data_5TEI # _model_server_result.job_id 9JIlgwQgDOzm-szL_Egc4Q _model_server_result.datetime_utc '2024-11-15 14:42:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 5TEI # _exptl.entry_id 5TEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.412 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(3-fluorophenyl)methyl]sulfanyl}-5-(2-methylphenyl)-2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TEI _cell.length_a 108.818 _cell.length_b 108.818 _cell.length_c 82.954 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 108.818 0 0 3 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 108.818 0 82.954 4 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 82.954 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O2A NAI . A NAI 601 1_555 D YB YB . A YB 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc2 B O1N NAI . A NAI 601 1_555 D YB YB . A YB 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 C YB YB . A YB 602 1_555 G O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 C YB YB . A YB 602 1_555 G O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc5 C YB YB . A YB 602 1_555 G O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 C YB YB . A YB 602 1_555 G O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 C YB YB . A YB 602 1_555 G O HOH . A HOH 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 C YB YB . A YB 602 1_555 G O HOH . A HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 C YB YB . A YB 602 1_555 G O HOH . A HOH 849 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc10 C YB YB . A YB 602 1_555 G O HOH . A HOH 849 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 D YB YB . A YB 603 1_555 G O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc12 D YB YB . A YB 603 1_555 G O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc13 D YB YB . A YB 603 1_555 G O HOH . A HOH 739 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc14 D YB YB . A YB 603 1_555 G O HOH . A HOH 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C19 H15 F N4 O S' _chem_comp.formula_weight 366.412 _chem_comp.id M39 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(3-fluorophenyl)methyl]sulfanyl}-5-(2-methylphenyl)-2,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C17 M39 sing 218 n n C16 C17 M39 doub 219 n y C16 C15 M39 sing 220 n y C17 C18 M39 sing 221 n y C15 C14 M39 doub 222 n y C18 C13 M39 doub 223 n y C14 C13 M39 sing 224 n y C13 C12 M39 sing 225 n n C12 S11 M39 sing 226 n n N1 N5 M39 sing 227 n y N1 C2 M39 doub 228 n y N6 C2 M39 sing 229 n n N6 C7 M39 doub 230 n n N5 C4 M39 sing 231 n y C2 C3 M39 sing 232 n y S11 C7 M39 sing 233 n n C7 N8 M39 sing 234 n n C4 C3 M39 doub 235 n y C3 C9 M39 sing 236 n n N8 C9 M39 sing 237 n n N8 C19 M39 sing 238 n n C9 O10 M39 doub 239 n n C19 C20 M39 doub 240 n y C19 C24 M39 sing 241 n y C20 C21 M39 sing 242 n y C25 C24 M39 sing 243 n n C24 C23 M39 doub 244 n y C21 C22 M39 doub 245 n y C23 C22 M39 sing 246 n y C4 H1 M39 sing 247 n n N5 H2 M39 sing 248 n n C20 H3 M39 sing 249 n n C21 H4 M39 sing 250 n n C22 H5 M39 sing 251 n n C23 H6 M39 sing 252 n n C25 H7 M39 sing 253 n n C25 H8 M39 sing 254 n n C25 H9 M39 sing 255 n n C12 H10 M39 sing 256 n n C12 H11 M39 sing 257 n n C18 H12 M39 sing 258 n n C14 H13 M39 sing 259 n n C15 H14 M39 sing 260 n n C16 H15 M39 sing 261 n n # _atom_sites.entry_id 5TEI _atom_sites.fract_transf_matrix[1][1] 0.00919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 601 1 NAI NAI . C 3 YB A 1 602 1 YB YB . D 3 YB A 1 603 2 YB YB . E 4 M39 A 1 604 1 M39 M39 . F 5 CL A 1 605 1 CL CL . G 6 HOH A 1 701 9 HOH HOH . G 6 HOH A 2 702 129 HOH HOH . G 6 HOH A 3 703 11 HOH HOH . G 6 HOH A 4 704 16 HOH HOH . G 6 HOH A 5 705 125 HOH HOH . G 6 HOH A 6 706 26 HOH HOH . G 6 HOH A 7 707 66 HOH HOH . G 6 HOH A 8 708 118 HOH HOH . G 6 HOH A 9 709 107 HOH HOH . G 6 HOH A 10 710 45 HOH HOH . G 6 HOH A 11 711 136 HOH HOH . G 6 HOH A 12 712 50 HOH HOH . G 6 HOH A 13 713 58 HOH HOH . G 6 HOH A 14 714 137 HOH HOH . G 6 HOH A 15 715 112 HOH HOH . G 6 HOH A 16 716 71 HOH HOH . G 6 HOH A 17 717 70 HOH HOH . G 6 HOH A 18 718 1 HOH HOH . G 6 HOH A 19 719 117 HOH HOH . G 6 HOH A 20 720 89 HOH HOH . G 6 HOH A 21 721 95 HOH HOH . G 6 HOH A 22 722 6 HOH HOH . G 6 HOH A 23 723 75 HOH HOH . G 6 HOH A 24 724 19 HOH HOH . G 6 HOH A 25 725 85 HOH HOH . G 6 HOH A 26 726 138 HOH HOH . G 6 HOH A 27 727 69 HOH HOH . G 6 HOH A 28 728 105 HOH HOH . G 6 HOH A 29 729 149 HOH HOH . G 6 HOH A 30 730 116 HOH HOH . G 6 HOH A 31 731 56 HOH HOH . G 6 HOH A 32 732 78 HOH HOH . G 6 HOH A 33 733 86 HOH HOH . G 6 HOH A 34 734 44 HOH HOH . G 6 HOH A 35 735 37 HOH HOH . G 6 HOH A 36 736 12 HOH HOH . G 6 HOH A 37 737 103 HOH HOH . G 6 HOH A 38 738 123 HOH HOH . G 6 HOH A 39 739 8 HOH HOH . G 6 HOH A 40 740 91 HOH HOH . G 6 HOH A 41 741 20 HOH HOH . G 6 HOH A 42 742 111 HOH HOH . G 6 HOH A 43 743 28 HOH HOH . G 6 HOH A 44 744 13 HOH HOH . G 6 HOH A 45 745 76 HOH HOH . G 6 HOH A 46 746 65 HOH HOH . G 6 HOH A 47 747 32 HOH HOH . G 6 HOH A 48 748 18 HOH HOH . G 6 HOH A 49 749 126 HOH HOH . G 6 HOH A 50 750 148 HOH HOH . G 6 HOH A 51 751 72 HOH HOH . G 6 HOH A 52 752 94 HOH HOH . G 6 HOH A 53 753 146 HOH HOH . G 6 HOH A 54 754 10 HOH HOH . G 6 HOH A 55 755 74 HOH HOH . G 6 HOH A 56 756 64 HOH HOH . G 6 HOH A 57 757 121 HOH HOH . G 6 HOH A 58 758 15 HOH HOH . G 6 HOH A 59 759 34 HOH HOH . G 6 HOH A 60 760 131 HOH HOH . G 6 HOH A 61 761 61 HOH HOH . G 6 HOH A 62 762 130 HOH HOH . G 6 HOH A 63 763 48 HOH HOH . G 6 HOH A 64 764 88 HOH HOH . G 6 HOH A 65 765 133 HOH HOH . G 6 HOH A 66 766 93 HOH HOH . G 6 HOH A 67 767 79 HOH HOH . G 6 HOH A 68 768 77 HOH HOH . G 6 HOH A 69 769 122 HOH HOH . G 6 HOH A 70 770 42 HOH HOH . G 6 HOH A 71 771 59 HOH HOH . G 6 HOH A 72 772 147 HOH HOH . G 6 HOH A 73 773 140 HOH HOH . G 6 HOH A 74 774 81 HOH HOH . G 6 HOH A 75 775 47 HOH HOH . G 6 HOH A 76 776 67 HOH HOH . G 6 HOH A 77 777 33 HOH HOH . G 6 HOH A 78 778 62 HOH HOH . G 6 HOH A 79 779 97 HOH HOH . G 6 HOH A 80 780 83 HOH HOH . G 6 HOH A 81 781 145 HOH HOH . G 6 HOH A 82 782 17 HOH HOH . G 6 HOH A 83 783 119 HOH HOH . G 6 HOH A 84 784 46 HOH HOH . G 6 HOH A 85 785 127 HOH HOH . G 6 HOH A 86 786 25 HOH HOH . G 6 HOH A 87 787 30 HOH HOH . G 6 HOH A 88 788 128 HOH HOH . G 6 HOH A 89 789 84 HOH HOH . G 6 HOH A 90 790 41 HOH HOH . G 6 HOH A 91 791 36 HOH HOH . G 6 HOH A 92 792 54 HOH HOH . G 6 HOH A 93 793 106 HOH HOH . G 6 HOH A 94 794 113 HOH HOH . G 6 HOH A 95 795 141 HOH HOH . G 6 HOH A 96 796 31 HOH HOH . G 6 HOH A 97 797 29 HOH HOH . G 6 HOH A 98 798 35 HOH HOH . G 6 HOH A 99 799 21 HOH HOH . G 6 HOH A 100 800 73 HOH HOH . G 6 HOH A 101 801 101 HOH HOH . G 6 HOH A 102 802 23 HOH HOH . G 6 HOH A 103 803 39 HOH HOH . G 6 HOH A 104 804 2 HOH HOH . G 6 HOH A 105 805 40 HOH HOH . G 6 HOH A 106 806 142 HOH HOH . G 6 HOH A 107 807 38 HOH HOH . G 6 HOH A 108 808 49 HOH HOH . G 6 HOH A 109 809 53 HOH HOH . G 6 HOH A 110 810 135 HOH HOH . G 6 HOH A 111 811 14 HOH HOH . G 6 HOH A 112 812 60 HOH HOH . G 6 HOH A 113 813 43 HOH HOH . G 6 HOH A 114 814 124 HOH HOH . G 6 HOH A 115 815 63 HOH HOH . G 6 HOH A 116 816 98 HOH HOH . G 6 HOH A 117 817 52 HOH HOH . G 6 HOH A 118 818 109 HOH HOH . G 6 HOH A 119 819 27 HOH HOH . G 6 HOH A 120 820 115 HOH HOH . G 6 HOH A 121 821 51 HOH HOH . G 6 HOH A 122 822 80 HOH HOH . G 6 HOH A 123 823 7 HOH HOH . G 6 HOH A 124 824 100 HOH HOH . G 6 HOH A 125 825 134 HOH HOH . G 6 HOH A 126 826 120 HOH HOH . G 6 HOH A 127 827 82 HOH HOH . G 6 HOH A 128 828 24 HOH HOH . G 6 HOH A 129 829 96 HOH HOH . G 6 HOH A 130 830 55 HOH HOH . G 6 HOH A 131 831 90 HOH HOH . G 6 HOH A 132 832 114 HOH HOH . G 6 HOH A 133 833 144 HOH HOH . G 6 HOH A 134 834 143 HOH HOH . G 6 HOH A 135 835 102 HOH HOH . G 6 HOH A 136 836 57 HOH HOH . G 6 HOH A 137 837 108 HOH HOH . G 6 HOH A 138 838 99 HOH HOH . G 6 HOH A 139 839 139 HOH HOH . G 6 HOH A 140 840 4 HOH HOH . G 6 HOH A 141 841 110 HOH HOH . G 6 HOH A 142 842 104 HOH HOH . G 6 HOH A 143 843 132 HOH HOH . G 6 HOH A 144 844 87 HOH HOH . G 6 HOH A 145 845 3 HOH HOH . G 6 HOH A 146 846 92 HOH HOH . G 6 HOH A 147 847 68 HOH HOH . G 6 HOH A 148 848 22 HOH HOH . G 6 HOH A 149 849 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 M39 . . . E 4 32.983 17.486 29.776 1 88.87 ? O10 M39 604 A 1 HETATM 2 C C9 M39 . . . E 4 33.609 17.221 28.724 1 87.44 ? C9 M39 604 A 1 HETATM 3 C C3 M39 . . . E 4 32.843 16.523 27.656 1 83.79 ? C3 M39 604 A 1 HETATM 4 C C4 M39 . . . E 4 31.494 16.066 27.54 1 87.85 ? C4 M39 604 A 1 HETATM 5 N N5 M39 . . . E 4 31.366 15.476 26.326 1 83.09 ? N5 M39 604 A 1 HETATM 6 N N1 M39 . . . E 4 32.617 15.568 25.655 1 78.2 ? N1 M39 604 A 1 HETATM 7 C C2 M39 . . . E 4 33.555 16.193 26.406 1 84.43 ? C2 M39 604 A 1 HETATM 8 N N6 M39 . . . E 4 34.862 16.534 26.264 1 72.17 ? N6 M39 604 A 1 HETATM 9 N N8 M39 . . . E 4 34.997 17.561 28.516 1 89.84 ? N8 M39 604 A 1 HETATM 10 C C19 M39 . . . E 4 35.702 18.301 29.547 1 94.68 ? C19 M39 604 A 1 HETATM 11 C C20 M39 . . . E 4 35.139 19.548 29.909 1 99.47 ? C20 M39 604 A 1 HETATM 12 C C21 M39 . . . E 4 35.704 20.377 30.888 1 97.94 ? C21 M39 604 A 1 HETATM 13 C C22 M39 . . . E 4 36.881 20 31.537 1 98.24 ? C22 M39 604 A 1 HETATM 14 C C23 M39 . . . E 4 37.506 18.789 31.231 1 88.03 ? C23 M39 604 A 1 HETATM 15 C C24 M39 . . . E 4 36.969 17.934 30.264 1 89.74 ? C24 M39 604 A 1 HETATM 16 C C25 M39 . . . E 4 37.7 16.664 29.987 1 85.55 ? C25 M39 604 A 1 HETATM 17 C C7 M39 . . . E 4 35.574 17.193 27.238 1 87.18 ? C7 M39 604 A 1 HETATM 18 S S11 M39 . . . E 4 37.188 17.481 26.784 1 87.77 ? S11 M39 604 A 1 HETATM 19 C C12 M39 . . . E 4 37.343 16.652 25.211 1 89.29 ? C12 M39 604 A 1 HETATM 20 C C13 M39 . . . E 4 38.729 16.135 24.945 1 85.3 ? C13 M39 604 A 1 HETATM 21 C C18 M39 . . . E 4 38.956 14.78 24.777 1 90.12 ? C18 M39 604 A 1 HETATM 22 C C17 M39 . . . E 4 40.252 14.337 24.539 1 95.39 ? C17 M39 604 A 1 HETATM 23 F F26 M39 . . . E 4 40.53 12.888 24.366 1 103.47 ? F26 M39 604 A 1 HETATM 24 C C14 M39 . . . E 4 39.787 17.026 24.861 1 94.17 ? C14 M39 604 A 1 HETATM 25 C C15 M39 . . . E 4 41.08 16.574 24.611 1 95.39 ? C15 M39 604 A 1 HETATM 26 C C16 M39 . . . E 4 41.315 15.221 24.453 1 95.13 ? C16 M39 604 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #