data_5TFW
#
_model_server_result.job_id            9fLogN0bd6qtcHe-m4xcow 
_model_server_result.datetime_utc      '2024-11-30 19:05:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tfw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    5TFW 
#
_exptl.entry_id    5TFW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.79 
_cell.angle_gamma         90 
_cell.entry_id            5TFW 
_cell.length_a            213.49 
_cell.length_b            63.41 
_cell.length_c            53.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TFW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 158 H CYS 140 1_555 A SG CYS 214 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf4 B SG CYS 137 L CYS 135 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5TFW 
_atom_sites.fract_transf_matrix[1][1]    0.004684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000475 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01577 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018658 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 PEG H 1 301 1 PEG PEG . 
E 5 EDO L 1 301 1 EDO EDO . 
F 6 HOH H 1 401 19 HOH HOH . 
F 6 HOH H 2 402 62 HOH HOH . 
F 6 HOH H 3 403 161 HOH HOH . 
F 6 HOH H 4 404 136 HOH HOH . 
F 6 HOH H 5 405 44 HOH HOH . 
F 6 HOH H 6 406 90 HOH HOH . 
F 6 HOH H 7 407 167 HOH HOH . 
F 6 HOH H 8 408 7 HOH HOH . 
F 6 HOH H 9 409 123 HOH HOH . 
F 6 HOH H 10 410 32 HOH HOH . 
F 6 HOH H 11 411 55 HOH HOH . 
F 6 HOH H 12 412 2 HOH HOH . 
F 6 HOH H 13 413 127 HOH HOH . 
F 6 HOH H 14 414 60 HOH HOH . 
F 6 HOH H 15 415 49 HOH HOH . 
F 6 HOH H 16 416 48 HOH HOH . 
F 6 HOH H 17 417 84 HOH HOH . 
F 6 HOH H 18 418 89 HOH HOH . 
F 6 HOH H 19 419 181 HOH HOH . 
F 6 HOH H 20 420 147 HOH HOH . 
F 6 HOH H 21 421 208 HOH HOH . 
F 6 HOH H 22 422 51 HOH HOH . 
F 6 HOH H 23 423 144 HOH HOH . 
F 6 HOH H 24 424 91 HOH HOH . 
F 6 HOH H 25 425 77 HOH HOH . 
F 6 HOH H 26 426 221 HOH HOH . 
F 6 HOH H 27 427 130 HOH HOH . 
F 6 HOH H 28 428 4 HOH HOH . 
F 6 HOH H 29 429 31 HOH HOH . 
F 6 HOH H 30 430 50 HOH HOH . 
F 6 HOH H 31 431 6 HOH HOH . 
F 6 HOH H 32 432 29 HOH HOH . 
F 6 HOH H 33 433 13 HOH HOH . 
F 6 HOH H 34 434 160 HOH HOH . 
F 6 HOH H 35 435 162 HOH HOH . 
F 6 HOH H 36 436 111 HOH HOH . 
F 6 HOH H 37 437 135 HOH HOH . 
F 6 HOH H 38 438 206 HOH HOH . 
F 6 HOH H 39 439 73 HOH HOH . 
F 6 HOH H 40 440 120 HOH HOH . 
F 6 HOH H 41 441 45 HOH HOH . 
F 6 HOH H 42 442 33 HOH HOH . 
F 6 HOH H 43 443 121 HOH HOH . 
F 6 HOH H 44 444 76 HOH HOH . 
F 6 HOH H 45 445 61 HOH HOH . 
F 6 HOH H 46 446 69 HOH HOH . 
F 6 HOH H 47 447 138 HOH HOH . 
F 6 HOH H 48 448 57 HOH HOH . 
F 6 HOH H 49 449 1 HOH HOH . 
F 6 HOH H 50 450 205 HOH HOH . 
F 6 HOH H 51 451 35 HOH HOH . 
F 6 HOH H 52 452 47 HOH HOH . 
F 6 HOH H 53 453 86 HOH HOH . 
F 6 HOH H 54 454 115 HOH HOH . 
F 6 HOH H 55 455 5 HOH HOH . 
F 6 HOH H 56 456 52 HOH HOH . 
F 6 HOH H 57 457 165 HOH HOH . 
F 6 HOH H 58 458 34 HOH HOH . 
F 6 HOH H 59 459 42 HOH HOH . 
F 6 HOH H 60 460 75 HOH HOH . 
F 6 HOH H 61 461 15 HOH HOH . 
F 6 HOH H 62 462 112 HOH HOH . 
F 6 HOH H 63 463 213 HOH HOH . 
F 6 HOH H 64 464 24 HOH HOH . 
F 6 HOH H 65 465 201 HOH HOH . 
F 6 HOH H 66 466 202 HOH HOH . 
F 6 HOH H 67 467 53 HOH HOH . 
F 6 HOH H 68 468 114 HOH HOH . 
F 6 HOH H 69 469 188 HOH HOH . 
F 6 HOH H 70 470 110 HOH HOH . 
F 6 HOH H 71 471 219 HOH HOH . 
F 6 HOH H 72 472 124 HOH HOH . 
F 6 HOH H 73 473 128 HOH HOH . 
F 6 HOH H 74 474 66 HOH HOH . 
F 6 HOH H 75 475 93 HOH HOH . 
F 6 HOH H 76 476 80 HOH HOH . 
F 6 HOH H 77 477 41 HOH HOH . 
F 6 HOH H 78 478 125 HOH HOH . 
F 6 HOH H 79 479 97 HOH HOH . 
F 6 HOH H 80 480 207 HOH HOH . 
F 6 HOH H 81 481 113 HOH HOH . 
F 6 HOH H 82 482 184 HOH HOH . 
F 6 HOH H 83 483 133 HOH HOH . 
F 6 HOH H 84 484 117 HOH HOH . 
F 6 HOH H 85 485 3 HOH HOH . 
F 6 HOH H 86 486 94 HOH HOH . 
F 6 HOH H 87 487 12 HOH HOH . 
F 6 HOH H 88 488 106 HOH HOH . 
F 6 HOH H 89 489 98 HOH HOH . 
F 6 HOH H 90 490 141 HOH HOH . 
F 6 HOH H 91 491 63 HOH HOH . 
F 6 HOH H 92 492 192 HOH HOH . 
F 6 HOH H 93 493 216 HOH HOH . 
F 6 HOH H 94 494 214 HOH HOH . 
F 6 HOH H 95 495 191 HOH HOH . 
F 6 HOH H 96 496 71 HOH HOH . 
F 6 HOH H 97 497 211 HOH HOH . 
F 6 HOH H 98 498 78 HOH HOH . 
F 6 HOH H 99 499 204 HOH HOH . 
F 6 HOH H 100 500 182 HOH HOH . 
F 6 HOH H 101 501 25 HOH HOH . 
F 6 HOH H 102 502 164 HOH HOH . 
F 6 HOH H 103 503 132 HOH HOH . 
F 6 HOH H 104 504 187 HOH HOH . 
F 6 HOH H 105 505 212 HOH HOH . 
F 6 HOH H 106 506 148 HOH HOH . 
F 6 HOH H 107 507 18 HOH HOH . 
F 6 HOH H 108 508 183 HOH HOH . 
F 6 HOH H 109 509 137 HOH HOH . 
F 6 HOH H 110 510 186 HOH HOH . 
F 6 HOH H 111 511 197 HOH HOH . 
F 6 HOH H 112 512 163 HOH HOH . 
F 6 HOH H 113 513 196 HOH HOH . 
F 6 HOH H 114 514 210 HOH HOH . 
F 6 HOH H 115 515 180 HOH HOH . 
F 6 HOH H 116 516 179 HOH HOH . 
F 6 HOH H 117 517 142 HOH HOH . 
F 6 HOH H 118 518 215 HOH HOH . 
F 6 HOH H 119 519 159 HOH HOH . 
F 6 HOH H 120 520 193 HOH HOH . 
F 6 HOH H 121 521 65 HOH HOH . 
F 6 HOH H 122 522 190 HOH HOH . 
F 6 HOH H 123 523 143 HOH HOH . 
F 6 HOH H 124 524 185 HOH HOH . 
F 6 HOH H 125 525 119 HOH HOH . 
F 6 HOH H 126 526 122 HOH HOH . 
G 6 HOH L 1 401 231 HOH HOH . 
G 6 HOH L 2 402 103 HOH HOH . 
G 6 HOH L 3 403 227 HOH HOH . 
G 6 HOH L 4 404 229 HOH HOH . 
G 6 HOH L 5 405 166 HOH HOH . 
G 6 HOH L 6 406 217 HOH HOH . 
G 6 HOH L 7 407 54 HOH HOH . 
G 6 HOH L 8 408 28 HOH HOH . 
G 6 HOH L 9 409 150 HOH HOH . 
G 6 HOH L 10 410 22 HOH HOH . 
G 6 HOH L 11 411 21 HOH HOH . 
G 6 HOH L 12 412 235 HOH HOH . 
G 6 HOH L 13 413 9 HOH HOH . 
G 6 HOH L 14 414 171 HOH HOH . 
G 6 HOH L 15 415 87 HOH HOH . 
G 6 HOH L 16 416 100 HOH HOH . 
G 6 HOH L 17 417 95 HOH HOH . 
G 6 HOH L 18 418 173 HOH HOH . 
G 6 HOH L 19 419 238 HOH HOH . 
G 6 HOH L 20 420 58 HOH HOH . 
G 6 HOH L 21 421 170 HOH HOH . 
G 6 HOH L 22 422 96 HOH HOH . 
G 6 HOH L 23 423 83 HOH HOH . 
G 6 HOH L 24 424 43 HOH HOH . 
G 6 HOH L 25 425 232 HOH HOH . 
G 6 HOH L 26 426 168 HOH HOH . 
G 6 HOH L 27 427 30 HOH HOH . 
G 6 HOH L 28 428 224 HOH HOH . 
G 6 HOH L 29 429 36 HOH HOH . 
G 6 HOH L 30 430 74 HOH HOH . 
G 6 HOH L 31 431 40 HOH HOH . 
G 6 HOH L 32 432 234 HOH HOH . 
G 6 HOH L 33 433 72 HOH HOH . 
G 6 HOH L 34 434 10 HOH HOH . 
G 6 HOH L 35 435 23 HOH HOH . 
G 6 HOH L 36 436 237 HOH HOH . 
G 6 HOH L 37 437 116 HOH HOH . 
G 6 HOH L 38 438 11 HOH HOH . 
G 6 HOH L 39 439 155 HOH HOH . 
G 6 HOH L 40 440 85 HOH HOH . 
G 6 HOH L 41 441 46 HOH HOH . 
G 6 HOH L 42 442 172 HOH HOH . 
G 6 HOH L 43 443 37 HOH HOH . 
G 6 HOH L 44 444 20 HOH HOH . 
G 6 HOH L 45 445 17 HOH HOH . 
G 6 HOH L 46 446 8 HOH HOH . 
G 6 HOH L 47 447 68 HOH HOH . 
G 6 HOH L 48 448 39 HOH HOH . 
G 6 HOH L 49 449 156 HOH HOH . 
G 6 HOH L 50 450 102 HOH HOH . 
G 6 HOH L 51 451 236 HOH HOH . 
G 6 HOH L 52 452 233 HOH HOH . 
G 6 HOH L 53 453 107 HOH HOH . 
G 6 HOH L 54 454 26 HOH HOH . 
G 6 HOH L 55 455 56 HOH HOH . 
G 6 HOH L 56 456 195 HOH HOH . 
G 6 HOH L 57 457 149 HOH HOH . 
G 6 HOH L 58 458 129 HOH HOH . 
G 6 HOH L 59 459 105 HOH HOH . 
G 6 HOH L 60 460 64 HOH HOH . 
G 6 HOH L 61 461 230 HOH HOH . 
G 6 HOH L 62 462 244 HOH HOH . 
G 6 HOH L 63 463 16 HOH HOH . 
G 6 HOH L 64 464 222 HOH HOH . 
G 6 HOH L 65 465 225 HOH HOH . 
G 6 HOH L 66 466 27 HOH HOH . 
G 6 HOH L 67 467 228 HOH HOH . 
G 6 HOH L 68 468 109 HOH HOH . 
G 6 HOH L 69 469 140 HOH HOH . 
G 6 HOH L 70 470 131 HOH HOH . 
G 6 HOH L 71 471 169 HOH HOH . 
G 6 HOH L 72 472 203 HOH HOH . 
G 6 HOH L 73 473 194 HOH HOH . 
G 6 HOH L 74 474 223 HOH HOH . 
G 6 HOH L 75 475 218 HOH HOH . 
G 6 HOH L 76 476 59 HOH HOH . 
G 6 HOH L 77 477 99 HOH HOH . 
G 6 HOH L 78 478 134 HOH HOH . 
G 6 HOH L 79 479 189 HOH HOH . 
G 6 HOH L 80 480 153 HOH HOH . 
G 6 HOH L 81 481 226 HOH HOH . 
G 6 HOH L 82 482 38 HOH HOH . 
G 6 HOH L 83 483 151 HOH HOH . 
H 6 HOH O 1 201 154 HOH HOH . 
H 6 HOH O 2 202 240 HOH HOH . 
H 6 HOH O 3 203 79 HOH HOH . 
H 6 HOH O 4 204 92 HOH HOH . 
H 6 HOH O 5 205 126 HOH HOH . 
H 6 HOH O 6 206 67 HOH HOH . 
H 6 HOH O 7 207 241 HOH HOH . 
H 6 HOH O 8 208 14 HOH HOH . 
H 6 HOH O 9 209 175 HOH HOH . 
H 6 HOH O 10 210 198 HOH HOH . 
H 6 HOH O 11 211 176 HOH HOH . 
H 6 HOH O 12 212 88 HOH HOH . 
H 6 HOH O 13 213 200 HOH HOH . 
H 6 HOH O 14 214 70 HOH HOH . 
H 6 HOH O 15 215 82 HOH HOH . 
H 6 HOH O 16 216 174 HOH HOH . 
H 6 HOH O 17 217 178 HOH HOH . 
H 6 HOH O 18 218 242 HOH HOH . 
H 6 HOH O 19 219 101 HOH HOH . 
H 6 HOH O 20 220 239 HOH HOH . 
H 6 HOH O 21 221 177 HOH HOH . 
H 6 HOH O 22 222 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 5 -34.109 29.67 -6.645 1 43.18 ? C1 EDO 301 L 1 
HETATM 2 O O1 EDO . . . E 5 -34.336 28.308 -6.953 1 53.54 ? O1 EDO 301 L 1 
HETATM 3 C C2 EDO . . . E 5 -33.353 30.424 -7.699 1 44.48 ? C2 EDO 301 L 1 
HETATM 4 O O2 EDO . . . E 5 -33.444 31.769 -7.318 1 41.62 ? O2 EDO 301 L 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           532 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#