data_5TER # _model_server_result.job_id CXNX2KHP8oVIgC3UDQGrcQ _model_server_result.datetime_utc '2024-11-16 09:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ter # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5TER # _exptl.entry_id 5TER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.87 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloro-7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-8-methyl-2-naphthonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.98 _cell.angle_gamma 90 _cell.entry_id 5TER _cell.length_a 162.62 _cell.length_b 74.2 _cell.length_c 108.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TER _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A OE2 GLU 480 A GLU 478 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc3 A OD1 ASP 500 A ASP 498 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc4 A OD2 ASP 500 A ASP 498 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? # _chem_comp.formula 'C24 H18 Cl N3 O4' _chem_comp.formula_weight 447.87 _chem_comp.id 7AY _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-8-methyl-2-naphthonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms JLJ651 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0Q C0K 7AY doub 1 n n C0E C0D 7AY sing 2 n n C0E N0H 7AY sing 3 n n C0K N0H 7AY sing 4 n n C0K N0M 7AY sing 5 n n C0D O0B 7AY sing 6 n n N0H C0P 7AY sing 7 n n N0M C0N 7AY sing 8 n n C0P C0O 7AY doub 9 n n O0B C05 7AY sing 10 n n C0N C0O 7AY sing 11 n n C0N O0S 7AY doub 12 n n C00 C05 7AY doub 13 n y C00 C01 7AY sing 14 n y C05 C04 7AY sing 15 n y C01 C02 7AY doub 16 n y C04 O0A 7AY sing 17 n n C04 C03 7AY doub 18 n y C02 C03 7AY sing 19 n y O0A CAL 7AY sing 20 n n CAM CAL 7AY doub 21 n y CAM CAH 7AY sing 22 n y CAL CAK 7AY sing 23 n y CL1 CAH 7AY sing 24 n n CAH CAI 7AY doub 25 n y CAK C31 7AY sing 26 n n CAK CAJ 7AY doub 27 n y CAI CAJ 7AY sing 28 n y CAI CAY 7AY sing 29 n y CAJ CBB 7AY sing 30 n y CAY CAZ 7AY doub 31 n y CBB CBA 7AY doub 32 n y CAZ CBA 7AY sing 33 n y CBA CBC 7AY sing 34 n n CBC NBD 7AY trip 35 n n CAM H1 7AY sing 36 n n CAY H2 7AY sing 37 n n CAZ H3 7AY sing 38 n n CBB H4 7AY sing 39 n n C0P H5 7AY sing 40 n n C00 H6 7AY sing 41 n n C0D H7 7AY sing 42 n n C0D H8 7AY sing 43 n n C0E H9 7AY sing 44 n n C0E H10 7AY sing 45 n n C0O H11 7AY sing 46 n n N0M H12 7AY sing 47 n n C01 H13 7AY sing 48 n n C02 H14 7AY sing 49 n n C03 H15 7AY sing 50 n n C31 H16 7AY sing 51 n n C31 H17 7AY sing 52 n n C31 H18 7AY sing 53 n n # _atom_sites.entry_id 5TER _atom_sites.fract_transf_matrix[1][1] 0.006149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 7AY A 1 601 1 7AY 649 . D 4 SO4 A 1 602 2 SO4 SO4 . E 5 MG A 1 603 1 MG MG . F 6 HOH A 1 701 9 HOH HOH . F 6 HOH A 2 702 7 HOH HOH . F 6 HOH A 3 703 8 HOH HOH . F 6 HOH A 4 704 1 HOH HOH . F 6 HOH A 5 705 10 HOH HOH . F 6 HOH A 6 706 20 HOH HOH . F 6 HOH A 7 707 18 HOH HOH . F 6 HOH A 8 708 4 HOH HOH . F 6 HOH A 9 709 5 HOH HOH . F 6 HOH A 10 710 3 HOH HOH . G 6 HOH B 1 501 2 HOH HOH . G 6 HOH B 2 502 17 HOH HOH . G 6 HOH B 3 503 21 HOH HOH . G 6 HOH B 4 504 11 HOH HOH . G 6 HOH B 5 505 15 HOH HOH . G 6 HOH B 6 506 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7AY . . . C 3 356.291 -30.62 144.442 1 74.07 ? CAH 7AY 601 A 1 HETATM 2 C CAI 7AY . . . C 3 355.578 -31.373 145.414 1 76.74 ? CAI 7AY 601 A 1 HETATM 3 C CAJ 7AY . . . C 3 355.94 -32.692 145.632 1 72.97 ? CAJ 7AY 601 A 1 HETATM 4 C CAK 7AY . . . C 3 357.001 -33.274 144.897 1 75.29 ? CAK 7AY 601 A 1 HETATM 5 C CAL 7AY . . . C 3 357.696 -32.521 143.942 1 70.05 ? CAL 7AY 601 A 1 HETATM 6 C CAM 7AY . . . C 3 357.34 -31.195 143.715 1 73.15 ? CAM 7AY 601 A 1 HETATM 7 C CAY 7AY . . . C 3 354.484 -30.788 146.176 1 83.18 ? CAY 7AY 601 A 1 HETATM 8 C CAZ 7AY . . . C 3 353.821 -31.544 147.103 1 85.02 ? CAZ 7AY 601 A 1 HETATM 9 C CBA 7AY . . . C 3 354.198 -32.915 147.33 1 83.6 ? CBA 7AY 601 A 1 HETATM 10 C CBB 7AY . . . C 3 355.239 -33.481 146.608 1 73.18 ? CBB 7AY 601 A 1 HETATM 11 C CBC 7AY . . . C 3 353.463 -33.755 148.358 1 88.5 ? CBC 7AY 601 A 1 HETATM 12 N NBD 7AY . . . C 3 352.91 -34.406 149.14 1 90.92 ? NBD 7AY 601 A 1 HETATM 13 C C0P 7AY . . . C 3 356.53 -34.982 140.417 1 69.14 ? C0P 7AY 601 A 1 HETATM 14 C C00 7AY . . . C 3 361.07 -31.366 140.86 1 63.11 ? C00 7AY 601 A 1 HETATM 15 C C0D 7AY . . . C 3 358.997 -32.884 139.159 1 70.7 ? C0D 7AY 601 A 1 HETATM 16 C C0E 7AY . . . C 3 357.707 -33.642 138.748 1 73.65 ? C0E 7AY 601 A 1 HETATM 17 C C0K 7AY . . . C 3 358.309 -36.074 139.153 1 73.15 ? C0K 7AY 601 A 1 HETATM 18 C C0N 7AY . . . C 3 357.074 -37.323 140.842 1 73 ? C0N 7AY 601 A 1 HETATM 19 C C0O 7AY . . . C 3 356.281 -36.121 141.115 1 74.93 ? C0O 7AY 601 A 1 HETATM 20 N N0H 7AY . . . C 3 357.549 -34.952 139.426 1 71.3 ? N0H 7AY 601 A 1 HETATM 21 N N0M 7AY . . . C 3 358.019 -37.183 139.881 1 69.09 ? N0M 7AY 601 A 1 HETATM 22 O O0A 7AY . . . C 3 358.781 -33.109 143.185 1 62.29 ? O0A 7AY 601 A 1 HETATM 23 O O0B 7AY . . . C 3 359.015 -32.806 140.583 1 65.61 ? O0B 7AY 601 A 1 HETATM 24 O O0Q 7AY . . . C 3 359.204 -36.117 138.312 1 75.99 ? O0Q 7AY 601 A 1 HETATM 25 O O0S 7AY . . . C 3 356.915 -38.391 141.425 1 73.54 ? O0S 7AY 601 A 1 HETATM 26 C C01 7AY . . . C 3 361.972 -30.777 141.778 1 70.83 ? C01 7AY 601 A 1 HETATM 27 C C02 7AY . . . C 3 361.803 -30.969 143.167 1 71.1 ? C02 7AY 601 A 1 HETATM 28 C C03 7AY . . . C 3 360.733 -31.751 143.648 1 60.78 ? C03 7AY 601 A 1 HETATM 29 C C04 7AY . . . C 3 359.826 -32.343 142.73 1 65.14 ? C04 7AY 601 A 1 HETATM 30 C C05 7AY . . . C 3 359.981 -32.161 141.335 1 66.49 ? C05 7AY 601 A 1 HETATM 31 C C31 7AY . . . C 3 357.355 -34.718 145.172 1 72.65 ? C31 7AY 601 A 1 HETATM 32 CL CL1 7AY . . . C 3 355.88 -28.958 144.127 1 82.1 ? CL1 7AY 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #