data_5TFP # _model_server_result.job_id 26MnGfd1WQZ7edKCWDwYAg _model_server_result.datetime_utc '2025-07-31 14:29:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 5TFP # _exptl.entry_id 5TFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L(+)-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TFP _cell.length_a 69.474 _cell.length_b 69.474 _cell.length_c 120.06 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 12 A TRP 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 13 A MSE 13 1_555 A N GLU 14 A GLU 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ALA 52 A ALA 52 1_555 A N MSE 53 A MSE 53 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C ALA 52 A ALA 52 1_555 A N MSE 53 A MSE 53 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 53 A MSE 53 1_555 A N ILE 54 A ILE 54 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 53 A MSE 53 1_555 A N ILE 54 A ILE 54 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C TRP 12 B TRP 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale8 B C TRP 12 B TRP 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C MSE 13 B MSE 13 1_555 B N GLU 14 B GLU 14 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale10 B C MSE 13 B MSE 13 1_555 B N GLU 14 B GLU 14 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C ALA 52 B ALA 52 1_555 B N MSE 53 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 B C MSE 53 B MSE 53 1_555 B N ILE 54 B ILE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id TLA _chem_comp.mon_nstd_flag . _chem_comp.name 'L(+)-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 TLA doub 242 n n O11 C1 TLA sing 243 n n O11 H11 TLA sing 244 n n C1 C2 TLA sing 245 n n C2 O2 TLA sing 246 n n C2 C3 TLA sing 247 n n C2 H2 TLA sing 248 n n O2 HA TLA sing 249 n n C3 O3 TLA sing 250 n n C3 C4 TLA sing 251 n n C3 H3 TLA sing 252 n n O3 HB TLA sing 253 n n C4 O4 TLA doub 254 n n C4 O41 TLA sing 255 n n O41 H41 TLA sing 256 n n # _atom_sites.entry_id 5TFP _atom_sites.fract_transf_matrix[1][1] 0.014394 _atom_sites.fract_transf_matrix[1][2] 0.00831 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 101 90 GOL GOL . D 2 GOL A 1 102 91 GOL GOL . E 2 GOL A 1 103 92 GOL GOL . F 2 GOL A 1 104 93 GOL GOL . G 2 GOL A 1 105 94 GOL GOL . H 2 GOL A 1 106 95 GOL GOL . I 3 TLA B 1 101 89 TLA DTA . J 2 GOL B 1 102 90 GOL GOL . K 2 GOL B 1 103 91 GOL GOL . L 2 GOL B 1 104 92 GOL GOL . M 4 HOH A 1 201 21 HOH HOH . M 4 HOH A 2 202 33 HOH HOH . M 4 HOH A 3 203 45 HOH HOH . M 4 HOH A 4 204 16 HOH HOH . M 4 HOH A 5 205 13 HOH HOH . M 4 HOH A 6 206 9 HOH HOH . M 4 HOH A 7 207 24 HOH HOH . M 4 HOH A 8 208 46 HOH HOH . M 4 HOH A 9 209 1 HOH HOH . M 4 HOH A 10 210 4 HOH HOH . M 4 HOH A 11 211 19 HOH HOH . M 4 HOH A 12 212 51 HOH HOH . M 4 HOH A 13 213 18 HOH HOH . M 4 HOH A 14 214 10 HOH HOH . M 4 HOH A 15 215 30 HOH HOH . M 4 HOH A 16 216 8 HOH HOH . M 4 HOH A 17 217 5 HOH HOH . M 4 HOH A 18 218 39 HOH HOH . M 4 HOH A 19 219 44 HOH HOH . M 4 HOH A 20 220 27 HOH HOH . M 4 HOH A 21 221 37 HOH HOH . M 4 HOH A 22 222 32 HOH HOH . M 4 HOH A 23 223 22 HOH HOH . M 4 HOH A 24 224 42 HOH HOH . M 4 HOH A 25 225 40 HOH HOH . N 4 HOH B 1 201 52 HOH HOH . N 4 HOH B 2 202 15 HOH HOH . N 4 HOH B 3 203 36 HOH HOH . N 4 HOH B 4 204 11 HOH HOH . N 4 HOH B 5 205 14 HOH HOH . N 4 HOH B 6 206 41 HOH HOH . N 4 HOH B 7 207 7 HOH HOH . N 4 HOH B 8 208 17 HOH HOH . N 4 HOH B 9 209 28 HOH HOH . N 4 HOH B 10 210 2 HOH HOH . N 4 HOH B 11 211 12 HOH HOH . N 4 HOH B 12 212 6 HOH HOH . N 4 HOH B 13 213 20 HOH HOH . N 4 HOH B 14 214 26 HOH HOH . N 4 HOH B 15 215 50 HOH HOH . N 4 HOH B 16 216 29 HOH HOH . N 4 HOH B 17 217 35 HOH HOH . N 4 HOH B 18 218 3 HOH HOH . N 4 HOH B 19 219 34 HOH HOH . N 4 HOH B 20 220 31 HOH HOH . N 4 HOH B 21 221 23 HOH HOH . N 4 HOH B 22 222 47 HOH HOH . N 4 HOH B 23 223 43 HOH HOH . N 4 HOH B 24 224 38 HOH HOH . N 4 HOH B 25 225 48 HOH HOH . N 4 HOH B 26 226 25 HOH HOH . N 4 HOH B 27 227 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TLA . . . I 3 28.174 30.864 15.615 1 37.43 -1 O1 TLA 101 B 1 HETATM 2 O O11 TLA . . . I 3 26.8 30.039 17.161 1 33.47 ? O11 TLA 101 B 1 HETATM 3 C C1 TLA . . . I 3 27.179 30.191 15.971 1 40.37 ? C1 TLA 101 B 1 HETATM 4 C C2 TLA . . . I 3 26.385 29.526 14.894 1 50.15 ? C2 TLA 101 B 1 HETATM 5 O O2 TLA . . . I 3 25.05 29.335 15.38 1 48.79 ? O2 TLA 101 B 1 HETATM 6 C C3 TLA . . . I 3 27.009 28.17 14.576 1 51.11 ? C3 TLA 101 B 1 HETATM 7 O O3 TLA . . . I 3 27.01 27.32 15.732 1 44.24 ? O3 TLA 101 B 1 HETATM 8 C C4 TLA . . . I 3 26.178 27.528 13.503 1 47.35 ? C4 TLA 101 B 1 HETATM 9 O O4 TLA . . . I 3 25.925 28.225 12.506 1 43.46 ? O4 TLA 101 B 1 HETATM 10 O O41 TLA . . . I 3 25.79 26.344 13.649 1 44.79 ? O41 TLA 101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #