data_5TE8 # _model_server_result.job_id qnPmsfg-Vo_Jv4F4S3hVVA _model_server_result.datetime_utc '2024-11-24 06:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5te8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 5TE8 # _exptl.entry_id 5TE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TE8 _cell.length_a 64.289 _cell.length_b 117.98 _cell.length_c 205.649 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 1 2 C,H,I,L 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_544 -x,y-1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 -58.99 -102.8245 3 'crystal symmetry operation' 3_554 -x,y+1/2,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 58.99 -102.8245 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 D FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc2 B SG CYS 422 B CYS 442 1_555 F FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 C SG CYS 422 C CYS 442 1_555 H FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 168 n n CHA C4D HEM doub 169 n n CHA HHA HEM sing 170 n n CHB C4A HEM sing 171 n n CHB C1B HEM doub 172 n n CHB HHB HEM sing 173 n n CHC C4B HEM sing 174 n n CHC C1C HEM doub 175 n n CHC HHC HEM sing 176 n n CHD C4C HEM doub 177 n n CHD C1D HEM sing 178 n n CHD HHD HEM sing 179 n n C1A C2A HEM doub 180 n y C1A NA HEM sing 181 n y C2A C3A HEM sing 182 n y C2A CAA HEM sing 183 n n C3A C4A HEM doub 184 n y C3A CMA HEM sing 185 n n C4A NA HEM sing 186 n y CMA HMA HEM sing 187 n n CMA HMAA HEM sing 188 n n CMA HMAB HEM sing 189 n n CAA CBA HEM sing 190 n n CAA HAA HEM sing 191 n n CAA HAAA HEM sing 192 n n CBA CGA HEM sing 193 n n CBA HBA HEM sing 194 n n CBA HBAA HEM sing 195 n n CGA O1A HEM doub 196 n n CGA O2A HEM sing 197 n n C1B C2B HEM sing 198 n n C1B NB HEM sing 199 n n C2B C3B HEM doub 200 n n C2B CMB HEM sing 201 n n C3B C4B HEM sing 202 n n C3B CAB HEM sing 203 n n C4B NB HEM doub 204 n n CMB HMB HEM sing 205 n n CMB HMBA HEM sing 206 n n CMB HMBB HEM sing 207 n n CAB CBB HEM doub 208 n n CAB HAB HEM sing 209 n n CBB HBB HEM sing 210 n n CBB HBBA HEM sing 211 n n C1C C2C HEM sing 212 n y C1C NC HEM sing 213 n y C2C C3C HEM doub 214 n y C2C CMC HEM sing 215 n n C3C C4C HEM sing 216 n y C3C CAC HEM sing 217 n n C4C NC HEM sing 218 n y CMC HMC HEM sing 219 n n CMC HMCA HEM sing 220 n n CMC HMCB HEM sing 221 n n CAC CBC HEM doub 222 n n CAC HAC HEM sing 223 n n CBC HBC HEM sing 224 n n CBC HBCA HEM sing 225 n n C1D C2D HEM sing 226 n n C1D ND HEM doub 227 n n C2D C3D HEM doub 228 n n C2D CMD HEM sing 229 n n C3D C4D HEM sing 230 n n C3D CAD HEM sing 231 n n C4D ND HEM sing 232 n n CMD HMD HEM sing 233 n n CMD HMDA HEM sing 234 n n CMD HMDB HEM sing 235 n n CAD CBD HEM sing 236 n n CAD HAD HEM sing 237 n n CAD HADA HEM sing 238 n n CBD CGD HEM sing 239 n n CBD HBD HEM sing 240 n n CBD HBDA HEM sing 241 n n CGD O1D HEM doub 242 n n CGD O2D HEM sing 243 n n O2A H2A HEM sing 244 n n O2D H2D HEM sing 245 n n FE NA HEM sing 246 n n FE NB HEM sing 247 n n FE NC HEM sing 248 n n FE ND HEM sing 249 n n # _atom_sites.entry_id 5TE8 _atom_sites.fract_transf_matrix[1][1] 0.015555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HEM A 1 601 601 HEM HEM . E 3 08J A 1 602 602 08J 08J . F 2 HEM B 1 601 601 HEM HEM . G 3 08J B 1 602 602 08J 08J . H 2 HEM C 1 601 601 HEM HEM . I 3 08J C 1 602 602 08J 08J . J 4 HOH A 1 701 99 HOH HOH . J 4 HOH A 2 702 48 HOH HOH . J 4 HOH A 3 703 83 HOH HOH . J 4 HOH A 4 704 63 HOH HOH . J 4 HOH A 5 705 51 HOH HOH . J 4 HOH A 6 706 53 HOH HOH . J 4 HOH A 7 707 10 HOH HOH . J 4 HOH A 8 708 41 HOH HOH . J 4 HOH A 9 709 21 HOH HOH . J 4 HOH A 10 710 4 HOH HOH . J 4 HOH A 11 711 102 HOH HOH . J 4 HOH A 12 712 76 HOH HOH . J 4 HOH A 13 713 31 HOH HOH . J 4 HOH A 14 714 69 HOH HOH . J 4 HOH A 15 715 97 HOH HOH . J 4 HOH A 16 716 5 HOH HOH . J 4 HOH A 17 717 58 HOH HOH . J 4 HOH A 18 718 19 HOH HOH . J 4 HOH A 19 719 46 HOH HOH . J 4 HOH A 20 720 59 HOH HOH . J 4 HOH A 21 721 8 HOH HOH . J 4 HOH A 22 722 44 HOH HOH . J 4 HOH A 23 723 81 HOH HOH . J 4 HOH A 24 724 61 HOH HOH . J 4 HOH A 25 725 62 HOH HOH . J 4 HOH A 26 726 18 HOH HOH . J 4 HOH A 27 727 50 HOH HOH . J 4 HOH A 28 728 74 HOH HOH . J 4 HOH A 29 729 60 HOH HOH . J 4 HOH A 30 730 25 HOH HOH . J 4 HOH A 31 731 93 HOH HOH . J 4 HOH A 32 732 14 HOH HOH . J 4 HOH A 33 733 49 HOH HOH . J 4 HOH A 34 734 39 HOH HOH . J 4 HOH A 35 735 12 HOH HOH . J 4 HOH A 36 736 7 HOH HOH . J 4 HOH A 37 737 86 HOH HOH . J 4 HOH A 38 738 106 HOH HOH . J 4 HOH A 39 739 67 HOH HOH . J 4 HOH A 40 740 84 HOH HOH . J 4 HOH A 41 741 57 HOH HOH . J 4 HOH A 42 742 6 HOH HOH . J 4 HOH A 43 743 98 HOH HOH . J 4 HOH A 44 744 24 HOH HOH . J 4 HOH A 45 745 23 HOH HOH . J 4 HOH A 46 746 47 HOH HOH . J 4 HOH A 47 747 92 HOH HOH . J 4 HOH A 48 748 43 HOH HOH . J 4 HOH A 49 749 77 HOH HOH . J 4 HOH A 50 750 37 HOH HOH . J 4 HOH A 51 751 94 HOH HOH . J 4 HOH A 52 752 79 HOH HOH . J 4 HOH A 53 753 29 HOH HOH . K 4 HOH B 1 701 1 HOH HOH . K 4 HOH B 2 702 11 HOH HOH . K 4 HOH B 3 703 90 HOH HOH . K 4 HOH B 4 704 2 HOH HOH . K 4 HOH B 5 705 107 HOH HOH . K 4 HOH B 6 706 15 HOH HOH . K 4 HOH B 7 707 30 HOH HOH . K 4 HOH B 8 708 80 HOH HOH . K 4 HOH B 9 709 104 HOH HOH . K 4 HOH B 10 710 13 HOH HOH . K 4 HOH B 11 711 42 HOH HOH . K 4 HOH B 12 712 33 HOH HOH . K 4 HOH B 13 713 17 HOH HOH . K 4 HOH B 14 714 36 HOH HOH . K 4 HOH B 15 715 38 HOH HOH . K 4 HOH B 16 716 3 HOH HOH . K 4 HOH B 17 717 75 HOH HOH . K 4 HOH B 18 718 100 HOH HOH . K 4 HOH B 19 719 28 HOH HOH . K 4 HOH B 20 720 22 HOH HOH . K 4 HOH B 21 721 16 HOH HOH . K 4 HOH B 22 722 32 HOH HOH . K 4 HOH B 23 723 65 HOH HOH . K 4 HOH B 24 724 26 HOH HOH . K 4 HOH B 25 725 55 HOH HOH . K 4 HOH B 26 726 35 HOH HOH . K 4 HOH B 27 727 66 HOH HOH . K 4 HOH B 28 728 34 HOH HOH . K 4 HOH B 29 729 40 HOH HOH . K 4 HOH B 30 730 109 HOH HOH . K 4 HOH B 31 731 91 HOH HOH . K 4 HOH B 32 732 89 HOH HOH . K 4 HOH B 33 733 45 HOH HOH . K 4 HOH B 34 734 70 HOH HOH . K 4 HOH B 35 735 72 HOH HOH . K 4 HOH B 36 736 82 HOH HOH . K 4 HOH B 37 737 71 HOH HOH . K 4 HOH B 38 738 68 HOH HOH . K 4 HOH B 39 739 52 HOH HOH . K 4 HOH B 40 740 105 HOH HOH . K 4 HOH B 41 741 101 HOH HOH . K 4 HOH B 42 742 96 HOH HOH . L 4 HOH C 1 701 64 HOH HOH . L 4 HOH C 2 702 54 HOH HOH . L 4 HOH C 3 703 87 HOH HOH . L 4 HOH C 4 704 56 HOH HOH . L 4 HOH C 5 705 27 HOH HOH . L 4 HOH C 6 706 9 HOH HOH . L 4 HOH C 7 707 88 HOH HOH . L 4 HOH C 8 708 95 HOH HOH . L 4 HOH C 9 709 103 HOH HOH . L 4 HOH C 10 710 110 HOH HOH . L 4 HOH C 11 711 108 HOH HOH . L 4 HOH C 12 712 111 HOH HOH . L 4 HOH C 13 713 78 HOH HOH . L 4 HOH C 14 714 73 HOH HOH . L 4 HOH C 15 715 20 HOH HOH . L 4 HOH C 16 716 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 16.973 -45.557 -14.74 1 58.82 ? CHA HEM 601 C 1 HETATM 2 C CHB HEM . . . H 2 13.327 -43.649 -12.266 1 64.44 ? CHB HEM 601 C 1 HETATM 3 C CHC HEM . . . H 2 13.919 -39.449 -14.672 1 63.44 ? CHC HEM 601 C 1 HETATM 4 C CHD HEM . . . H 2 18.028 -41.196 -16.503 1 61.62 ? CHD HEM 601 C 1 HETATM 5 C C1A HEM . . . H 2 15.934 -45.391 -13.865 1 60.56 ? C1A HEM 601 C 1 HETATM 6 C C2A HEM . . . H 2 15.392 -46.435 -13.085 1 60.99 ? C2A HEM 601 C 1 HETATM 7 C C3A HEM . . . H 2 14.352 -45.9 -12.383 1 62.72 ? C3A HEM 601 C 1 HETATM 8 C C4A HEM . . . H 2 14.261 -44.538 -12.729 1 62.86 ? C4A HEM 601 C 1 HETATM 9 C CMA HEM . . . H 2 13.448 -46.605 -11.393 1 64.51 ? CMA HEM 601 C 1 HETATM 10 C CAA HEM . . . H 2 15.886 -47.866 -13.051 1 59.79 ? CAA HEM 601 C 1 HETATM 11 C CBA HEM . . . H 2 16.591 -48.2 -11.734 1 62.44 ? CBA HEM 601 C 1 HETATM 12 C CGA HEM . . . H 2 17.152 -49.608 -11.715 1 63.31 ? CGA HEM 601 C 1 HETATM 13 O O1A HEM . . . H 2 18.071 -49.866 -10.904 1 64.22 ? O1A HEM 601 C 1 HETATM 14 O O2A HEM . . . H 2 16.729 -50.518 -12.484 1 61.41 ? O2A HEM 601 C 1 HETATM 15 C C1B HEM . . . H 2 13.169 -42.353 -12.79 1 65.8 ? C1B HEM 601 C 1 HETATM 16 C C2B HEM . . . H 2 12.077 -41.543 -12.386 1 67.55 ? C2B HEM 601 C 1 HETATM 17 C C3B HEM . . . H 2 12.208 -40.348 -13.049 1 67.17 ? C3B HEM 601 C 1 HETATM 18 C C4B HEM . . . H 2 13.433 -40.472 -13.875 1 64.51 ? C4B HEM 601 C 1 HETATM 19 C CMB HEM . . . H 2 11.012 -41.973 -11.397 1 67.65 ? CMB HEM 601 C 1 HETATM 20 C CAB HEM . . . H 2 11.349 -39.14 -12.982 1 70.45 ? CAB HEM 601 C 1 HETATM 21 C CBB HEM . . . H 2 10.172 -39.093 -12.357 1 70.85 ? CBB HEM 601 C 1 HETATM 22 C C1C HEM . . . H 2 15.152 -39.505 -15.296 1 62.96 ? C1C HEM 601 C 1 HETATM 23 C C2C HEM . . . H 2 15.833 -38.442 -15.924 1 63.36 ? C2C HEM 601 C 1 HETATM 24 C C3C HEM . . . H 2 17.013 -38.955 -16.447 1 63 ? C3C HEM 601 C 1 HETATM 25 C C4C HEM . . . H 2 17.037 -40.331 -16.115 1 62.48 ? C4C HEM 601 C 1 HETATM 26 C CMC HEM . . . H 2 15.352 -37.015 -15.995 1 64.59 ? CMC HEM 601 C 1 HETATM 27 C CAC HEM . . . H 2 18.087 -38.259 -17.182 1 64.83 ? CAC HEM 601 C 1 HETATM 28 C CBC HEM . . . H 2 17.819 -37.319 -18.09 1 67.83 ? CBC HEM 601 C 1 HETATM 29 C C1D HEM . . . H 2 18 -42.555 -16.225 1 59.92 ? C1D HEM 601 C 1 HETATM 30 C C2D HEM . . . H 2 19.006 -43.483 -16.76 1 59.65 ? C2D HEM 601 C 1 HETATM 31 C C3D HEM . . . H 2 18.714 -44.7 -16.257 1 58.92 ? C3D HEM 601 C 1 HETATM 32 C C4D HEM . . . H 2 17.529 -44.494 -15.421 1 58.68 ? C4D HEM 601 C 1 HETATM 33 C CMD HEM . . . H 2 20.141 -43.127 -17.689 1 59.74 ? CMD HEM 601 C 1 HETATM 34 C CAD HEM . . . H 2 19.435 -46.012 -16.497 1 58.84 ? CAD HEM 601 C 1 HETATM 35 C CBD HEM . . . H 2 20.95 -45.793 -16.602 1 60.95 ? CBD HEM 601 C 1 HETATM 36 C CGD HEM . . . H 2 21.773 -47.046 -16.405 1 61.28 ? CGD HEM 601 C 1 HETATM 37 O O1D HEM . . . H 2 22.937 -46.939 -15.964 1 62.13 ? O1D HEM 601 C 1 HETATM 38 O O2D HEM . . . H 2 21.322 -48.18 -16.688 1 61.17 ? O2D HEM 601 C 1 HETATM 39 N NA HEM . . . H 2 15.22 -44.235 -13.638 1 61.99 ? NA HEM 601 C 1 HETATM 40 N NB HEM . . . H 2 13.944 -41.676 -13.654 1 63.84 ? NB HEM 601 C 1 HETATM 41 N NC HEM . . . H 2 15.906 -40.625 -15.406 1 61.92 ? NC HEM 601 C 1 HETATM 42 N ND HEM . . . H 2 17.153 -43.199 -15.43 1 60.07 ? ND HEM 601 C 1 HETATM 43 FE FE HEM . . . H 2 15.651 -42.503 -14.534 1 63.87 ? FE HEM 601 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 743 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #