data_5TFT
#
_model_server_result.job_id            unuQn6YC8PhSgXTcyTgDgA 
_model_server_result.datetime_utc      '2024-12-01 18:05:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tft 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":603}' 
#
_entry.id    5TFT 
#
_exptl.entry_id    5TFT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.391 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-4-[2,4-difluoro-5-({[1-(trifluoromethyl)cyclopropyl]amino}methyl)phenyl]-4-methyl-5,6-dihydro-4H-1,3-thiazin-2-amine 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TFT 
_cell.length_a            57.474 
_cell.length_b            192.563 
_cell.length_c            247.901 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TFT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,R 1 1 
B,I,J,K,S 2 1 
C,L,M,N,T 3 1 
D,O,P,Q,U 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
? 4 N N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 236 A HIS 258 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc2 A OD2 ASP 248 A ASP 270 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc3 A OE2 GLU 251 A GLU 273 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc4 A OE1 GLU 265 A GLU 287 1_555 F ZN ZN . A ZN 602 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc5 A OE2 GLU 265 A GLU 287 1_555 F ZN ZN . A ZN 602 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc6 A OD2 ASP 400 A ASP 422 1_555 G ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc7 A ND1 HIS 404 A HIS 426 1_555 G ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc8 A SG CYS 421 A CYS 443 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc9 G ZN ZN . A ZN 603 1_555 B OD2 ASP 400 B ASP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc10 G ZN ZN . A ZN 603 1_555 B ND1 HIS 404 B HIS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc11 B NE2 HIS 236 B HIS 258 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
metalc ? metalc12 B OD2 ASP 248 B ASP 270 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc13 B OE2 GLU 251 B GLU 273 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc14 B OE2 GLU 265 B GLU 287 1_555 M ZN ZN . C ZN 602 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc15 B SG CYS 421 B CYS 443 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc16 J ZN ZN . B ZN 602 3_444 C OE1 GLU 265 C GLU 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc17 J ZN ZN . B ZN 602 3_444 C OE2 GLU 265 C GLU 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc18 C NE2 HIS 236 C HIS 258 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc19 C OD2 ASP 248 C ASP 270 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc20 C OE2 GLU 251 C GLU 273 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc21 C SG CYS 421 C CYS 443 1_555 L FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc22 D NE2 HIS 236 D HIS 258 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc23 D OD2 ASP 248 D ASP 270 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc24 D OE2 GLU 251 D GLU 273 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc25 D OE2 GLU 265 D GLU 287 1_555 P ZN ZN . D ZN 602 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc26 D SG CYS 421 D CYS 443 1_555 O FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
#
_chem_comp.formula           'C16 H18 F5 N3 S' 
_chem_comp.formula_weight    379.391 
_chem_comp.id                P6U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-4-[2,4-difluoro-5-({[1-(trifluoromethyl)cyclopropyl]amino}methyl)phenyl]-4-methyl-5,6-dihydro-4H-1,3-thiazin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 P6U sing 319 n n 
C2 C3 P6U sing 320 n n 
C2 N1 P6U sing 321 n n 
C2 C6 P6U sing 322 n n 
C3 C4 P6U sing 323 n n 
C4 S1 P6U sing 324 n n 
S1 C5 P6U sing 325 n n 
C5 N1 P6U doub 326 n n 
C5 N2 P6U sing 327 n n 
C6 C7 P6U doub 328 n y 
C6 C11 P6U sing 329 n y 
C7 C8 P6U sing 330 n y 
C8 C9 P6U doub 331 n y 
C8 C12 P6U sing 332 n n 
C9 C10 P6U sing 333 n y 
C9 F2 P6U sing 334 n n 
C10 C11 P6U doub 335 n y 
C11 F1 P6U sing 336 n n 
C12 N3 P6U sing 337 n n 
N3 C13 P6U sing 338 n n 
C13 C14 P6U sing 339 n n 
C13 C15 P6U sing 340 n n 
C13 C16 P6U sing 341 n n 
C14 C15 P6U sing 342 n n 
C16 F3 P6U sing 343 n n 
C16 F4 P6U sing 344 n n 
C16 F5 P6U sing 345 n n 
C1 H1 P6U sing 346 n n 
C1 H3 P6U sing 347 n n 
C1 H2 P6U sing 348 n n 
C3 H5 P6U sing 349 n n 
C3 H4 P6U sing 350 n n 
C4 H7 P6U sing 351 n n 
C4 H6 P6U sing 352 n n 
N2 H9 P6U sing 353 n n 
N2 H8 P6U sing 354 n n 
C7 H10 P6U sing 355 n n 
C10 H11 P6U sing 356 n n 
C12 H13 P6U sing 357 n n 
C12 H12 P6U sing 358 n n 
N3 H14 P6U sing 359 n n 
C14 H15 P6U sing 360 n n 
C14 H16 P6U sing 361 n n 
C15 H17 P6U sing 362 n n 
C15 H18 P6U sing 363 n n 
#
_atom_sites.entry_id                     5TFT 
_atom_sites.fract_transf_matrix[1][1]    0.017399 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 601 HEM HEM . 
F 3 ZN A 1 602 603 ZN ZN . 
G 3 ZN A 1 603 604 ZN ZN . 
H 4 P6U A 1 604 610 P6U P6U . 
I 2 HEM B 1 601 601 HEM HEM . 
J 3 ZN B 1 602 603 ZN ZN . 
K 4 P6U B 1 603 610 P6U P6U . 
L 2 HEM C 1 601 601 HEM HEM . 
M 3 ZN C 1 602 603 ZN ZN . 
N 4 P6U C 1 603 610 P6U P6U . 
O 2 HEM D 1 601 601 HEM HEM . 
P 3 ZN D 1 602 603 ZN ZN . 
Q 4 P6U D 1 603 610 P6U P6U . 
R 5 HOH A 1 701 28 HOH HOH . 
R 5 HOH A 2 702 7 HOH HOH . 
R 5 HOH A 3 703 25 HOH HOH . 
R 5 HOH A 4 704 30 HOH HOH . 
R 5 HOH A 5 705 38 HOH HOH . 
R 5 HOH A 6 706 31 HOH HOH . 
R 5 HOH A 7 707 1 HOH HOH . 
R 5 HOH A 8 708 32 HOH HOH . 
R 5 HOH A 9 709 3 HOH HOH . 
R 5 HOH A 10 710 9 HOH HOH . 
R 5 HOH A 11 711 34 HOH HOH . 
R 5 HOH A 12 712 39 HOH HOH . 
R 5 HOH A 13 713 41 HOH HOH . 
S 5 HOH B 1 701 15 HOH HOH . 
S 5 HOH B 2 702 27 HOH HOH . 
S 5 HOH B 3 703 8 HOH HOH . 
S 5 HOH B 4 704 11 HOH HOH . 
S 5 HOH B 5 705 23 HOH HOH . 
S 5 HOH B 6 706 10 HOH HOH . 
S 5 HOH B 7 707 13 HOH HOH . 
S 5 HOH B 8 708 21 HOH HOH . 
S 5 HOH B 9 709 5 HOH HOH . 
S 5 HOH B 10 710 37 HOH HOH . 
S 5 HOH B 11 711 2 HOH HOH . 
S 5 HOH B 12 712 40 HOH HOH . 
T 5 HOH C 1 701 22 HOH HOH . 
T 5 HOH C 2 702 18 HOH HOH . 
T 5 HOH C 3 703 4 HOH HOH . 
T 5 HOH C 4 704 35 HOH HOH . 
T 5 HOH C 5 705 29 HOH HOH . 
T 5 HOH C 6 706 6 HOH HOH . 
T 5 HOH C 7 707 14 HOH HOH . 
T 5 HOH C 8 708 26 HOH HOH . 
T 5 HOH C 9 709 20 HOH HOH . 
T 5 HOH C 10 710 42 HOH HOH . 
U 5 HOH D 1 701 36 HOH HOH . 
U 5 HOH D 2 702 19 HOH HOH . 
U 5 HOH D 3 703 12 HOH HOH . 
U 5 HOH D 4 704 17 HOH HOH . 
U 5 HOH D 5 705 16 HOH HOH . 
U 5 HOH D 6 706 33 HOH HOH . 
U 5 HOH D 7 707 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P6U . . . K 4 -19.733 26.367 -66.03 1 54.97 ? C1 P6U 603 B 1 
HETATM 2 C C2 P6U . . . K 4 -19.978 27.872 -65.975 1 64.65 ? C2 P6U 603 B 1 
HETATM 3 C C3 P6U . . . K 4 -19.639 28.42 -64.573 1 62.85 ? C3 P6U 603 B 1 
HETATM 4 C C4 P6U . . . K 4 -19.836 29.921 -64.465 1 57.48 ? C4 P6U 603 B 1 
HETATM 5 S S1 P6U . . . K 4 -18.841 30.849 -65.635 1 61.67 ? S1 P6U 603 B 1 
HETATM 6 C C5 P6U . . . K 4 -18.68 29.685 -66.935 1 58.11 ? C5 P6U 603 B 1 
HETATM 7 N N1 P6U . . . K 4 -19.16 28.517 -67.017 1 67.24 ? N1 P6U 603 B 1 
HETATM 8 N N2 P6U . . . K 4 -17.953 30.166 -67.949 1 51.84 ? N2 P6U 603 B 1 
HETATM 9 C C6 P6U . . . K 4 -21.436 28.196 -66.294 1 72.18 ? C6 P6U 603 B 1 
HETATM 10 C C7 P6U . . . K 4 -21.732 29.057 -67.345 1 71.09 ? C7 P6U 603 B 1 
HETATM 11 C C8 P6U . . . K 4 -23.036 29.388 -67.699 1 73.84 ? C8 P6U 603 B 1 
HETATM 12 C C9 P6U . . . K 4 -24.051 28.804 -66.972 1 78.44 ? C9 P6U 603 B 1 
HETATM 13 C C10 P6U . . . K 4 -23.83 27.949 -65.925 1 80.75 ? C10 P6U 603 B 1 
HETATM 14 C C11 P6U . . . K 4 -22.525 27.673 -65.605 1 77.76 ? C11 P6U 603 B 1 
HETATM 15 F F1 P6U . . . K 4 -22.287 26.867 -64.546 1 78.67 ? F1 P6U 603 B 1 
HETATM 16 F F2 P6U . . . K 4 -25.325 29.097 -67.316 1 64.28 ? F2 P6U 603 B 1 
HETATM 17 C C12 P6U . . . K 4 -23.32 30.388 -68.795 1 72.22 ? C12 P6U 603 B 1 
HETATM 18 N N3 P6U . . . K 4 -23.349 31.795 -68.381 1 83.97 ? N3 P6U 603 B 1 
HETATM 19 C C13 P6U . . . K 4 -23.067 32.825 -69.419 1 79.42 ? C13 P6U 603 B 1 
HETATM 20 C C14 P6U . . . K 4 -23.766 34.143 -69.398 1 62.12 ? C14 P6U 603 B 1 
HETATM 21 C C15 P6U . . . K 4 -24.025 33.167 -70.511 1 70.52 ? C15 P6U 603 B 1 
HETATM 22 C C16 P6U . . . K 4 -21.58 32.828 -69.686 1 86.2 ? C16 P6U 603 B 1 
HETATM 23 F F3 P6U . . . K 4 -21.164 33.995 -70.166 1 84.4 ? F3 P6U 603 B 1 
HETATM 24 F F4 P6U . . . K 4 -20.875 32.593 -68.584 1 74.79 ? F4 P6U 603 B 1 
HETATM 25 F F5 P6U . . . K 4 -21.23 31.901 -70.572 1 93 ? F5 P6U 603 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#