data_5TFJ # _model_server_result.job_id 2nIjZiMm2iVTVTAIIljo3A _model_server_result.datetime_utc '2024-11-21 17:49:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 5TFJ # _exptl.entry_id 5TFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TFJ _cell.length_a 40.142 _cell.length_b 40.142 _cell.length_c 141.742 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 48 A THR 465 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A OE1 GLN 76 A GLN 493 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 B MG MG . A MG 701 1_555 C O2B DCP . A DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 B MG MG . A MG 701 1_555 C O3G DCP . A DCP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc5 B MG MG . A MG 701 1_555 D O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 B MG MG . A MG 701 1_555 D O HOH . A HOH 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 83 n n N1 C6 DCP sing 84 n n N1 C1' DCP sing 85 n n C2 N3 DCP sing 86 n n C2 O2 DCP doub 87 n n N3 C4 DCP doub 88 n n C4 C5 DCP sing 89 n n C4 N4 DCP sing 90 n n C5 C6 DCP doub 91 n n C5 H5 DCP sing 92 n n C6 H6 DCP sing 93 n n N4 HN41 DCP sing 94 n n N4 HN42 DCP sing 95 n n C1' C2' DCP sing 96 n n C1' O4' DCP sing 97 n n C1' H1' DCP sing 98 n n C2' C3' DCP sing 99 n n C2' "H2'1" DCP sing 100 n n C2' "H2'2" DCP sing 101 n n C3' C4' DCP sing 102 n n C3' O3' DCP sing 103 n n C3' H3' DCP sing 104 n n C4' O4' DCP sing 105 n n C4' C5' DCP sing 106 n n C4' H4' DCP sing 107 n n O3' HO3' DCP sing 108 n n C5' O5' DCP sing 109 n n C5' "H5'1" DCP sing 110 n n C5' "H5'2" DCP sing 111 n n O5' PA DCP sing 112 n n PA O1A DCP doub 113 n n PA O2A DCP sing 114 n n PA O3A DCP sing 115 n n O2A HOA2 DCP sing 116 n n O3A PB DCP sing 117 n n PB O1B DCP doub 118 n n PB O2B DCP sing 119 n n PB O3B DCP sing 120 n n O2B HOB2 DCP sing 121 n n O3B PG DCP sing 122 n n PG O1G DCP doub 123 n n PG O2G DCP sing 124 n n PG O3G DCP sing 125 n n O2G HOG2 DCP sing 126 n n O3G HOG3 DCP sing 127 n n # _atom_sites.entry_id 5TFJ _atom_sites.fract_transf_matrix[1][1] 0.024912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 700 MG MG . C 3 DCP A 1 702 1 DCP DCP . D 4 HOH A 1 801 108 HOH HOH . D 4 HOH A 2 802 59 HOH HOH . D 4 HOH A 3 803 53 HOH HOH . D 4 HOH A 4 804 75 HOH HOH . D 4 HOH A 5 805 122 HOH HOH . D 4 HOH A 6 806 117 HOH HOH . D 4 HOH A 7 807 38 HOH HOH . D 4 HOH A 8 808 104 HOH HOH . D 4 HOH A 9 809 50 HOH HOH . D 4 HOH A 10 810 11 HOH HOH . D 4 HOH A 11 811 1 HOH HOH . D 4 HOH A 12 812 170 HOH HOH . D 4 HOH A 13 813 109 HOH HOH . D 4 HOH A 14 814 17 HOH HOH . D 4 HOH A 15 815 49 HOH HOH . D 4 HOH A 16 816 91 HOH HOH . D 4 HOH A 17 817 44 HOH HOH . D 4 HOH A 18 818 167 HOH HOH . D 4 HOH A 19 819 12 HOH HOH . D 4 HOH A 20 820 19 HOH HOH . D 4 HOH A 21 821 92 HOH HOH . D 4 HOH A 22 822 80 HOH HOH . D 4 HOH A 23 823 4 HOH HOH . D 4 HOH A 24 824 56 HOH HOH . D 4 HOH A 25 825 177 HOH HOH . D 4 HOH A 26 826 101 HOH HOH . D 4 HOH A 27 827 135 HOH HOH . D 4 HOH A 28 828 46 HOH HOH . D 4 HOH A 29 829 66 HOH HOH . D 4 HOH A 30 830 14 HOH HOH . D 4 HOH A 31 831 136 HOH HOH . D 4 HOH A 32 832 112 HOH HOH . D 4 HOH A 33 833 176 HOH HOH . D 4 HOH A 34 834 6 HOH HOH . D 4 HOH A 35 835 37 HOH HOH . D 4 HOH A 36 836 25 HOH HOH . D 4 HOH A 37 837 125 HOH HOH . D 4 HOH A 38 838 28 HOH HOH . D 4 HOH A 39 839 9 HOH HOH . D 4 HOH A 40 840 181 HOH HOH . D 4 HOH A 41 841 42 HOH HOH . D 4 HOH A 42 842 132 HOH HOH . D 4 HOH A 43 843 13 HOH HOH . D 4 HOH A 44 844 72 HOH HOH . D 4 HOH A 45 845 87 HOH HOH . D 4 HOH A 46 846 86 HOH HOH . D 4 HOH A 47 847 78 HOH HOH . D 4 HOH A 48 848 183 HOH HOH . D 4 HOH A 49 849 43 HOH HOH . D 4 HOH A 50 850 131 HOH HOH . D 4 HOH A 51 851 118 HOH HOH . D 4 HOH A 52 852 65 HOH HOH . D 4 HOH A 53 853 84 HOH HOH . D 4 HOH A 54 854 98 HOH HOH . D 4 HOH A 55 855 8 HOH HOH . D 4 HOH A 56 856 90 HOH HOH . D 4 HOH A 57 857 7 HOH HOH . D 4 HOH A 58 858 142 HOH HOH . D 4 HOH A 59 859 54 HOH HOH . D 4 HOH A 60 860 36 HOH HOH . D 4 HOH A 61 861 191 HOH HOH . D 4 HOH A 62 862 5 HOH HOH . D 4 HOH A 63 863 93 HOH HOH . D 4 HOH A 64 864 169 HOH HOH . D 4 HOH A 65 865 32 HOH HOH . D 4 HOH A 66 866 27 HOH HOH . D 4 HOH A 67 867 2 HOH HOH . D 4 HOH A 68 868 97 HOH HOH . D 4 HOH A 69 869 96 HOH HOH . D 4 HOH A 70 870 58 HOH HOH . D 4 HOH A 71 871 111 HOH HOH . D 4 HOH A 72 872 35 HOH HOH . D 4 HOH A 73 873 57 HOH HOH . D 4 HOH A 74 874 173 HOH HOH . D 4 HOH A 75 875 166 HOH HOH . D 4 HOH A 76 876 73 HOH HOH . D 4 HOH A 77 877 114 HOH HOH . D 4 HOH A 78 878 10 HOH HOH . D 4 HOH A 79 879 68 HOH HOH . D 4 HOH A 80 880 69 HOH HOH . D 4 HOH A 81 881 29 HOH HOH . D 4 HOH A 82 882 121 HOH HOH . D 4 HOH A 83 883 15 HOH HOH . D 4 HOH A 84 884 182 HOH HOH . D 4 HOH A 85 885 3 HOH HOH . D 4 HOH A 86 886 107 HOH HOH . D 4 HOH A 87 887 85 HOH HOH . D 4 HOH A 88 888 159 HOH HOH . D 4 HOH A 89 889 79 HOH HOH . D 4 HOH A 90 890 94 HOH HOH . D 4 HOH A 91 891 143 HOH HOH . D 4 HOH A 92 892 89 HOH HOH . D 4 HOH A 93 893 67 HOH HOH . D 4 HOH A 94 894 70 HOH HOH . D 4 HOH A 95 895 74 HOH HOH . D 4 HOH A 96 896 127 HOH HOH . D 4 HOH A 97 897 103 HOH HOH . D 4 HOH A 98 898 45 HOH HOH . D 4 HOH A 99 899 151 HOH HOH . D 4 HOH A 100 900 60 HOH HOH . D 4 HOH A 101 901 61 HOH HOH . D 4 HOH A 102 902 39 HOH HOH . D 4 HOH A 103 903 193 HOH HOH . D 4 HOH A 104 904 24 HOH HOH . D 4 HOH A 105 905 40 HOH HOH . D 4 HOH A 106 906 146 HOH HOH . D 4 HOH A 107 907 33 HOH HOH . D 4 HOH A 108 908 16 HOH HOH . D 4 HOH A 109 909 138 HOH HOH . D 4 HOH A 110 910 158 HOH HOH . D 4 HOH A 111 911 186 HOH HOH . D 4 HOH A 112 912 163 HOH HOH . D 4 HOH A 113 913 106 HOH HOH . D 4 HOH A 114 914 31 HOH HOH . D 4 HOH A 115 915 26 HOH HOH . D 4 HOH A 116 916 20 HOH HOH . D 4 HOH A 117 917 105 HOH HOH . D 4 HOH A 118 918 48 HOH HOH . D 4 HOH A 119 919 18 HOH HOH . D 4 HOH A 120 920 63 HOH HOH . D 4 HOH A 121 921 21 HOH HOH . D 4 HOH A 122 922 192 HOH HOH . D 4 HOH A 123 923 62 HOH HOH . D 4 HOH A 124 924 99 HOH HOH . D 4 HOH A 125 925 22 HOH HOH . D 4 HOH A 126 926 160 HOH HOH . D 4 HOH A 127 927 148 HOH HOH . D 4 HOH A 128 928 102 HOH HOH . D 4 HOH A 129 929 150 HOH HOH . D 4 HOH A 130 930 100 HOH HOH . D 4 HOH A 131 931 156 HOH HOH . D 4 HOH A 132 932 178 HOH HOH . D 4 HOH A 133 933 23 HOH HOH . D 4 HOH A 134 934 95 HOH HOH . D 4 HOH A 135 935 180 HOH HOH . D 4 HOH A 136 936 51 HOH HOH . D 4 HOH A 137 937 34 HOH HOH . D 4 HOH A 138 938 147 HOH HOH . D 4 HOH A 139 939 52 HOH HOH . D 4 HOH A 140 940 175 HOH HOH . D 4 HOH A 141 941 162 HOH HOH . D 4 HOH A 142 942 171 HOH HOH . D 4 HOH A 143 943 83 HOH HOH . D 4 HOH A 144 944 149 HOH HOH . D 4 HOH A 145 945 82 HOH HOH . D 4 HOH A 146 946 110 HOH HOH . D 4 HOH A 147 947 194 HOH HOH . D 4 HOH A 148 948 126 HOH HOH . D 4 HOH A 149 949 188 HOH HOH . D 4 HOH A 150 950 76 HOH HOH . D 4 HOH A 151 951 120 HOH HOH . D 4 HOH A 152 952 145 HOH HOH . D 4 HOH A 153 953 81 HOH HOH . D 4 HOH A 154 954 116 HOH HOH . D 4 HOH A 155 955 113 HOH HOH . D 4 HOH A 156 956 41 HOH HOH . D 4 HOH A 157 957 55 HOH HOH . D 4 HOH A 158 958 154 HOH HOH . D 4 HOH A 159 959 30 HOH HOH . D 4 HOH A 160 960 47 HOH HOH . D 4 HOH A 161 961 140 HOH HOH . D 4 HOH A 162 962 124 HOH HOH . D 4 HOH A 163 963 153 HOH HOH . D 4 HOH A 164 964 130 HOH HOH . D 4 HOH A 165 965 115 HOH HOH . D 4 HOH A 166 966 71 HOH HOH . D 4 HOH A 167 967 184 HOH HOH . D 4 HOH A 168 968 88 HOH HOH . D 4 HOH A 169 969 139 HOH HOH . D 4 HOH A 170 970 190 HOH HOH . D 4 HOH A 171 971 179 HOH HOH . D 4 HOH A 172 972 164 HOH HOH . D 4 HOH A 173 973 161 HOH HOH . D 4 HOH A 174 974 134 HOH HOH . D 4 HOH A 175 975 64 HOH HOH . D 4 HOH A 176 976 119 HOH HOH . D 4 HOH A 177 977 174 HOH HOH . D 4 HOH A 178 978 144 HOH HOH . D 4 HOH A 179 979 129 HOH HOH . D 4 HOH A 180 980 157 HOH HOH . D 4 HOH A 181 981 165 HOH HOH . D 4 HOH A 182 982 187 HOH HOH . D 4 HOH A 183 983 189 HOH HOH . D 4 HOH A 184 984 123 HOH HOH . D 4 HOH A 185 985 168 HOH HOH . D 4 HOH A 186 986 137 HOH HOH . D 4 HOH A 187 987 185 HOH HOH . D 4 HOH A 188 988 133 HOH HOH . D 4 HOH A 189 989 155 HOH HOH . D 4 HOH A 190 990 195 HOH HOH . D 4 HOH A 191 991 128 HOH HOH . D 4 HOH A 192 992 77 HOH HOH . D 4 HOH A 193 993 141 HOH HOH . D 4 HOH A 194 994 196 HOH HOH . D 4 HOH A 195 995 152 HOH HOH . D 4 HOH A 196 996 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . C 3 -20.896 -16.698 -10.955 1 25.95 ? N1 DCP 702 A 1 HETATM 2 C C2 DCP . . . C 3 -20.105 -17.882 -10.497 1 28.14 ? C2 DCP 702 A 1 HETATM 3 N N3 DCP . . . C 3 -19.845 -18.065 -9.048 1 25.35 ? N3 DCP 702 A 1 HETATM 4 C C4 DCP . . . C 3 -20.345 -17.104 -8.088 1 25.08 ? C4 DCP 702 A 1 HETATM 5 C C5 DCP . . . C 3 -21.12 -15.926 -8.544 1 27.42 ? C5 DCP 702 A 1 HETATM 6 C C6 DCP . . . C 3 -21.39 -15.728 -9.99 1 25.08 ? C6 DCP 702 A 1 HETATM 7 O O2 DCP . . . C 3 -19.693 -18.667 -11.286 1 31.68 ? O2 DCP 702 A 1 HETATM 8 N N4 DCP . . . C 3 -20.084 -17.292 -6.674 1 33.85 ? N4 DCP 702 A 1 HETATM 9 C C1' DCP . . . C 3 -21.143 -16.495 -12.353 1 22.76 ? C1' DCP 702 A 1 HETATM 10 C C2' DCP . . . C 3 -22.421 -16.33 -12.618 1 24.57 ? C2' DCP 702 A 1 HETATM 11 C C3' DCP . . . C 3 -22.461 -15.312 -13.884 1 22.72 ? C3' DCP 702 A 1 HETATM 12 C C4' DCP . . . C 3 -21.363 -14.496 -13.789 1 20.13 ? C4' DCP 702 A 1 HETATM 13 O O4' DCP . . . C 3 -20.496 -15.081 -12.693 1 22.5 ? O4' DCP 702 A 1 HETATM 14 O O3' DCP . . . C 3 -22.371 -16.052 -15.095 1 31.52 ? O3' DCP 702 A 1 HETATM 15 C C5' DCP . . . C 3 -21.745 -13.091 -13.359 1 16.18 ? C5' DCP 702 A 1 HETATM 16 O O5' DCP . . . C 3 -22.52 -13.248 -12.222 1 16.07 ? O5' DCP 702 A 1 HETATM 17 P PA DCP . . . C 3 -23.041 -11.891 -11.464 1 15.31 ? PA DCP 702 A 1 HETATM 18 O O1A DCP . . . C 3 -21.876 -10.987 -11.196 1 12.27 -1 O1A DCP 702 A 1 HETATM 19 O O2A DCP . . . C 3 -23.772 -12.328 -10.218 1 14.89 ? O2A DCP 702 A 1 HETATM 20 O O3A DCP . . . C 3 -24.01 -11.215 -12.577 1 13.68 ? O3A DCP 702 A 1 HETATM 21 P PB DCP . . . C 3 -24.895 -9.857 -12.432 1 12.04 ? PB DCP 702 A 1 HETATM 22 O O1B DCP . . . C 3 -24.373 -8.861 -13.441 1 12.85 -1 O1B DCP 702 A 1 HETATM 23 O O2B DCP . . . C 3 -24.89 -9.37 -11.015 1 12.18 ? O2B DCP 702 A 1 HETATM 24 O O3B DCP . . . C 3 -26.343 -10.41 -12.938 1 14.95 ? O3B DCP 702 A 1 HETATM 25 P PG DCP . . . C 3 -27.811 -9.973 -12.372 1 14.99 ? PG DCP 702 A 1 HETATM 26 O O1G DCP . . . C 3 -28.231 -8.686 -13.039 1 15.11 ? O1G DCP 702 A 1 HETATM 27 O O2G DCP . . . C 3 -28.741 -11.085 -12.789 1 14.23 -1 O2G DCP 702 A 1 HETATM 28 O O3G DCP . . . C 3 -27.747 -9.793 -10.87 1 15.94 -1 O3G DCP 702 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #