data_5TF3 # _model_server_result.job_id epsnAFgORbgzRiPbYWXoUA _model_server_result.datetime_utc '2025-03-04 09:02:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5TF3 # _exptl.entry_id 5TF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TF3 _cell.length_a 75.094 _cell.length_b 75.094 _cell.length_c 73.772 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 26 A SER 44 1_555 A N MSE 27 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 27 A MSE 45 1_555 A N LEU 28 A LEU 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLU 30 A GLU 48 1_555 A N MSE 31 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 31 A MSE 49 1_555 A N GLY 32 A GLY 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C GLN 37 A GLN 55 1_555 A N MSE 38 A MSE 56 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C GLN 37 A GLN 55 1_555 A N MSE 38 A MSE 56 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 38 A MSE 56 1_555 A N PHE 39 A PHE 57 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 A C MSE 38 A MSE 56 1_555 A N PHE 39 A PHE 57 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5TF3 _atom_sites.fract_transf_matrix[1][1] 0.013317 _atom_sites.fract_transf_matrix[1][2] 0.007688 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013555 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 160 EDO EDO . C 3 HOH A 1 301 5 HOH HOH . C 3 HOH A 2 302 29 HOH HOH . C 3 HOH A 3 303 13 HOH HOH . C 3 HOH A 4 304 15 HOH HOH . C 3 HOH A 5 305 23 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 20 HOH HOH . C 3 HOH A 8 308 4 HOH HOH . C 3 HOH A 9 309 32 HOH HOH . C 3 HOH A 10 310 7 HOH HOH . C 3 HOH A 11 311 14 HOH HOH . C 3 HOH A 12 312 61 HOH HOH . C 3 HOH A 13 313 2 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 56 HOH HOH . C 3 HOH A 16 316 38 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 12 HOH HOH . C 3 HOH A 19 319 59 HOH HOH . C 3 HOH A 20 320 21 HOH HOH . C 3 HOH A 21 321 31 HOH HOH . C 3 HOH A 22 322 36 HOH HOH . C 3 HOH A 23 323 9 HOH HOH . C 3 HOH A 24 324 10 HOH HOH . C 3 HOH A 25 325 39 HOH HOH . C 3 HOH A 26 326 3 HOH HOH . C 3 HOH A 27 327 45 HOH HOH . C 3 HOH A 28 328 25 HOH HOH . C 3 HOH A 29 329 18 HOH HOH . C 3 HOH A 30 330 51 HOH HOH . C 3 HOH A 31 331 6 HOH HOH . C 3 HOH A 32 332 60 HOH HOH . C 3 HOH A 33 333 52 HOH HOH . C 3 HOH A 34 334 55 HOH HOH . C 3 HOH A 35 335 11 HOH HOH . C 3 HOH A 36 336 48 HOH HOH . C 3 HOH A 37 337 34 HOH HOH . C 3 HOH A 38 338 50 HOH HOH . C 3 HOH A 39 339 19 HOH HOH . C 3 HOH A 40 340 35 HOH HOH . C 3 HOH A 41 341 27 HOH HOH . C 3 HOH A 42 342 49 HOH HOH . C 3 HOH A 43 343 37 HOH HOH . C 3 HOH A 44 344 54 HOH HOH . C 3 HOH A 45 345 57 HOH HOH . C 3 HOH A 46 346 1 HOH HOH . C 3 HOH A 47 347 33 HOH HOH . C 3 HOH A 48 348 58 HOH HOH . C 3 HOH A 49 349 30 HOH HOH . C 3 HOH A 50 350 22 HOH HOH . C 3 HOH A 51 351 41 HOH HOH . C 3 HOH A 52 352 46 HOH HOH . C 3 HOH A 53 353 47 HOH HOH . C 3 HOH A 54 354 40 HOH HOH . C 3 HOH A 55 355 43 HOH HOH . C 3 HOH A 56 356 44 HOH HOH . C 3 HOH A 57 357 42 HOH HOH . C 3 HOH A 58 358 28 HOH HOH . C 3 HOH A 59 359 26 HOH HOH . C 3 HOH A 60 360 53 HOH HOH . C 3 HOH A 61 361 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -18.644 31.454 11.216 0.48 44.22 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 -20.016 31.225 10.881 0.48 44.23 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 -18.61 32.239 12.528 0.48 44.67 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 -17.434 33.052 12.565 0.48 44.59 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #