data_5TDW # _model_server_result.job_id vK0QDUBcgHVLS1AYm6ombQ _model_server_result.datetime_utc '2024-12-26 13:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 5TDW # _exptl.entry_id 5TDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TDW _cell.length_a 25.87 _cell.length_b 43.68 _cell.length_c 85.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 5 A CYS 5 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc2 A SG CYS 7 A CYS 7 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A SG CYS 19 A CYS 19 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 22 A CYS 22 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 A ND1 HIS 27 A HIS 27 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc6 A SG CYS 30 A CYS 30 1_555 C ZN ZN . A ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 A O LEU 44 A LEU 44 1_555 E NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc8 A O CYS 45 A CYS 45 1_555 E NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc9 A SG CYS 45 A CYS 45 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc10 A SG CYS 48 A CYS 48 1_555 D ZN ZN . A ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 A O ASP 49 A ASP 49 1_555 E NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? covale ? covale1 B C THR 3 B THR 3 1_555 B N M3L 4 B M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C M3L 4 B M3L 4 1_555 B N GLN 5 B GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc12 E NA NA . A NA 103 1_555 F O HOH . A HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TDW _atom_sites.fract_transf_matrix[1][1] 0.038655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 101 3 ZN ZN . D 3 ZN A 1 102 4 ZN ZN . E 4 NA A 1 103 1 NA NA . F 5 HOH A 1 201 118 HOH HOH . F 5 HOH A 2 202 111 HOH HOH . F 5 HOH A 3 203 112 HOH HOH . F 5 HOH A 4 204 149 HOH HOH . F 5 HOH A 5 205 110 HOH HOH . F 5 HOH A 6 206 20 HOH HOH . F 5 HOH A 7 207 128 HOH HOH . F 5 HOH A 8 208 129 HOH HOH . F 5 HOH A 9 209 75 HOH HOH . F 5 HOH A 10 210 36 HOH HOH . F 5 HOH A 11 211 86 HOH HOH . F 5 HOH A 12 212 80 HOH HOH . F 5 HOH A 13 213 35 HOH HOH . F 5 HOH A 14 214 83 HOH HOH . F 5 HOH A 15 215 2 HOH HOH . F 5 HOH A 16 216 79 HOH HOH . F 5 HOH A 17 217 8 HOH HOH . F 5 HOH A 18 218 9 HOH HOH . F 5 HOH A 19 219 27 HOH HOH . F 5 HOH A 20 220 164 HOH HOH . F 5 HOH A 21 221 115 HOH HOH . F 5 HOH A 22 222 21 HOH HOH . F 5 HOH A 23 223 155 HOH HOH . F 5 HOH A 24 224 196 HOH HOH . F 5 HOH A 25 225 54 HOH HOH . F 5 HOH A 26 226 34 HOH HOH . F 5 HOH A 27 227 78 HOH HOH . F 5 HOH A 28 228 175 HOH HOH . F 5 HOH A 29 229 178 HOH HOH . F 5 HOH A 30 230 6 HOH HOH . F 5 HOH A 31 231 105 HOH HOH . F 5 HOH A 32 232 3 HOH HOH . F 5 HOH A 33 233 47 HOH HOH . F 5 HOH A 34 234 19 HOH HOH . F 5 HOH A 35 235 102 HOH HOH . F 5 HOH A 36 236 141 HOH HOH . F 5 HOH A 37 237 44 HOH HOH . F 5 HOH A 38 238 185 HOH HOH . F 5 HOH A 39 239 10 HOH HOH . F 5 HOH A 40 240 26 HOH HOH . F 5 HOH A 41 241 57 HOH HOH . F 5 HOH A 42 242 100 HOH HOH . F 5 HOH A 43 243 28 HOH HOH . F 5 HOH A 44 244 11 HOH HOH . F 5 HOH A 45 245 162 HOH HOH . F 5 HOH A 46 246 15 HOH HOH . F 5 HOH A 47 247 121 HOH HOH . F 5 HOH A 48 248 59 HOH HOH . F 5 HOH A 49 249 1 HOH HOH . F 5 HOH A 50 250 53 HOH HOH . F 5 HOH A 51 251 17 HOH HOH . F 5 HOH A 52 252 152 HOH HOH . F 5 HOH A 53 253 99 HOH HOH . F 5 HOH A 54 254 58 HOH HOH . F 5 HOH A 55 255 14 HOH HOH . F 5 HOH A 56 256 48 HOH HOH . F 5 HOH A 57 257 123 HOH HOH . F 5 HOH A 58 258 135 HOH HOH . F 5 HOH A 59 259 146 HOH HOH . F 5 HOH A 60 260 33 HOH HOH . F 5 HOH A 61 261 49 HOH HOH . F 5 HOH A 62 262 39 HOH HOH . F 5 HOH A 63 263 68 HOH HOH . F 5 HOH A 64 264 29 HOH HOH . F 5 HOH A 65 265 4 HOH HOH . F 5 HOH A 66 266 22 HOH HOH . F 5 HOH A 67 267 13 HOH HOH . F 5 HOH A 68 268 177 HOH HOH . F 5 HOH A 69 269 76 HOH HOH . F 5 HOH A 70 270 67 HOH HOH . F 5 HOH A 71 271 134 HOH HOH . F 5 HOH A 72 272 32 HOH HOH . F 5 HOH A 73 273 161 HOH HOH . F 5 HOH A 74 274 40 HOH HOH . F 5 HOH A 75 275 89 HOH HOH . F 5 HOH A 76 276 126 HOH HOH . F 5 HOH A 77 277 148 HOH HOH . F 5 HOH A 78 278 51 HOH HOH . F 5 HOH A 79 279 127 HOH HOH . F 5 HOH A 80 280 62 HOH HOH . F 5 HOH A 81 281 25 HOH HOH . F 5 HOH A 82 282 124 HOH HOH . F 5 HOH A 83 283 45 HOH HOH . F 5 HOH A 84 284 120 HOH HOH . F 5 HOH A 85 285 197 HOH HOH . F 5 HOH A 86 286 156 HOH HOH . F 5 HOH A 87 287 101 HOH HOH . F 5 HOH A 88 288 31 HOH HOH . F 5 HOH A 89 289 70 HOH HOH . F 5 HOH A 90 290 46 HOH HOH . F 5 HOH A 91 291 88 HOH HOH . F 5 HOH A 92 292 125 HOH HOH . F 5 HOH A 93 293 87 HOH HOH . F 5 HOH A 94 294 65 HOH HOH . F 5 HOH A 95 295 172 HOH HOH . F 5 HOH A 96 296 142 HOH HOH . F 5 HOH A 97 297 153 HOH HOH . F 5 HOH A 98 298 52 HOH HOH . F 5 HOH A 99 299 180 HOH HOH . F 5 HOH A 100 300 139 HOH HOH . F 5 HOH A 101 301 5 HOH HOH . F 5 HOH A 102 302 64 HOH HOH . F 5 HOH A 103 303 193 HOH HOH . F 5 HOH A 104 304 138 HOH HOH . F 5 HOH A 105 305 158 HOH HOH . F 5 HOH A 106 306 116 HOH HOH . F 5 HOH A 107 307 38 HOH HOH . F 5 HOH A 108 308 130 HOH HOH . F 5 HOH A 109 309 106 HOH HOH . F 5 HOH A 110 310 151 HOH HOH . F 5 HOH A 111 311 77 HOH HOH . F 5 HOH A 112 312 66 HOH HOH . F 5 HOH A 113 313 191 HOH HOH . F 5 HOH A 114 314 61 HOH HOH . F 5 HOH A 115 315 104 HOH HOH . F 5 HOH A 116 316 181 HOH HOH . F 5 HOH A 117 317 98 HOH HOH . F 5 HOH A 118 318 92 HOH HOH . F 5 HOH A 119 319 73 HOH HOH . F 5 HOH A 120 320 195 HOH HOH . F 5 HOH A 121 321 71 HOH HOH . F 5 HOH A 122 322 37 HOH HOH . F 5 HOH A 123 323 82 HOH HOH . F 5 HOH A 124 324 43 HOH HOH . F 5 HOH A 125 325 50 HOH HOH . F 5 HOH A 126 326 107 HOH HOH . F 5 HOH A 127 327 69 HOH HOH . F 5 HOH A 128 328 144 HOH HOH . F 5 HOH A 129 329 192 HOH HOH . F 5 HOH A 130 330 163 HOH HOH . F 5 HOH A 131 331 24 HOH HOH . F 5 HOH A 132 332 117 HOH HOH . F 5 HOH A 133 333 154 HOH HOH . F 5 HOH A 134 334 60 HOH HOH . F 5 HOH A 135 335 113 HOH HOH . F 5 HOH A 136 336 157 HOH HOH . F 5 HOH A 137 337 201 HOH HOH . F 5 HOH A 138 338 90 HOH HOH . F 5 HOH A 139 339 173 HOH HOH . F 5 HOH A 140 340 160 HOH HOH . F 5 HOH A 141 341 91 HOH HOH . F 5 HOH A 142 342 94 HOH HOH . F 5 HOH A 143 343 23 HOH HOH . F 5 HOH A 144 344 190 HOH HOH . F 5 HOH A 145 345 132 HOH HOH . F 5 HOH A 146 346 145 HOH HOH . F 5 HOH A 147 347 72 HOH HOH . F 5 HOH A 148 348 41 HOH HOH . F 5 HOH A 149 349 119 HOH HOH . F 5 HOH A 150 350 18 HOH HOH . F 5 HOH A 151 351 167 HOH HOH . F 5 HOH A 152 352 165 HOH HOH . F 5 HOH A 153 353 16 HOH HOH . F 5 HOH A 154 354 136 HOH HOH . F 5 HOH A 155 355 205 HOH HOH . F 5 HOH A 156 356 143 HOH HOH . F 5 HOH A 157 357 176 HOH HOH . F 5 HOH A 158 358 63 HOH HOH . F 5 HOH A 159 359 188 HOH HOH . F 5 HOH A 160 360 186 HOH HOH . F 5 HOH A 161 361 97 HOH HOH . F 5 HOH A 162 362 150 HOH HOH . F 5 HOH A 163 363 187 HOH HOH . F 5 HOH A 164 364 174 HOH HOH . F 5 HOH A 165 365 166 HOH HOH . F 5 HOH A 166 366 169 HOH HOH . F 5 HOH A 167 367 74 HOH HOH . F 5 HOH A 168 368 30 HOH HOH . F 5 HOH A 169 369 198 HOH HOH . F 5 HOH A 170 370 108 HOH HOH . F 5 HOH A 171 371 81 HOH HOH . F 5 HOH A 172 372 189 HOH HOH . F 5 HOH A 173 373 199 HOH HOH . F 5 HOH A 174 374 42 HOH HOH . F 5 HOH A 175 375 95 HOH HOH . F 5 HOH A 176 376 109 HOH HOH . F 5 HOH A 177 377 96 HOH HOH . F 5 HOH A 178 378 170 HOH HOH . F 5 HOH A 179 379 122 HOH HOH . F 5 HOH A 180 380 182 HOH HOH . F 5 HOH A 181 381 204 HOH HOH . F 5 HOH A 182 382 203 HOH HOH . F 5 HOH A 183 383 159 HOH HOH . F 5 HOH A 184 384 200 HOH HOH . G 5 HOH B 1 101 184 HOH HOH . G 5 HOH B 2 102 55 HOH HOH . G 5 HOH B 3 103 12 HOH HOH . G 5 HOH B 4 104 183 HOH HOH . G 5 HOH B 5 105 137 HOH HOH . G 5 HOH B 6 106 7 HOH HOH . G 5 HOH B 7 107 131 HOH HOH . G 5 HOH B 8 108 168 HOH HOH . G 5 HOH B 9 109 84 HOH HOH . G 5 HOH B 10 110 93 HOH HOH . G 5 HOH B 11 111 114 HOH HOH . G 5 HOH B 12 112 133 HOH HOH . G 5 HOH B 13 113 147 HOH HOH . G 5 HOH B 14 114 179 HOH HOH . G 5 HOH B 15 115 85 HOH HOH . G 5 HOH B 16 116 103 HOH HOH . G 5 HOH B 17 117 56 HOH HOH . G 5 HOH B 18 118 140 HOH HOH . G 5 HOH B 19 119 171 HOH HOH . G 5 HOH B 20 120 202 HOH HOH . G 5 HOH B 21 121 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 7.171 _atom_site.Cartn_y 19.074 _atom_site.Cartn_z 99.286 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #