data_5TGC # _model_server_result.job_id GIyqULhJjiwVZyIQU2grRA _model_server_result.datetime_utc '2024-11-21 22:49:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5TGC # _exptl.entry_id 5TGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.03 _cell.angle_beta 104.64 _cell.angle_gamma 96.2 _cell.entry_id 5TGC _cell.length_a 79.387 _cell.length_b 87.982 _cell.length_c 105.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I 1 1 D,E,F,J,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5TGC _atom_sites.fract_transf_matrix[1][1] 0.012597 _atom_sites.fract_transf_matrix[1][2] 0.001369 _atom_sites.fract_transf_matrix[1][3] 0.004079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011433 _atom_sites.fract_transf_matrix[2][3] 0.004515 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 501 501 ATP ATP . H 5 SO4 B 1 501 501 SO4 SO4 . I 5 SO4 B 1 502 502 SO4 SO4 . J 4 ATP D 1 501 501 ATP ATP . K 5 SO4 E 1 501 501 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 -69.122 48.971 9.4 1 140.48 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . G 4 -69.256 47.871 8.374 1 140.18 1 O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . G 4 -68.365 50.187 8.921 1 137.33 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . G 4 -68.71 48.501 10.774 1 140.07 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . G 4 -71.412 50.274 8.426 1 66.31 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . G 4 -70.629 50.152 7.139 1 73.69 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . G 4 -72.87 49.886 8.46 1 57.45 1 O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . G 4 -70.633 49.496 9.603 1 48.34 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . G 4 -70.901 53.037 8.096 1 79.03 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . G 4 -69.711 52.705 7.226 1 80.61 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . G 4 -72.164 53.579 7.468 1 77.68 1 O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . G 4 -71.293 51.769 9.005 1 57.29 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . G 4 -70.398 54.066 9.229 1 60.87 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . G 4 -71.313 54.987 9.812 1 61.17 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . G 4 -70.6 55.9 10.803 1 54.73 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . G 4 -70.029 56.98 10.067 1 49.68 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . G 4 -71.545 56.497 11.837 1 58.3 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . G 4 -71.005 56.351 13.155 1 60.87 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . G 4 -71.688 57.961 11.466 1 54.35 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . G 4 -71.655 58.806 12.62 1 56.52 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . G 4 -70.511 58.239 10.54 1 48.53 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . G 4 -70.871 59.095 9.382 1 46.93 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . G 4 -71.941 58.963 8.572 1 47.2 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . G 4 -71.941 59.93 7.618 1 47.56 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . G 4 -70.852 60.696 7.813 1 46.39 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . G 4 -70.244 61.882 7.169 1 46.36 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . G 4 -70.825 62.462 6.089 1 53.19 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . G 4 -69.095 62.367 7.693 1 44.59 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . G 4 -68.505 61.807 8.765 1 46.71 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . G 4 -69.006 60.73 9.394 1 45.83 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . G 4 -70.153 60.142 8.978 1 46.71 ? C4 ATP 501 A 1 HETATM 32 H "H5'1" ATP . . . G 4 -71.775 55.59 9.027 1 61.42 ? "H5'1" ATP 501 A 1 HETATM 33 H "H5'2" ATP . . . G 4 -72.106 54.439 10.326 1 61.42 ? "H5'2" ATP 501 A 1 HETATM 34 H H4' ATP . . . G 4 -69.813 55.331 11.317 1 54.98 ? H4' ATP 501 A 1 HETATM 35 H H3' ATP . . . G 4 -72.525 56.005 11.764 1 58.55 ? H3' ATP 501 A 1 HETATM 36 H HO3' ATP . . . G 4 -71.616 56.735 13.799 1 61.12 ? HO3' ATP 501 A 1 HETATM 37 H H2' ATP . . . G 4 -72.627 58.104 10.912 1 54.6 ? H2' ATP 501 A 1 HETATM 38 H HO2' ATP . . . G 4 -72.395 58.585 13.202 1 56.77 ? HO2' ATP 501 A 1 HETATM 39 H H1' ATP . . . G 4 -69.723 58.733 11.126 1 48.78 ? H1' ATP 501 A 1 HETATM 40 H H8 ATP . . . G 4 -72.699 58.195 8.672 1 47.45 ? H8 ATP 501 A 1 HETATM 41 H HN61 ATP . . . G 4 -70.399 63.271 5.66 1 53.44 ? HN61 ATP 501 A 1 HETATM 42 H HN62 ATP . . . G 4 -71.682 62.083 5.713 1 53.44 ? HN62 ATP 501 A 1 HETATM 43 H H2 ATP . . . G 4 -67.587 62.244 9.137 1 46.96 ? H2 ATP 501 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #