79Q sing 62 n n CAR H15 79Q sing 63 n n CAM H16 79Q sing 64 n n CAN H17 79Q sing 65 n n CAV H18 79Q sing 66 n n CAV H19 79Q sing 67 n n CAW H20 79Q sing 68 n n CAW H21 79Q sing 69 n n CAP H22 79Q sing 70 n n CAO H23 79Q sing 71 n n CAK H24 79Q sing 72 n n NBC H25 79Q sing 73 n n CAQ H26 79Q sing 74 n n CAJ H27 79Q sing 75 n n CAL H28 79Q sing 76 n n NBB H29 79Q sing 77 n n CAH H30 79Q sing 78 n n CAF H31 79Q sing 79 n n CAE H32 79Q sing 80 n n CAG H33 79Q sing 81 n n CAI H34 79Q sing 82 n n # _atom_sites.entry_id 5TCO _atom_sites.fract_transf_matrix[1][1] 0.015135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 79Q A 1 401 1 79Q DRG . C 3 BOG A 1 402 1000 BOG BOG . D 3 BOG A 1 403 1001 BOG BOG . E 4 HOH A 1 501 14 HOH HOH . E 4 HOH A 2 502 37 HOH HOH . E 4 HOH A 3 503 4 HOH HOH . E 4 HOH A 4 504 64 HOH HOH . E 4 HOH A 5 505 49 HOH HOH . E 4 HOH A 6 506 19 HOH HOH . E 4 HOH A 7 507 5 HOH HOH . E 4 HOH A 8 508 46 HOH HOH . E 4 HOH A 9 509 10 HOH HOH . E 4 HOH A 10 510 30 HOH HOH . E 4 HOH A 11 511 7 HOH HOH . E 4 HOH A 12 512 17 HOH HOH . E 4 HOH A 13 513 65 HOH HOH . E 4 HOH A 14 514 50 HOH HOH . E 4 HOH A 15 515 9 HOH HOH . E 4 HOH A 16 516 36 HOH HOH . E 4 HOH A 17 517 40 HOH HOH . E 4 HOH A 18 518 66 HOH HOH . E 4 HOH A 19 519 44 HOH HOH . E 4 HOH A 20 520 8 HOH HOH . E 4 HOH A 21 521 56 HOH HOH . E 4 HOH A 22 522 2 HOH HOH . E 4 HOH A 23 523 31 HOH HOH . E 4 HOH A 24 524 22 HOH HOH . E 4 HOH A 25 525 53 HOH HOH . E 4 HOH A 26 526 51 HOH HOH . E 4 HOH A 27 527 42 HOH HOH . E 4 HOH A 28 528 11 HOH HOH . E 4 HOH A 29 529 45 HOH HOH . E 4 HOH A 30 530 21 HOH HOH . E 4 HOH A 31 531 20 HOH HOH . E 4 HOH A 32 532 43 HOH HOH . E 4 HOH A 33 533 15 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 60 HOH HOH . E 4 HOH A 36 536 27 HOH HOH . E 4 HOH A 37 537 16 HOH HOH . E 4 HOH A 38 538 62 HOH HOH . E 4 HOH A 39 539 59 HOH HOH . E 4 HOH A 40 540 24 HOH HOH . E 4 HOH A 41 541 57 HOH HOH . E 4 HOH A 42 542 6 HOH HOH . E 4 HOH A 43 543 41 HOH HOH . E 4 HOH A 44 544 29 HOH HOH . E 4 HOH A 45 545 48 HOH HOH . E 4 HOH A 46 546 55 HOH HOH . E 4 HOH A 47 547 39 HOH HOH . E 4 HOH A 48 548 33 HOH HOH . E 4 HOH A 49 549 38 HOH HOH . E 4 HOH A 50 550 13 HOH HOH . E 4 HOH A 51 551 3 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 47 HOH HOH . E 4 HOH A 54 554 23 HOH HOH . E 4 HOH A 55 555 32 HOH HOH . E 4 HOH A 56 556 25 HOH HOH . E 4 HOH A 57 557 35 HOH HOH . E 4 HOH A 58 558 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAY 79Q . . . B 2 22.621 10.703 -29.018 1 79.49 ? CAY 79Q 401 A 1 HETATM 2 C CAT 79Q . . . B 2 22.118 10.845 -30.358 1 79.3 ? CAT 79Q 401 A 1 HETATM 3 O OBD 79Q . . . B 2 20.792 11.509 -30.321 1 77.71 ? OBD 79Q 401 A 1 HETATM 4 C CAU 79Q . . . B 2 19.747 10.768 -29.734 1 77.99 ? CAU 79Q 401 A 1 HETATM 5 C CAZ 79Q . . . B 2 20.355 10.066 -28.49 1 78.88 ? CAZ 79Q 401 A 1 HETATM 6 N NBR 79Q . . . B 2 21.511 10.851 -28.092 1 76.83 ? NBR 79Q 401 A 1 HETATM 7 C CAX 79Q . . . B 2 22.002 10.441 -26.747 1 68.34 ? CAX 79Q 401 A 1 HETATM 8 C CAS 79Q . . . B 2 21.344 9.147 -26.148 1 57.64 ? CAS 79Q 401 A 1 HETATM 9 N NBA 79Q . . . B 2 21.767 7.994 -27.007 1 46.29 ? NBA 79Q 401 A 1 HETATM 10 C CBE 79Q . . . B 2 21.335 6.706 -27.12 1 35.5 ? CBE 79Q 401 A 1 HETATM 11 O OAA 79Q . . . B 2 21.955 6 -27.906 1 26.8 ? OAA 79Q 401 A 1 HETATM 12 C CBL 79Q . . . B 2 20.348 6.094 -26.27 1 32.09 ? CBL 79Q 401 A 1 HETATM 13 C CAR 79Q . . . B 2 20.35 4.679 -26.208 1 29.86 ? CAR 79Q 401 A 1 HETATM 14 C CBQ 79Q . . . B 2 19.441 3.962 -25.407 1 27.83 ? CBQ 79Q 401 A 1 HETATM 15 C CBG 79Q . . . B 2 19.55 2.552 -25.407 1 26.61 ? CBG 79Q 401 A 1 HETATM 16 O OAC 79Q . . . B 2 19.809 1.985 -26.471 1 26.16 ? OAC 79Q 401 A 1 HETATM 17 C CAM 79Q . . . B 2 19.399 6.772 -25.48 1 30.55 ? CAM 79Q 401 A 1 HETATM 18 C CAN 79Q . . . B 2 18.5 6.07 -24.678 1 29.64 ? CAN 79Q 401 A 1 HETATM 19 C CBM 79Q . . . B 2 18.528 4.666 -24.658 1 27.74 ? CBM 79Q 401 A 1 HETATM 20 C CAV 79Q . . . B 2 17.642 4.06 -23.803 1 26.32 ? CAV 79Q 401 A 1 HETATM 21 C CAW 79Q . . . B 2 18.562 3.602 -22.648 1 24.78 ? CAW 79Q 401 A 1 HETATM 22 C CBN 79Q . . . B 2 19.216 2.348 -22.917 1 24.38 ? CBN 79Q 401 A 1 HETATM 23 C CAP 79Q . . . B 2 19.418 1.566 -21.752 1 22.39 ? CAP 79Q 401 A 1 HETATM 24 C CBP 79Q . . . B 2 19.63 1.841 -24.163 1 24.8 ? CBP 79Q 401 A 1 HETATM 25 C CAO 79Q . . . B 2 20.268 0.566 -24.214 1 23.6 ? CAO 79Q 401 A 1 HETATM 26 C CAK 79Q . . . B 2 20.487 -0.202 -23.069 1 21.91 ? CAK 79Q 401 A 1 HETATM 27 C CBH 79Q . . . B 2 20.054 0.291 -21.825 1 23.05 ? CBH 79Q 401 A 1 HETATM 28 N NBC 79Q . . . B 2 20.219 -0.378 -20.642 1 23.69 ? NBC 79Q 401 A 1 HETATM 29 C CBI 79Q . . . B 2 20.969 -1.485 -20.439 1 23.22 ? CBI 79Q 401 A 1 HETATM 30 C CAQ 79Q . . . B 2 20.44 -2.382 -19.528 1 22.92 ? CAQ 79Q 401 A 1 HETATM 31 C CAJ 79Q . . . B 2 22.235 -1.773 -20.97 1 23.89 ? CAJ 79Q 401 A 1 HETATM 32 C CAL 79Q . . . B 2 22.902 -2.961 -20.637 1 23.92 ? CAL 79Q 401 A 1 HETATM 33 C CBJ 79Q . . . B 2 22.338 -3.844 -19.72 1 22.41 ? CBJ 79Q 401 A 1 HETATM 34 F FAD 79Q . . . B 2 22.994 -4.956 -19.403 1 22.81 ? FAD 79Q 401 A 1 HETATM 35 C CBO 79Q . . . B 2 21.089 -3.563 -19.165 1 21.92 ? CBO 79Q 401 A 1 HETATM 36 N NBB 79Q . . . B 2 20.574 -4.463 -18.292 1 19.51 ? NBB 79Q 401 A 1 HETATM 37 C CBF 79Q . . . B 2 19.263 -4.832 -18.305 1 18.58 ? CBF 79Q 401 A 1 HETATM 38 O OAB 79Q . . . B 2 18.473 -4.483 -19.16 1 15.33 ? OAB 79Q 401 A 1 HETATM 39 C CBK 79Q . . . B 2 18.842 -5.757 -17.306 1 19.48 ? CBK 79Q 401 A 1 HETATM 40 C CAH 79Q . . . B 2 19.149 -5.568 -15.936 1 21.91 ? CAH 79Q 401 A 1 HETATM 41 C CAF 79Q . . . B 2 18.719 -6.472 -14.935 1 21.53 ? CAF 79Q 401 A 1 HETATM 42 C CAE 79Q . . . B 2 18.016 -7.588 -15.314 1 18.14 ? CAE 79Q 401 A 1 HETATM 43 C CAG 79Q . . . B 2 17.731 -7.816 -16.644 1 19.86 ? CAG 79Q 401 A 1 HETATM 44 C CAI 79Q . . . B 2 18.133 -6.912 -17.647 1 19.76 ? CAI 79Q 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #