data_5TFX # _model_server_result.job_id wCo1eme8n01KkWpHDl_5Jw _model_server_result.datetime_utc '2024-10-18 16:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5TFX # _exptl.entry_id 5TFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.58 _cell.angle_gamma 90 _cell.entry_id 5TFX _cell.length_a 42.583 _cell.length_b 41.549 _cell.length_c 72.298 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 D N14 7B1 . A 7B1 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 5TFX _atom_sites.fract_transf_matrix[1][1] 0.023484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006109 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 GOL A 1 302 1 GOL GOL . D 4 7B1 A 1 303 1 7B1 UNL . E 5 HOH A 1 401 258 HOH HOH . E 5 HOH A 2 402 232 HOH HOH . E 5 HOH A 3 403 197 HOH HOH . E 5 HOH A 4 404 223 HOH HOH . E 5 HOH A 5 405 175 HOH HOH . E 5 HOH A 6 406 231 HOH HOH . E 5 HOH A 7 407 207 HOH HOH . E 5 HOH A 8 408 166 HOH HOH . E 5 HOH A 9 409 143 HOH HOH . E 5 HOH A 10 410 55 HOH HOH . E 5 HOH A 11 411 205 HOH HOH . E 5 HOH A 12 412 97 HOH HOH . E 5 HOH A 13 413 184 HOH HOH . E 5 HOH A 14 414 45 HOH HOH . E 5 HOH A 15 415 224 HOH HOH . E 5 HOH A 16 416 5 HOH HOH . E 5 HOH A 17 417 87 HOH HOH . E 5 HOH A 18 418 114 HOH HOH . E 5 HOH A 19 419 240 HOH HOH . E 5 HOH A 20 420 54 HOH HOH . E 5 HOH A 21 421 220 HOH HOH . E 5 HOH A 22 422 19 HOH HOH . E 5 HOH A 23 423 35 HOH HOH . E 5 HOH A 24 424 155 HOH HOH . E 5 HOH A 25 425 144 HOH HOH . E 5 HOH A 26 426 200 HOH HOH . E 5 HOH A 27 427 138 HOH HOH . E 5 HOH A 28 428 56 HOH HOH . E 5 HOH A 29 429 111 HOH HOH . E 5 HOH A 30 430 154 HOH HOH . E 5 HOH A 31 431 25 HOH HOH . E 5 HOH A 32 432 209 HOH HOH . E 5 HOH A 33 433 180 HOH HOH . E 5 HOH A 34 434 203 HOH HOH . E 5 HOH A 35 435 46 HOH HOH . E 5 HOH A 36 436 150 HOH HOH . E 5 HOH A 37 437 94 HOH HOH . E 5 HOH A 38 438 28 HOH HOH . E 5 HOH A 39 439 33 HOH HOH . E 5 HOH A 40 440 157 HOH HOH . E 5 HOH A 41 441 1 HOH HOH . E 5 HOH A 42 442 137 HOH HOH . E 5 HOH A 43 443 106 HOH HOH . E 5 HOH A 44 444 201 HOH HOH . E 5 HOH A 45 445 95 HOH HOH . E 5 HOH A 46 446 24 HOH HOH . E 5 HOH A 47 447 107 HOH HOH . E 5 HOH A 48 448 80 HOH HOH . E 5 HOH A 49 449 119 HOH HOH . E 5 HOH A 50 450 195 HOH HOH . E 5 HOH A 51 451 71 HOH HOH . E 5 HOH A 52 452 140 HOH HOH . E 5 HOH A 53 453 36 HOH HOH . E 5 HOH A 54 454 17 HOH HOH . E 5 HOH A 55 455 177 HOH HOH . E 5 HOH A 56 456 22 HOH HOH . E 5 HOH A 57 457 116 HOH HOH . E 5 HOH A 58 458 34 HOH HOH . E 5 HOH A 59 459 18 HOH HOH . E 5 HOH A 60 460 51 HOH HOH . E 5 HOH A 61 461 52 HOH HOH . E 5 HOH A 62 462 204 HOH HOH . E 5 HOH A 63 463 13 HOH HOH . E 5 HOH A 64 464 15 HOH HOH . E 5 HOH A 65 465 77 HOH HOH . E 5 HOH A 66 466 90 HOH HOH . E 5 HOH A 67 467 113 HOH HOH . E 5 HOH A 68 468 57 HOH HOH . E 5 HOH A 69 469 9 HOH HOH . E 5 HOH A 70 470 120 HOH HOH . E 5 HOH A 71 471 39 HOH HOH . E 5 HOH A 72 472 108 HOH HOH . E 5 HOH A 73 473 153 HOH HOH . E 5 HOH A 74 474 41 HOH HOH . E 5 HOH A 75 475 183 HOH HOH . E 5 HOH A 76 476 31 HOH HOH . E 5 HOH A 77 477 58 HOH HOH . E 5 HOH A 78 478 62 HOH HOH . E 5 HOH A 79 479 26 HOH HOH . E 5 HOH A 80 480 6 HOH HOH . E 5 HOH A 81 481 218 HOH HOH . E 5 HOH A 82 482 104 HOH HOH . E 5 HOH A 83 483 181 HOH HOH . E 5 HOH A 84 484 174 HOH HOH . E 5 HOH A 85 485 213 HOH HOH . E 5 HOH A 86 486 20 HOH HOH . E 5 HOH A 87 487 8 HOH HOH . E 5 HOH A 88 488 112 HOH HOH . E 5 HOH A 89 489 208 HOH HOH . E 5 HOH A 90 490 105 HOH HOH . E 5 HOH A 91 491 74 HOH HOH . E 5 HOH A 92 492 32 HOH HOH . E 5 HOH A 93 493 117 HOH HOH . E 5 HOH A 94 494 161 HOH HOH . E 5 HOH A 95 495 82 HOH HOH . E 5 HOH A 96 496 64 HOH HOH . E 5 HOH A 97 497 21 HOH HOH . E 5 HOH A 98 498 115 HOH HOH . E 5 HOH A 99 499 126 HOH HOH . E 5 HOH A 100 500 152 HOH HOH . E 5 HOH A 101 501 7 HOH HOH . E 5 HOH A 102 502 151 HOH HOH . E 5 HOH A 103 503 215 HOH HOH . E 5 HOH A 104 504 47 HOH HOH . E 5 HOH A 105 505 230 HOH HOH . E 5 HOH A 106 506 73 HOH HOH . E 5 HOH A 107 507 42 HOH HOH . E 5 HOH A 108 508 267 HOH HOH . E 5 HOH A 109 509 146 HOH HOH . E 5 HOH A 110 510 121 HOH HOH . E 5 HOH A 111 511 75 HOH HOH . E 5 HOH A 112 512 139 HOH HOH . E 5 HOH A 113 513 102 HOH HOH . E 5 HOH A 114 514 68 HOH HOH . E 5 HOH A 115 515 53 HOH HOH . E 5 HOH A 116 516 60 HOH HOH . E 5 HOH A 117 517 103 HOH HOH . E 5 HOH A 118 518 48 HOH HOH . E 5 HOH A 119 519 49 HOH HOH . E 5 HOH A 120 520 219 HOH HOH . E 5 HOH A 121 521 99 HOH HOH . E 5 HOH A 122 522 194 HOH HOH . E 5 HOH A 123 523 270 HOH HOH . E 5 HOH A 124 524 124 HOH HOH . E 5 HOH A 125 525 171 HOH HOH . E 5 HOH A 126 526 100 HOH HOH . E 5 HOH A 127 527 176 HOH HOH . E 5 HOH A 128 528 225 HOH HOH . E 5 HOH A 129 529 66 HOH HOH . E 5 HOH A 130 530 85 HOH HOH . E 5 HOH A 131 531 3 HOH HOH . E 5 HOH A 132 532 217 HOH HOH . E 5 HOH A 133 533 29 HOH HOH . E 5 HOH A 134 534 125 HOH HOH . E 5 HOH A 135 535 61 HOH HOH . E 5 HOH A 136 536 196 HOH HOH . E 5 HOH A 137 537 156 HOH HOH . E 5 HOH A 138 538 89 HOH HOH . E 5 HOH A 139 539 98 HOH HOH . E 5 HOH A 140 540 163 HOH HOH . E 5 HOH A 141 541 12 HOH HOH . E 5 HOH A 142 542 248 HOH HOH . E 5 HOH A 143 543 43 HOH HOH . E 5 HOH A 144 544 228 HOH HOH . E 5 HOH A 145 545 214 HOH HOH . E 5 HOH A 146 546 136 HOH HOH . E 5 HOH A 147 547 16 HOH HOH . E 5 HOH A 148 548 216 HOH HOH . E 5 HOH A 149 549 145 HOH HOH . E 5 HOH A 150 550 27 HOH HOH . E 5 HOH A 151 551 199 HOH HOH . E 5 HOH A 152 552 59 HOH HOH . E 5 HOH A 153 553 83 HOH HOH . E 5 HOH A 154 554 101 HOH HOH . E 5 HOH A 155 555 76 HOH HOH . E 5 HOH A 156 556 91 HOH HOH . E 5 HOH A 157 557 226 HOH HOH . E 5 HOH A 158 558 110 HOH HOH . E 5 HOH A 159 559 210 HOH HOH . E 5 HOH A 160 560 261 HOH HOH . E 5 HOH A 161 561 14 HOH HOH . E 5 HOH A 162 562 38 HOH HOH . E 5 HOH A 163 563 170 HOH HOH . E 5 HOH A 164 564 167 HOH HOH . E 5 HOH A 165 565 4 HOH HOH . E 5 HOH A 166 566 44 HOH HOH . E 5 HOH A 167 567 268 HOH HOH . E 5 HOH A 168 568 67 HOH HOH . E 5 HOH A 169 569 69 HOH HOH . E 5 HOH A 170 570 10 HOH HOH . E 5 HOH A 171 571 173 HOH HOH . E 5 HOH A 172 572 160 HOH HOH . E 5 HOH A 173 573 40 HOH HOH . E 5 HOH A 174 574 109 HOH HOH . E 5 HOH A 175 575 127 HOH HOH . E 5 HOH A 176 576 192 HOH HOH . E 5 HOH A 177 577 86 HOH HOH . E 5 HOH A 178 578 2 HOH HOH . E 5 HOH A 179 579 70 HOH HOH . E 5 HOH A 180 580 148 HOH HOH . E 5 HOH A 181 581 202 HOH HOH . E 5 HOH A 182 582 169 HOH HOH . E 5 HOH A 183 583 206 HOH HOH . E 5 HOH A 184 584 11 HOH HOH . E 5 HOH A 185 585 257 HOH HOH . E 5 HOH A 186 586 84 HOH HOH . E 5 HOH A 187 587 131 HOH HOH . E 5 HOH A 188 588 198 HOH HOH . E 5 HOH A 189 589 256 HOH HOH . E 5 HOH A 190 590 235 HOH HOH . E 5 HOH A 191 591 165 HOH HOH . E 5 HOH A 192 592 193 HOH HOH . E 5 HOH A 193 593 168 HOH HOH . E 5 HOH A 194 594 37 HOH HOH . E 5 HOH A 195 595 178 HOH HOH . E 5 HOH A 196 596 147 HOH HOH . E 5 HOH A 197 597 254 HOH HOH . E 5 HOH A 198 598 63 HOH HOH . E 5 HOH A 199 599 30 HOH HOH . E 5 HOH A 200 600 255 HOH HOH . E 5 HOH A 201 601 50 HOH HOH . E 5 HOH A 202 602 81 HOH HOH . E 5 HOH A 203 603 222 HOH HOH . E 5 HOH A 204 604 123 HOH HOH . E 5 HOH A 205 605 159 HOH HOH . E 5 HOH A 206 606 211 HOH HOH . E 5 HOH A 207 607 229 HOH HOH . E 5 HOH A 208 608 23 HOH HOH . E 5 HOH A 209 609 65 HOH HOH . E 5 HOH A 210 610 158 HOH HOH . E 5 HOH A 211 611 129 HOH HOH . E 5 HOH A 212 612 96 HOH HOH . E 5 HOH A 213 613 236 HOH HOH . E 5 HOH A 214 614 191 HOH HOH . E 5 HOH A 215 615 149 HOH HOH . E 5 HOH A 216 616 237 HOH HOH . E 5 HOH A 217 617 253 HOH HOH . E 5 HOH A 218 618 118 HOH HOH . E 5 HOH A 219 619 186 HOH HOH . E 5 HOH A 220 620 189 HOH HOH . E 5 HOH A 221 621 247 HOH HOH . E 5 HOH A 222 622 264 HOH HOH . E 5 HOH A 223 623 188 HOH HOH . E 5 HOH A 224 624 252 HOH HOH . E 5 HOH A 225 625 172 HOH HOH . E 5 HOH A 226 626 72 HOH HOH . E 5 HOH A 227 627 243 HOH HOH . E 5 HOH A 228 628 241 HOH HOH . E 5 HOH A 229 629 93 HOH HOH . E 5 HOH A 230 630 92 HOH HOH . E 5 HOH A 231 631 134 HOH HOH . E 5 HOH A 232 632 185 HOH HOH . E 5 HOH A 233 633 249 HOH HOH . E 5 HOH A 234 634 187 HOH HOH . E 5 HOH A 235 635 135 HOH HOH . E 5 HOH A 236 636 88 HOH HOH . E 5 HOH A 237 637 234 HOH HOH . E 5 HOH A 238 638 179 HOH HOH . E 5 HOH A 239 639 128 HOH HOH . E 5 HOH A 240 640 246 HOH HOH . E 5 HOH A 241 641 212 HOH HOH . E 5 HOH A 242 642 190 HOH HOH . E 5 HOH A 243 643 262 HOH HOH . E 5 HOH A 244 644 141 HOH HOH . E 5 HOH A 245 645 79 HOH HOH . E 5 HOH A 246 646 260 HOH HOH . E 5 HOH A 247 647 233 HOH HOH . E 5 HOH A 248 648 227 HOH HOH . E 5 HOH A 249 649 133 HOH HOH . E 5 HOH A 250 650 164 HOH HOH . E 5 HOH A 251 651 259 HOH HOH . E 5 HOH A 252 652 269 HOH HOH . E 5 HOH A 253 653 182 HOH HOH . E 5 HOH A 254 654 122 HOH HOH . E 5 HOH A 255 655 162 HOH HOH . E 5 HOH A 256 656 245 HOH HOH . E 5 HOH A 257 657 263 HOH HOH . E 5 HOH A 258 658 132 HOH HOH . E 5 HOH A 259 659 238 HOH HOH . E 5 HOH A 260 660 251 HOH HOH . E 5 HOH A 261 661 130 HOH HOH . E 5 HOH A 262 662 244 HOH HOH . E 5 HOH A 263 663 78 HOH HOH . E 5 HOH A 264 664 265 HOH HOH . E 5 HOH A 265 665 239 HOH HOH . E 5 HOH A 266 666 242 HOH HOH . E 5 HOH A 267 667 142 HOH HOH . E 5 HOH A 268 668 221 HOH HOH . E 5 HOH A 269 669 250 HOH HOH . E 5 HOH A 270 670 266 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -1.426 2.253 81.38 1 12.72 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -2.215 3.354 80.902 1 13.41 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -2.077 0.962 81.015 1 12.62 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -2.08 0.784 79.627 1 12.17 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -1.379 -0.237 81.696 1 12.12 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -0.07 -0.391 81.183 1 11.46 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #