data_5TD7 # _model_server_result.job_id 7DPriDrZ5ShRnV0pOnqrgw _model_server_result.datetime_utc '2024-11-08 04:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5td7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":712}' # _entry.id 5TD7 # _exptl.entry_id 5TD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TD7 _cell.length_a 80.449 _cell.length_b 80.449 _cell.length_c 243.037 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 174 A ASP 172 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc2 A OD2 ASP 174 A ASP 172 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc3 A OD1 ASP 176 A ASP 174 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 A OD2 ASP 176 A ASP 174 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 A O ASP 176 A ASP 174 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc6 A ND1 HIS 178 A HIS 176 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 A O HIS 178 A HIS 176 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc8 A O PHE 187 A PHE 185 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc9 A O ASP 190 A ASP 188 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc10 A O VAL 193 A VAL 191 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc11 A OG SER 197 A SER 195 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc12 A O TRP 198 A TRP 196 1_555 C K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc13 A O PHE 226 A PHE 224 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc14 A OD2 ASP 269 A ASP 267 1_555 B ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc15 B ZN ZN . A ZN 701 1_555 L O13 FKS . A FKS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc16 B ZN ZN . A ZN 701 1_555 L O14 FKS . A FKS 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc17 D K K . A K 703 1_555 N O HOH . A HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5TD7 _atom_sites.fract_transf_matrix[1][1] 0.01243 _atom_sites.fract_transf_matrix[1][2] 0.007177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 701 1 ZN ZN . C 3 K A 1 702 1 K K . D 3 K A 1 703 2 K K . E 4 PO4 A 1 704 1 PO4 PO4 . F 4 PO4 A 1 705 3 PO4 PO4 . G 4 PO4 A 1 706 4 PO4 PO4 . H 4 PO4 A 1 707 5 PO4 PO4 . I 4 PO4 A 1 708 6 PO4 PO4 . J 4 PO4 A 1 709 7 PO4 PO4 . K 4 PO4 A 1 710 8 PO4 PO4 . L 5 FKS A 1 711 1 FKS FKS . M 6 1PE A 1 712 1 1PE 1PE . N 7 HOH A 1 801 4 HOH HOH . N 7 HOH A 2 802 47 HOH HOH . N 7 HOH A 3 803 23 HOH HOH . N 7 HOH A 4 804 21 HOH HOH . N 7 HOH A 5 805 34 HOH HOH . N 7 HOH A 6 806 20 HOH HOH . N 7 HOH A 7 807 27 HOH HOH . N 7 HOH A 8 808 19 HOH HOH . N 7 HOH A 9 809 18 HOH HOH . N 7 HOH A 10 810 48 HOH HOH . N 7 HOH A 11 811 6 HOH HOH . N 7 HOH A 12 812 1 HOH HOH . N 7 HOH A 13 813 17 HOH HOH . N 7 HOH A 14 814 42 HOH HOH . N 7 HOH A 15 815 8 HOH HOH . N 7 HOH A 16 816 39 HOH HOH . N 7 HOH A 17 817 10 HOH HOH . N 7 HOH A 18 818 44 HOH HOH . N 7 HOH A 19 819 2 HOH HOH . N 7 HOH A 20 820 40 HOH HOH . N 7 HOH A 21 821 38 HOH HOH . N 7 HOH A 22 822 30 HOH HOH . N 7 HOH A 23 823 3 HOH HOH . N 7 HOH A 24 824 22 HOH HOH . N 7 HOH A 25 825 32 HOH HOH . N 7 HOH A 26 826 25 HOH HOH . N 7 HOH A 27 827 14 HOH HOH . N 7 HOH A 28 828 28 HOH HOH . N 7 HOH A 29 829 12 HOH HOH . N 7 HOH A 30 830 41 HOH HOH . N 7 HOH A 31 831 46 HOH HOH . N 7 HOH A 32 832 33 HOH HOH . N 7 HOH A 33 833 13 HOH HOH . N 7 HOH A 34 834 15 HOH HOH . N 7 HOH A 35 835 31 HOH HOH . N 7 HOH A 36 836 24 HOH HOH . N 7 HOH A 37 837 37 HOH HOH . N 7 HOH A 38 838 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . M 6 16.948 3.279 80.12 0.65 56.35 ? OH2 1PE 712 A 1 HETATM 2 C C12 1PE . . . M 6 17.603 2.727 81.242 0.65 91.05 ? C12 1PE 712 A 1 HETATM 3 C C22 1PE . . . M 6 18.651 1.726 80.691 0.65 95.48 ? C22 1PE 712 A 1 HETATM 4 O OH3 1PE . . . M 6 19.698 1.591 81.652 0.65 99.52 ? OH3 1PE 712 A 1 HETATM 5 C C13 1PE . . . M 6 22.094 1.754 81.92 0.65 98.74 ? C13 1PE 712 A 1 HETATM 6 C C23 1PE . . . M 6 20.824 2.383 81.307 0.65 95.7 ? C23 1PE 712 A 1 HETATM 7 O OH4 1PE . . . M 6 22.834 1.135 80.89 0.65 105.01 ? OH4 1PE 712 A 1 HETATM 8 C C14 1PE . . . M 6 23.725 -1.021 80.321 0.65 106.68 ? C14 1PE 712 A 1 HETATM 9 C C24 1PE . . . M 6 23.654 0.093 81.38 0.65 107.42 ? C24 1PE 712 A 1 HETATM 10 O OH5 1PE . . . M 6 22.442 -1.226 79.771 0.65 99.73 ? OH5 1PE 712 A 1 HETATM 11 C C15 1PE . . . M 6 20.656 -1.988 81.2 0.65 95.61 ? C15 1PE 712 A 1 HETATM 12 C C25 1PE . . . M 6 21.838 -2.383 80.303 0.65 97.53 ? C25 1PE 712 A 1 HETATM 13 O OH6 1PE . . . M 6 19.518 -1.87 80.383 0.65 99.44 ? OH6 1PE 712 A 1 HETATM 14 C C16 1PE . . . M 6 17.242 -2.447 80.184 0.65 89.33 ? C16 1PE 712 A 1 HETATM 15 C C26 1PE . . . M 6 18.324 -1.923 81.134 0.65 95.74 ? C26 1PE 712 A 1 HETATM 16 O OH7 1PE . . . M 6 16.996 -1.42 79.258 0.65 65.59 ? OH7 1PE 712 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #