data_5TF9
#
_model_server_result.job_id            J9XpiLKMVsRLhZvt5SLQKg 
_model_server_result.datetime_utc      '2024-11-04 20:16:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5TF9 
#
_exptl.entry_id    5TF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.5 
_cell.angle_gamma         90 
_cell.entry_id            5TF9 
_cell.length_a            83.065 
_cell.length_b            104.482 
_cell.length_c            69.604 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 150 A ASN 354 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc2 A OD2 ASP 164 A ASP 368 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc3 A O SER 219 A SER 423 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
metalc ? metalc4 A O CYS 221 A CYS 425 1_555 F CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc5 D O1A ANP . A ANP 502 1_555 E MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc6 F CA CA . A CA 504 1_555 J O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
metalc ? metalc7 F CA CA . A CA 504 1_555 K O HOH . B HOH 638 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc8 B OD1 ASN 150 B ASN 354 1_555 I MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc9 B OD2 ASP 164 B ASP 368 1_555 I MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc10 H O2A ANP . B ANP 502 1_555 I MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc11 I MN MN . B MN 503 1_555 K O HOH . B HOH 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 72 n n 
PG O2G ANP sing 73 n n 
PG O3G ANP sing 74 n n 
PG N3B ANP sing 75 n n 
O2G HOG2 ANP sing 76 n n 
O3G HOG3 ANP sing 77 n n 
PB O1B ANP doub 78 n n 
PB O2B ANP sing 79 n n 
PB N3B ANP sing 80 n n 
PB O3A ANP sing 81 n n 
O2B HOB2 ANP sing 82 n n 
N3B HNB1 ANP sing 83 n n 
PA O1A ANP doub 84 n n 
PA O2A ANP sing 85 n n 
PA O3A ANP sing 86 n n 
PA O5' ANP sing 87 n n 
O2A HOA2 ANP sing 88 n n 
O5' C5' ANP sing 89 n n 
C5' C4' ANP sing 90 n n 
C5' "H5'1" ANP sing 91 n n 
C5' "H5'2" ANP sing 92 n n 
C4' O4' ANP sing 93 n n 
C4' C3' ANP sing 94 n n 
C4' H4' ANP sing 95 n n 
O4' C1' ANP sing 96 n n 
C3' O3' ANP sing 97 n n 
C3' C2' ANP sing 98 n n 
C3' H3' ANP sing 99 n n 
O3' HO3' ANP sing 100 n n 
C2' O2' ANP sing 101 n n 
C2' C1' ANP sing 102 n n 
C2' H2' ANP sing 103 n n 
O2' HO2' ANP sing 104 n n 
C1' N9 ANP sing 105 n n 
C1' H1' ANP sing 106 n n 
N9 C8 ANP sing 107 n y 
N9 C4 ANP sing 108 n y 
C8 N7 ANP doub 109 n y 
C8 H8 ANP sing 110 n n 
N7 C5 ANP sing 111 n y 
C5 C6 ANP sing 112 n y 
C5 C4 ANP doub 113 n y 
C6 N6 ANP sing 114 n n 
C6 N1 ANP doub 115 n y 
N6 HN61 ANP sing 116 n n 
N6 HN62 ANP sing 117 n n 
N1 C2 ANP sing 118 n y 
C2 N3 ANP doub 119 n y 
C2 H2 ANP sing 120 n n 
N3 C4 ANP sing 121 n y 
#
_atom_sites.entry_id                     5TF9 
_atom_sites.fract_transf_matrix[1][1]    0.012039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009571 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7AV A 1 501 1 7AV LI1 . 
D 3 ANP A 1 502 2 ANP ANP . 
E 4 MN A 1 503 1 MN MN . 
F 5 CA A 1 504 3 CA CA . 
G 2 7AV B 1 501 1 7AV LI1 . 
H 3 ANP B 1 502 2 ANP ANP . 
I 4 MN B 1 503 2 MN MN . 
J 6 HOH A 1 601 85 HOH HOH . 
J 6 HOH A 2 602 1 HOH HOH . 
J 6 HOH A 3 603 57 HOH HOH . 
J 6 HOH A 4 604 53 HOH HOH . 
J 6 HOH A 5 605 66 HOH HOH . 
J 6 HOH A 6 606 44 HOH HOH . 
J 6 HOH A 7 607 50 HOH HOH . 
J 6 HOH A 8 608 76 HOH HOH . 
J 6 HOH A 9 609 3 HOH HOH . 
J 6 HOH A 10 610 47 HOH HOH . 
J 6 HOH A 11 611 82 HOH HOH . 
J 6 HOH A 12 612 79 HOH HOH . 
J 6 HOH A 13 613 58 HOH HOH . 
J 6 HOH A 14 614 59 HOH HOH . 
J 6 HOH A 15 615 81 HOH HOH . 
J 6 HOH A 16 616 68 HOH HOH . 
J 6 HOH A 17 617 52 HOH HOH . 
J 6 HOH A 18 618 70 HOH HOH . 
J 6 HOH A 19 619 45 HOH HOH . 
J 6 HOH A 20 620 48 HOH HOH . 
J 6 HOH A 21 621 43 HOH HOH . 
J 6 HOH A 22 622 69 HOH HOH . 
J 6 HOH A 23 623 46 HOH HOH . 
J 6 HOH A 24 624 49 HOH HOH . 
J 6 HOH A 25 625 60 HOH HOH . 
J 6 HOH A 26 626 72 HOH HOH . 
J 6 HOH A 27 627 55 HOH HOH . 
J 6 HOH A 28 628 75 HOH HOH . 
J 6 HOH A 29 629 67 HOH HOH . 
J 6 HOH A 30 630 65 HOH HOH . 
J 6 HOH A 31 631 54 HOH HOH . 
J 6 HOH A 32 632 64 HOH HOH . 
J 6 HOH A 33 633 61 HOH HOH . 
J 6 HOH A 34 634 71 HOH HOH . 
J 6 HOH A 35 635 62 HOH HOH . 
J 6 HOH A 36 636 63 HOH HOH . 
J 6 HOH A 37 637 89 HOH HOH . 
J 6 HOH A 38 638 90 HOH HOH . 
J 6 HOH A 39 639 56 HOH HOH . 
J 6 HOH A 40 640 51 HOH HOH . 
J 6 HOH A 41 641 41 HOH HOH . 
K 6 HOH B 1 601 23 HOH HOH . 
K 6 HOH B 2 602 83 HOH HOH . 
K 6 HOH B 3 603 38 HOH HOH . 
K 6 HOH B 4 604 5 HOH HOH . 
K 6 HOH B 5 605 9 HOH HOH . 
K 6 HOH B 6 606 12 HOH HOH . 
K 6 HOH B 7 607 35 HOH HOH . 
K 6 HOH B 8 608 32 HOH HOH . 
K 6 HOH B 9 609 21 HOH HOH . 
K 6 HOH B 10 610 2 HOH HOH . 
K 6 HOH B 11 611 15 HOH HOH . 
K 6 HOH B 12 612 73 HOH HOH . 
K 6 HOH B 13 613 20 HOH HOH . 
K 6 HOH B 14 614 28 HOH HOH . 
K 6 HOH B 15 615 14 HOH HOH . 
K 6 HOH B 16 616 78 HOH HOH . 
K 6 HOH B 17 617 11 HOH HOH . 
K 6 HOH B 18 618 24 HOH HOH . 
K 6 HOH B 19 619 25 HOH HOH . 
K 6 HOH B 20 620 33 HOH HOH . 
K 6 HOH B 21 621 74 HOH HOH . 
K 6 HOH B 22 622 42 HOH HOH . 
K 6 HOH B 23 623 22 HOH HOH . 
K 6 HOH B 24 624 10 HOH HOH . 
K 6 HOH B 25 625 86 HOH HOH . 
K 6 HOH B 26 626 7 HOH HOH . 
K 6 HOH B 27 627 37 HOH HOH . 
K 6 HOH B 28 628 36 HOH HOH . 
K 6 HOH B 29 629 29 HOH HOH . 
K 6 HOH B 30 630 4 HOH HOH . 
K 6 HOH B 31 631 26 HOH HOH . 
K 6 HOH B 32 632 27 HOH HOH . 
K 6 HOH B 33 633 80 HOH HOH . 
K 6 HOH B 34 634 13 HOH HOH . 
K 6 HOH B 35 635 34 HOH HOH . 
K 6 HOH B 36 636 6 HOH HOH . 
K 6 HOH B 37 637 30 HOH HOH . 
K 6 HOH B 38 638 88 HOH HOH . 
K 6 HOH B 39 639 87 HOH HOH . 
K 6 HOH B 40 640 31 HOH HOH . 
K 6 HOH B 41 641 39 HOH HOH . 
K 6 HOH B 42 642 18 HOH HOH . 
K 6 HOH B 43 643 8 HOH HOH . 
K 6 HOH B 44 644 19 HOH HOH . 
K 6 HOH B 45 645 40 HOH HOH . 
K 6 HOH B 46 646 84 HOH HOH . 
K 6 HOH B 47 647 16 HOH HOH . 
K 6 HOH B 48 648 17 HOH HOH . 
K 6 HOH B 49 649 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . D 3 12.913 1.338 14.047 1 87.88 ? PG ANP 502 A 1 
HETATM 2 O O1G ANP . . . D 3 12.03 1.153 12.852 1 74.69 ? O1G ANP 502 A 1 
HETATM 3 O O2G ANP . . . D 3 14.373 0.861 13.675 1 69.82 ? O2G ANP 502 A 1 
HETATM 4 O O3G ANP . . . D 3 12.379 0.447 15.243 1 78.96 ? O3G ANP 502 A 1 
HETATM 5 P PB ANP . . . D 3 11.741 3.579 15.436 1 85.42 ? PB ANP 502 A 1 
HETATM 6 O O1B ANP . . . D 3 10.825 2.483 15.882 1 77.56 ? O1B ANP 502 A 1 
HETATM 7 O O2B ANP . . . D 3 12.381 4.212 16.709 1 77.48 ? O2B ANP 502 A 1 
HETATM 8 N N3B ANP . . . D 3 12.981 2.989 14.459 1 88 ? N3B ANP 502 A 1 
HETATM 9 P PA ANP . . . D 3 10.689 4.855 13.144 1 68.13 ? PA ANP 502 A 1 
HETATM 10 O O1A ANP . . . D 3 11.898 4.238 12.435 1 73.46 ? O1A ANP 502 A 1 
HETATM 11 O O2A ANP . . . D 3 10.458 6.275 12.79 1 71.69 ? O2A ANP 502 A 1 
HETATM 12 O O3A ANP . . . D 3 10.902 4.696 14.726 1 74.65 ? O3A ANP 502 A 1 
HETATM 13 O O5' ANP . . . D 3 9.348 4.077 12.796 1 68.66 ? O5' ANP 502 A 1 
HETATM 14 C C5' ANP . . . D 3 8.756 4.176 11.478 1 64.13 ? C5' ANP 502 A 1 
HETATM 15 C C4' ANP . . . D 3 7.328 4.649 11.598 1 57.41 ? C4' ANP 502 A 1 
HETATM 16 O O4' ANP . . . D 3 7.27 6.075 11.39 1 57.17 ? O4' ANP 502 A 1 
HETATM 17 C C3' ANP . . . D 3 6.351 4.03 10.601 1 61.19 ? C3' ANP 502 A 1 
HETATM 18 O O3' ANP . . . D 3 5.07 3.782 11.17 1 66.06 ? O3' ANP 502 A 1 
HETATM 19 C C2' ANP . . . D 3 6.307 5.054 9.461 1 59.97 ? C2' ANP 502 A 1 
HETATM 20 O O2' ANP . . . D 3 5.016 5.13 8.864 1 54.39 ? O2' ANP 502 A 1 
HETATM 21 C C1' ANP . . . D 3 6.647 6.379 10.156 1 55.69 ? C1' ANP 502 A 1 
HETATM 22 N N9 ANP . . . D 3 7.565 7.201 9.371 1 49.76 ? N9 ANP 502 A 1 
HETATM 23 C C8 ANP . . . D 3 8.901 7.408 9.61 1 52.06 ? C8 ANP 502 A 1 
HETATM 24 N N7 ANP . . . D 3 9.488 8.174 8.722 1 46.38 ? N7 ANP 502 A 1 
HETATM 25 C C5 ANP . . . D 3 8.475 8.484 7.827 1 47.15 ? C5 ANP 502 A 1 
HETATM 26 C C6 ANP . . . D 3 8.448 9.264 6.654 1 40.44 ? C6 ANP 502 A 1 
HETATM 27 N N6 ANP . . . D 3 9.517 9.902 6.162 1 37.05 ? N6 ANP 502 A 1 
HETATM 28 N N1 ANP . . . D 3 7.269 9.368 5.995 1 37.99 ? N1 ANP 502 A 1 
HETATM 29 C C2 ANP . . . D 3 6.198 8.732 6.487 1 43.17 ? C2 ANP 502 A 1 
HETATM 30 N N3 ANP . . . D 3 6.102 7.969 7.581 1 42.95 ? N3 ANP 502 A 1 
HETATM 31 C C4 ANP . . . D 3 7.281 7.884 8.212 1 49.25 ? C4 ANP 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#