data_5TFU # _model_server_result.job_id gLnoXkOIRP5KULYEtoSd0g _model_server_result.datetime_utc '2024-12-21 15:56:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":602}' # _entry.id 5TFU # _exptl.entry_id 5TFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TFU _cell.length_a 57.105 _cell.length_b 191.756 _cell.length_c 246.838 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,R 1 1 B,I,J,K,S 2 1 C,L,M,N,T 3 1 D,O,P,Q,U 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 236 A HIS 258 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 A OD2 ASP 248 A ASP 270 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A OE2 GLU 251 A GLU 273 1_555 F ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc4 A OE1 GLU 265 A GLU 287 1_555 F ZN ZN . A ZN 602 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 A OE2 GLU 265 A GLU 287 1_555 F ZN ZN . A ZN 602 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 A OD2 ASP 400 A ASP 422 1_555 G ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc7 A ND1 HIS 404 A HIS 426 1_555 G ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc8 A SG CYS 421 A CYS 443 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc9 G ZN ZN . A ZN 603 1_555 B OD2 ASP 400 B ASP 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc10 G ZN ZN . A ZN 603 1_555 B ND1 HIS 404 B HIS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc11 B NE2 HIS 236 B HIS 258 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc12 B OD2 ASP 248 B ASP 270 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc13 B OE2 GLU 251 B GLU 273 1_555 J ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc14 B OE2 GLU 265 B GLU 287 1_555 M ZN ZN . C ZN 602 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc15 B SG CYS 421 B CYS 443 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc16 J ZN ZN . B ZN 602 3_444 C OE1 GLU 265 C GLU 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc17 J ZN ZN . B ZN 602 3_444 C OE2 GLU 265 C GLU 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc18 C NE2 HIS 236 C HIS 258 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc19 C OD1 ASP 248 C ASP 270 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc20 C OE2 GLU 251 C GLU 273 1_555 M ZN ZN . C ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc21 C SG CYS 421 C CYS 443 1_555 L FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc22 D NE2 HIS 236 D HIS 258 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc23 D OD2 ASP 248 D ASP 270 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc24 D OE2 GLU 251 D GLU 273 1_555 P ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc25 D OE2 GLU 265 D GLU 287 1_555 P ZN ZN . D ZN 602 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc26 D SG CYS 421 D CYS 443 1_555 O FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TFU _atom_sites.fract_transf_matrix[1][1] 0.017512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 ZN A 1 602 603 ZN ZN . G 3 ZN A 1 603 606 ZN ZN . H 4 P6M A 1 604 610 P6M P6M . I 2 HEM B 1 601 601 HEM HEM . J 3 ZN B 1 602 603 ZN ZN . K 4 P6M B 1 603 610 P6M P6M . L 2 HEM C 1 601 601 HEM HEM . M 3 ZN C 1 602 603 ZN ZN . N 4 P6M C 1 603 610 P6M P6M . O 2 HEM D 1 601 601 HEM HEM . P 3 ZN D 1 602 603 ZN ZN . Q 4 P6M D 1 603 610 P6M P6M . R 5 HOH A 1 701 737 HOH HOH . R 5 HOH A 2 702 703 HOH HOH . R 5 HOH A 3 703 715 HOH HOH . R 5 HOH A 4 704 709 HOH HOH . R 5 HOH A 5 705 722 HOH HOH . R 5 HOH A 6 706 754 HOH HOH . R 5 HOH A 7 707 750 HOH HOH . R 5 HOH A 8 708 701 HOH HOH . R 5 HOH A 9 709 748 HOH HOH . R 5 HOH A 10 710 723 HOH HOH . R 5 HOH A 11 711 721 HOH HOH . R 5 HOH A 12 712 706 HOH HOH . R 5 HOH A 13 713 702 HOH HOH . R 5 HOH A 14 714 720 HOH HOH . R 5 HOH A 15 715 755 HOH HOH . R 5 HOH A 16 716 763 HOH HOH . R 5 HOH A 17 717 707 HOH HOH . R 5 HOH A 18 718 705 HOH HOH . R 5 HOH A 19 719 729 HOH HOH . R 5 HOH A 20 720 760 HOH HOH . R 5 HOH A 21 721 761 HOH HOH . R 5 HOH A 22 722 727 HOH HOH . R 5 HOH A 23 723 716 HOH HOH . R 5 HOH A 24 724 738 HOH HOH . R 5 HOH A 25 725 746 HOH HOH . R 5 HOH A 26 726 705 HOH HOH . R 5 HOH A 27 727 718 HOH HOH . R 5 HOH A 28 728 743 HOH HOH . R 5 HOH A 29 729 758 HOH HOH . R 5 HOH A 30 730 704 HOH HOH . R 5 HOH A 31 731 751 HOH HOH . R 5 HOH A 32 732 762 HOH HOH . R 5 HOH A 33 733 740 HOH HOH . R 5 HOH A 34 734 744 HOH HOH . R 5 HOH A 35 735 711 HOH HOH . S 5 HOH B 1 701 708 HOH HOH . S 5 HOH B 2 702 707 HOH HOH . S 5 HOH B 3 703 709 HOH HOH . S 5 HOH B 4 704 730 HOH HOH . S 5 HOH B 5 705 716 HOH HOH . S 5 HOH B 6 706 718 HOH HOH . S 5 HOH B 7 707 702 HOH HOH . S 5 HOH B 8 708 717 HOH HOH . S 5 HOH B 9 709 726 HOH HOH . S 5 HOH B 10 710 703 HOH HOH . S 5 HOH B 11 711 735 HOH HOH . S 5 HOH B 12 712 704 HOH HOH . S 5 HOH B 13 713 706 HOH HOH . S 5 HOH B 14 714 712 HOH HOH . S 5 HOH B 15 715 710 HOH HOH . S 5 HOH B 16 716 727 HOH HOH . S 5 HOH B 17 717 731 HOH HOH . S 5 HOH B 18 718 720 HOH HOH . S 5 HOH B 19 719 714 HOH HOH . S 5 HOH B 20 720 711 HOH HOH . S 5 HOH B 21 721 713 HOH HOH . S 5 HOH B 22 722 733 HOH HOH . S 5 HOH B 23 723 724 HOH HOH . S 5 HOH B 24 724 732 HOH HOH . S 5 HOH B 25 725 701 HOH HOH . S 5 HOH B 26 726 738 HOH HOH . S 5 HOH B 27 727 727 HOH HOH . S 5 HOH B 28 728 715 HOH HOH . S 5 HOH B 29 729 749 HOH HOH . T 5 HOH C 1 701 709 HOH HOH . T 5 HOH C 2 702 718 HOH HOH . T 5 HOH C 3 703 717 HOH HOH . T 5 HOH C 4 704 714 HOH HOH . T 5 HOH C 5 705 720 HOH HOH . T 5 HOH C 6 706 716 HOH HOH . T 5 HOH C 7 707 736 HOH HOH . T 5 HOH C 8 708 719 HOH HOH . T 5 HOH C 9 709 723 HOH HOH . T 5 HOH C 10 710 737 HOH HOH . T 5 HOH C 11 711 713 HOH HOH . T 5 HOH C 12 712 702 HOH HOH . T 5 HOH C 13 713 724 HOH HOH . T 5 HOH C 14 714 734 HOH HOH . T 5 HOH C 15 715 710 HOH HOH . T 5 HOH C 16 716 743 HOH HOH . T 5 HOH C 17 717 722 HOH HOH . T 5 HOH C 18 718 740 HOH HOH . T 5 HOH C 19 719 728 HOH HOH . T 5 HOH C 20 720 733 HOH HOH . T 5 HOH C 21 721 748 HOH HOH . T 5 HOH C 22 722 704 HOH HOH . T 5 HOH C 23 723 708 HOH HOH . T 5 HOH C 24 724 715 HOH HOH . T 5 HOH C 25 725 730 HOH HOH . T 5 HOH C 26 726 731 HOH HOH . T 5 HOH C 27 727 741 HOH HOH . T 5 HOH C 28 728 738 HOH HOH . T 5 HOH C 29 729 706 HOH HOH . U 5 HOH D 1 701 715 HOH HOH . U 5 HOH D 2 702 708 HOH HOH . U 5 HOH D 3 703 746 HOH HOH . U 5 HOH D 4 704 736 HOH HOH . U 5 HOH D 5 705 713 HOH HOH . U 5 HOH D 6 706 747 HOH HOH . U 5 HOH D 7 707 714 HOH HOH . U 5 HOH D 8 708 714 HOH HOH . U 5 HOH D 9 709 717 HOH HOH . U 5 HOH D 10 710 723 HOH HOH . U 5 HOH D 11 711 710 HOH HOH . U 5 HOH D 12 712 735 HOH HOH . U 5 HOH D 13 713 706 HOH HOH . U 5 HOH D 14 714 737 HOH HOH . U 5 HOH D 15 715 707 HOH HOH . U 5 HOH D 16 716 741 HOH HOH . U 5 HOH D 17 717 702 HOH HOH . U 5 HOH D 18 718 742 HOH HOH . U 5 HOH D 19 719 745 HOH HOH . U 5 HOH D 20 720 720 HOH HOH . U 5 HOH D 21 721 718 HOH HOH . U 5 HOH D 22 722 709 HOH HOH . U 5 HOH D 23 723 705 HOH HOH . U 5 HOH D 24 724 732 HOH HOH . U 5 HOH D 25 725 712 HOH HOH . U 5 HOH D 26 726 727 HOH HOH . U 5 HOH D 27 727 756 HOH HOH . U 5 HOH D 28 728 726 HOH HOH . U 5 HOH D 29 729 722 HOH HOH . U 5 HOH D 30 730 757 HOH HOH . U 5 HOH D 31 731 760 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.678 _atom_site.Cartn_y -46.037 _atom_site.Cartn_z -5.252 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.15 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #