data_5TD5
#
_model_server_result.job_id            7ItG4n9D59TryMO3PWnv5Q 
_model_server_result.datetime_utc      '2024-11-04 20:50:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5td5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":412}' 
#
_entry.id    5TD5 
#
_exptl.entry_id    5TD5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5TD5 
_cell.length_a            96.411 
_cell.length_b            96.411 
_cell.length_c            84.875 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TD5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 57 A HIS 253 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 A SG CYS 88 A CYS 284 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc3 A SG CYS 93 A CYS 289 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 193 n n 
C1 C2 EDO sing 194 n n 
C1 H11 EDO sing 195 n n 
C1 H12 EDO sing 196 n n 
O1 HO1 EDO sing 197 n n 
C2 O2 EDO sing 198 n n 
C2 H21 EDO sing 199 n n 
C2 H22 EDO sing 200 n n 
O2 HO2 EDO sing 201 n n 
#
_atom_sites.entry_id                     5TD5 
_atom_sites.fract_transf_matrix[1][1]    0.010372 
_atom_sites.fract_transf_matrix[1][2]    0.005988 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011977 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 400 ZN ZN . 
D 4 IOD A 1 402 1 IOD IOD . 
E 4 IOD A 1 403 2 IOD IOD . 
F 4 IOD A 1 404 4 IOD IOD . 
G 4 IOD A 1 405 5 IOD IOD . 
H 4 IOD A 1 406 8 IOD IOD . 
I 4 IOD A 1 407 10 IOD IOD . 
J 4 IOD A 1 408 12 IOD IOD . 
K 4 IOD A 1 409 15 IOD IOD . 
L 5 EDO A 1 410 1 EDO EDO . 
M 5 EDO A 1 411 2 EDO EDO . 
N 5 EDO A 1 412 3 EDO EDO . 
O 5 EDO A 1 413 4 EDO EDO . 
P 5 EDO A 1 414 5 EDO EDO . 
Q 5 EDO A 1 415 6 EDO EDO . 
R 6 CL A 1 416 1 CL CL . 
S 6 CL A 1 417 2 CL CL . 
T 4 IOD C 1 101 11 IOD IOD . 
U 7 HOH A 1 501 120 HOH HOH . 
U 7 HOH A 2 502 133 HOH HOH . 
U 7 HOH A 3 503 108 HOH HOH . 
U 7 HOH A 4 504 135 HOH HOH . 
U 7 HOH A 5 505 98 HOH HOH . 
U 7 HOH A 6 506 117 HOH HOH . 
U 7 HOH A 7 507 138 HOH HOH . 
U 7 HOH A 8 508 101 HOH HOH . 
U 7 HOH A 9 509 48 HOH HOH . 
U 7 HOH A 10 510 81 HOH HOH . 
U 7 HOH A 11 511 33 HOH HOH . 
U 7 HOH A 12 512 127 HOH HOH . 
U 7 HOH A 13 513 116 HOH HOH . 
U 7 HOH A 14 514 22 HOH HOH . 
U 7 HOH A 15 515 84 HOH HOH . 
U 7 HOH A 16 516 82 HOH HOH . 
U 7 HOH A 17 517 90 HOH HOH . 
U 7 HOH A 18 518 63 HOH HOH . 
U 7 HOH A 19 519 25 HOH HOH . 
U 7 HOH A 20 520 62 HOH HOH . 
U 7 HOH A 21 521 57 HOH HOH . 
U 7 HOH A 22 522 73 HOH HOH . 
U 7 HOH A 23 523 17 HOH HOH . 
U 7 HOH A 24 524 111 HOH HOH . 
U 7 HOH A 25 525 105 HOH HOH . 
U 7 HOH A 26 526 7 HOH HOH . 
U 7 HOH A 27 527 24 HOH HOH . 
U 7 HOH A 28 528 8 HOH HOH . 
U 7 HOH A 29 529 92 HOH HOH . 
U 7 HOH A 30 530 42 HOH HOH . 
U 7 HOH A 31 531 49 HOH HOH . 
U 7 HOH A 32 532 93 HOH HOH . 
U 7 HOH A 33 533 65 HOH HOH . 
U 7 HOH A 34 534 110 HOH HOH . 
U 7 HOH A 35 535 79 HOH HOH . 
U 7 HOH A 36 536 9 HOH HOH . 
U 7 HOH A 37 537 53 HOH HOH . 
U 7 HOH A 38 538 21 HOH HOH . 
U 7 HOH A 39 539 11 HOH HOH . 
U 7 HOH A 40 540 118 HOH HOH . 
U 7 HOH A 41 541 119 HOH HOH . 
U 7 HOH A 42 542 4 HOH HOH . 
U 7 HOH A 43 543 91 HOH HOH . 
U 7 HOH A 44 544 20 HOH HOH . 
U 7 HOH A 45 545 35 HOH HOH . 
U 7 HOH A 46 546 96 HOH HOH . 
U 7 HOH A 47 547 16 HOH HOH . 
U 7 HOH A 48 548 54 HOH HOH . 
U 7 HOH A 49 549 18 HOH HOH . 
U 7 HOH A 50 550 107 HOH HOH . 
U 7 HOH A 51 551 10 HOH HOH . 
U 7 HOH A 52 552 83 HOH HOH . 
U 7 HOH A 53 553 122 HOH HOH . 
U 7 HOH A 54 554 99 HOH HOH . 
U 7 HOH A 55 555 14 HOH HOH . 
U 7 HOH A 56 556 64 HOH HOH . 
U 7 HOH A 57 557 26 HOH HOH . 
U 7 HOH A 58 558 51 HOH HOH . 
U 7 HOH A 59 559 132 HOH HOH . 
U 7 HOH A 60 560 76 HOH HOH . 
U 7 HOH A 61 561 74 HOH HOH . 
U 7 HOH A 62 562 114 HOH HOH . 
U 7 HOH A 63 563 27 HOH HOH . 
U 7 HOH A 64 564 106 HOH HOH . 
U 7 HOH A 65 565 13 HOH HOH . 
U 7 HOH A 66 566 23 HOH HOH . 
U 7 HOH A 67 567 112 HOH HOH . 
U 7 HOH A 68 568 78 HOH HOH . 
U 7 HOH A 69 569 31 HOH HOH . 
U 7 HOH A 70 570 12 HOH HOH . 
U 7 HOH A 71 571 130 HOH HOH . 
U 7 HOH A 72 572 100 HOH HOH . 
U 7 HOH A 73 573 137 HOH HOH . 
U 7 HOH A 74 574 30 HOH HOH . 
U 7 HOH A 75 575 95 HOH HOH . 
U 7 HOH A 76 576 121 HOH HOH . 
U 7 HOH A 77 577 97 HOH HOH . 
U 7 HOH A 78 578 37 HOH HOH . 
U 7 HOH A 79 579 56 HOH HOH . 
U 7 HOH A 80 580 58 HOH HOH . 
U 7 HOH A 81 581 85 HOH HOH . 
U 7 HOH A 82 582 44 HOH HOH . 
U 7 HOH A 83 583 129 HOH HOH . 
U 7 HOH A 84 584 128 HOH HOH . 
U 7 HOH A 85 585 103 HOH HOH . 
U 7 HOH A 86 586 29 HOH HOH . 
U 7 HOH A 87 587 104 HOH HOH . 
U 7 HOH A 88 588 139 HOH HOH . 
U 7 HOH A 89 589 115 HOH HOH . 
U 7 HOH A 90 590 109 HOH HOH . 
U 7 HOH A 91 591 102 HOH HOH . 
V 7 HOH C 1 201 126 HOH HOH . 
V 7 HOH C 2 202 39 HOH HOH . 
V 7 HOH C 3 203 2 HOH HOH . 
V 7 HOH C 4 204 113 HOH HOH . 
V 7 HOH C 5 205 123 HOH HOH . 
V 7 HOH C 6 206 124 HOH HOH . 
V 7 HOH C 7 207 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 5 13.108 24.794 0.911 1 58.03 ? C1 EDO 412 A 1 
HETATM 2 O O1 EDO . . . N 5 11.723 24.821 0.546 1 44.85 ? O1 EDO 412 A 1 
HETATM 3 C C2 EDO . . . N 5 13.779 26.104 0.517 1 62.23 ? C2 EDO 412 A 1 
HETATM 4 O O2 EDO . . . N 5 13.691 27.034 1.604 1 73.55 ? O2 EDO 412 A 1 
HETATM 5 H H11 EDO . . . N 5 13.201 24.644 1.989 1 69.64 ? H11 EDO 412 A 1 
HETATM 6 H H12 EDO . . . N 5 13.604 23.962 0.408 1 69.64 ? H12 EDO 412 A 1 
HETATM 7 H HO1 EDO . . . N 5 11.307 23.986 0.8 1 53.82 ? HO1 EDO 412 A 1 
HETATM 8 H H21 EDO . . . N 5 14.827 25.922 0.271 1 74.68 ? H21 EDO 412 A 1 
HETATM 9 H H22 EDO . . . N 5 13.288 26.519 -0.365 1 74.68 ? H22 EDO 412 A 1 
HETATM 10 H HO2 EDO . . . N 5 14.117 27.865 1.352 1 88.26 ? HO2 EDO 412 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#