data_5TCO # _model_server_result.job_id hKi02wYOMDcemIxZ1DgKVQ _model_server_result.datetime_utc '2024-12-02 16:37:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5TCO # _exptl.entry_id 5TCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TCO _cell.length_a 66.07 _cell.length_b 69.75 _cell.length_c 74.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 152 n n C1 C2 BOG sing 153 n n C1 O5 BOG sing 154 n n C1 H1 BOG sing 155 n n O1 C1' BOG sing 156 n n C2 O2 BOG sing 157 n n C2 C3 BOG sing 158 n n C2 H2 BOG sing 159 n n O2 HO2 BOG sing 160 n n C3 O3 BOG sing 161 n n C3 C4 BOG sing 162 n n C3 H3 BOG sing 163 n n O3 HO3 BOG sing 164 n n C4 O4 BOG sing 165 n n C4 C5 BOG sing 166 n n C4 H4 BOG sing 167 n n O4 HO4 BOG sing 168 n n C5 O5 BOG sing 169 n n C5 C6 BOG sing 170 n n C5 H5 BOG sing 171 n n C6 O6 BOG sing 172 n n C6 H61 BOG sing 173 n n C6 H62 BOG sing 174 n n O6 HO6 BOG sing 175 n n C1' C2' BOG sing 176 n n C1' "H1'1" BOG sing 177 n n C1' "H1'2" BOG sing 178 n n C2' C3' BOG sing 179 n n C2' "H2'1" BOG sing 180 n n C2' "H2'2" BOG sing 181 n n C3' C4' BOG sing 182 n n C3' "H3'1" BOG sing 183 n n C3' "H3'2" BOG sing 184 n n C4' C5' BOG sing 185 n n C4' "H4'1" BOG sing 186 n n C4' "H4'2" BOG sing 187 n n C5' C6' BOG sing 188 n n C5' "H5'1" BOG sing 189 n n C5' "H5'2" BOG sing 190 n n C6' C7' BOG sing 191 n n C6' "H6'1" BOG sing 192 n n C6' "H6'2" BOG sing 193 n n C7' C8' BOG sing 194 n n C7' "H7'1" BOG sing 195 n n C7' "H7'2" BOG sing 196 n n C8' "H8'1" BOG sing 197 n n C8' "H8'2" BOG sing 198 n n C8' "H8'3" BOG sing 199 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5TCO _atom_sites.fract_transf_matrix[1][1] 0.015135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 79Q A 1 401 1 79Q DRG . C 3 BOG A 1 402 1000 BOG BOG . D 3 BOG A 1 403 1001 BOG BOG . E 4 HOH A 1 501 14 HOH HOH . E 4 HOH A 2 502 37 HOH HOH . E 4 HOH A 3 503 4 HOH HOH . E 4 HOH A 4 504 64 HOH HOH . E 4 HOH A 5 505 49 HOH HOH . E 4 HOH A 6 506 19 HOH HOH . E 4 HOH A 7 507 5 HOH HOH . E 4 HOH A 8 508 46 HOH HOH . E 4 HOH A 9 509 10 HOH HOH . E 4 HOH A 10 510 30 HOH HOH . E 4 HOH A 11 511 7 HOH HOH . E 4 HOH A 12 512 17 HOH HOH . E 4 HOH A 13 513 65 HOH HOH . E 4 HOH A 14 514 50 HOH HOH . E 4 HOH A 15 515 9 HOH HOH . E 4 HOH A 16 516 36 HOH HOH . E 4 HOH A 17 517 40 HOH HOH . E 4 HOH A 18 518 66 HOH HOH . E 4 HOH A 19 519 44 HOH HOH . E 4 HOH A 20 520 8 HOH HOH . E 4 HOH A 21 521 56 HOH HOH . E 4 HOH A 22 522 2 HOH HOH . E 4 HOH A 23 523 31 HOH HOH . E 4 HOH A 24 524 22 HOH HOH . E 4 HOH A 25 525 53 HOH HOH . E 4 HOH A 26 526 51 HOH HOH . E 4 HOH A 27 527 42 HOH HOH . E 4 HOH A 28 528 11 HOH HOH . E 4 HOH A 29 529 45 HOH HOH . E 4 HOH A 30 530 21 HOH HOH . E 4 HOH A 31 531 20 HOH HOH . E 4 HOH A 32 532 43 HOH HOH . E 4 HOH A 33 533 15 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 60 HOH HOH . E 4 HOH A 36 536 27 HOH HOH . E 4 HOH A 37 537 16 HOH HOH . E 4 HOH A 38 538 62 HOH HOH . E 4 HOH A 39 539 59 HOH HOH . E 4 HOH A 40 540 24 HOH HOH . E 4 HOH A 41 541 57 HOH HOH . E 4 HOH A 42 542 6 HOH HOH . E 4 HOH A 43 543 41 HOH HOH . E 4 HOH A 44 544 29 HOH HOH . E 4 HOH A 45 545 48 HOH HOH . E 4 HOH A 46 546 55 HOH HOH . E 4 HOH A 47 547 39 HOH HOH . E 4 HOH A 48 548 33 HOH HOH . E 4 HOH A 49 549 38 HOH HOH . E 4 HOH A 50 550 13 HOH HOH . E 4 HOH A 51 551 3 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 47 HOH HOH . E 4 HOH A 54 554 23 HOH HOH . E 4 HOH A 55 555 32 HOH HOH . E 4 HOH A 56 556 25 HOH HOH . E 4 HOH A 57 557 35 HOH HOH . E 4 HOH A 58 558 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 -5.058 -9.484 -6.773 1 24.7 ? C1 BOG 402 A 1 HETATM 2 O O1 BOG . . . C 3 -5.469 -8.457 -7.622 1 22.32 ? O1 BOG 402 A 1 HETATM 3 C C2 BOG . . . C 3 -5.902 -10.768 -6.867 1 24.09 ? C2 BOG 402 A 1 HETATM 4 O O2 BOG . . . C 3 -7.26 -10.449 -6.512 1 26.62 ? O2 BOG 402 A 1 HETATM 5 C C3 BOG . . . C 3 -5.35 -11.813 -5.918 1 24.78 ? C3 BOG 402 A 1 HETATM 6 O O3 BOG . . . C 3 -5.919 -13.093 -6.156 1 24.31 ? O3 BOG 402 A 1 HETATM 7 C C4 BOG . . . C 3 -3.908 -12.003 -6.266 1 23.29 ? C4 BOG 402 A 1 HETATM 8 O O4 BOG . . . C 3 -3.429 -12.922 -5.353 1 23.79 ? O4 BOG 402 A 1 HETATM 9 C C5 BOG . . . C 3 -3.145 -10.72 -6.172 1 24.23 ? C5 BOG 402 A 1 HETATM 10 O O5 BOG . . . C 3 -3.702 -9.818 -7.127 1 23.96 ? O5 BOG 402 A 1 HETATM 11 C C6 BOG . . . C 3 -1.768 -11.022 -6.746 1 24.68 ? C6 BOG 402 A 1 HETATM 12 O O6 BOG . . . C 3 -0.961 -9.957 -6.32 1 25.84 ? O6 BOG 402 A 1 HETATM 13 C C1' BOG . . . C 3 -4.994 -7.242 -7.091 1 24.95 ? C1' BOG 402 A 1 HETATM 14 C C2' BOG . . . C 3 -6.191 -6.407 -6.655 1 24.16 ? C2' BOG 402 A 1 HETATM 15 C C3' BOG . . . C 3 -5.686 -5.097 -6.186 1 28.39 ? C3' BOG 402 A 1 HETATM 16 C C4' BOG . . . C 3 -6.835 -4.299 -5.67 1 34.22 ? C4' BOG 402 A 1 HETATM 17 C C5' BOG . . . C 3 -6.251 -3.023 -5.112 1 39.84 ? C5' BOG 402 A 1 HETATM 18 C C6' BOG . . . C 3 -7.264 -1.894 -5.332 1 45.36 ? C6' BOG 402 A 1 HETATM 19 C C7' BOG . . . C 3 -7.066 -0.735 -4.34 1 44.75 ? C7' BOG 402 A 1 HETATM 20 C C8' BOG . . . C 3 -6.709 0.586 -5.044 1 45.06 ? C8' BOG 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #