data_5TGC
#
_model_server_result.job_id            N-ulMtaBsMZyuVBueqGKoA 
_model_server_result.datetime_utc      '2024-11-21 23:05:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tgc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    5TGC 
#
_exptl.entry_id    5TGC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         109.03 
_cell.angle_beta          104.64 
_cell.angle_gamma         96.2 
_cell.entry_id            5TGC 
_cell.length_a            79.387 
_cell.length_b            87.982 
_cell.length_c            105.43 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TGC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I 1 1 
D,E,F,J,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5TGC 
_atom_sites.fract_transf_matrix[1][1]    0.012597 
_atom_sites.fract_transf_matrix[1][2]    0.001369 
_atom_sites.fract_transf_matrix[1][3]    0.004079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011433 
_atom_sites.fract_transf_matrix[2][3]    0.004515 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ATP A 1 501 501 ATP ATP . 
H 5 SO4 B 1 501 501 SO4 SO4 . 
I 5 SO4 B 1 502 502 SO4 SO4 . 
J 4 ATP D 1 501 501 ATP ATP . 
K 5 SO4 E 1 501 501 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 4 -88.069 45.643 -60.868 1 140.3 ? PG ATP 501 D 1 
HETATM 2 O O1G ATP . . . J 4 -88.199 45.137 -62.284 1 139.89 ? O1G ATP 501 D 1 
HETATM 3 O O2G ATP . . . J 4 -87.069 44.887 -60.027 1 140 1 O2G ATP 501 D 1 
HETATM 4 O O3G ATP . . . J 4 -89.396 45.881 -60.187 1 137.15 ? O3G ATP 501 D 1 
HETATM 5 P PB ATP . . . J 4 -87.266 48.128 -59.797 1 66.13 ? PB ATP 501 D 1 
HETATM 6 O O1B ATP . . . J 4 -86.046 48.995 -59.976 1 57.27 1 O1B ATP 501 D 1 
HETATM 7 O O2B ATP . . . J 4 -87.476 47.385 -58.499 1 73.51 ? O2B ATP 501 D 1 
HETATM 8 O O3B ATP . . . J 4 -87.419 47.111 -61.041 1 48.16 ? O3B ATP 501 D 1 
HETATM 9 P PA ATP . . . J 4 -89.458 49.651 -58.948 1 78.85 ? PA ATP 501 D 1 
HETATM 10 O O1A ATP . . . J 4 -88.814 50.901 -58.392 1 77.5 1 O1A ATP 501 D 1 
HETATM 11 O O2A ATP . . . J 4 -89.89 48.541 -58.017 1 80.43 ? O2A ATP 501 D 1 
HETATM 12 O O3A ATP . . . J 4 -88.523 49.065 -60.112 1 57.11 ? O3A ATP 501 D 1 
HETATM 13 O O5' ATP . . . J 4 -90.737 50.055 -59.835 1 60.69 ? O5' ATP 501 D 1 
HETATM 14 C C5' ATP . . . J 4 -90.802 51.339 -60.443 1 60.99 ? C5' ATP 501 D 1 
HETATM 15 C C4' ATP . . . J 4 -92.115 51.483 -61.198 1 54.55 ? C4' ATP 501 D 1 
HETATM 16 O O4' ATP . . . J 4 -93.16 51.669 -60.243 1 49.5 ? O4' ATP 501 D 1 
HETATM 17 C C3' ATP . . . J 4 -92.091 52.693 -62.116 1 58.12 ? C3' ATP 501 D 1 
HETATM 18 O O3' ATP . . . J 4 -92.62 52.339 -63.4 1 60.69 ? O3' ATP 501 D 1 
HETATM 19 C C2' ATP . . . J 4 -92.941 53.73 -61.408 1 54.17 ? C2' ATP 501 D 1 
HETATM 20 O O2' ATP . . . J 4 -93.718 54.504 -62.327 1 56.34 ? O2' ATP 501 D 1 
HETATM 21 C C1' ATP . . . J 4 -93.818 52.916 -60.461 1 48.35 ? C1' ATP 501 D 1 
HETATM 22 N N9 ATP . . . J 4 -94.054 53.601 -59.163 1 46.75 ? N9 ATP 501 D 1 
HETATM 23 C C8 ATP . . . J 4 -93.129 54.192 -58.381 1 47.02 ? C8 ATP 501 D 1 
HETATM 24 N N7 ATP . . . J 4 -93.711 54.721 -57.272 1 47.38 ? N7 ATP 501 D 1 
HETATM 25 C C5 ATP . . . J 4 -95.031 54.468 -57.338 1 46.21 ? C5 ATP 501 D 1 
HETATM 26 C C6 ATP . . . J 4 -96.225 54.743 -56.503 1 46.18 ? C6 ATP 501 D 1 
HETATM 27 N N6 ATP . . . J 4 -96.124 55.418 -55.332 1 53.01 ? N6 ATP 501 D 1 
HETATM 28 N N1 ATP . . . J 4 -97.421 54.297 -56.947 1 44.41 ? N1 ATP 501 D 1 
HETATM 29 C C2 ATP . . . J 4 -97.551 53.625 -58.106 1 46.53 ? C2 ATP 501 D 1 
HETATM 30 N N3 ATP . . . J 4 -96.51 53.345 -58.909 1 45.65 ? N3 ATP 501 D 1 
HETATM 31 C C4 ATP . . . J 4 -95.251 53.731 -58.59 1 46.53 ? C4 ATP 501 D 1 
HETATM 32 H "H5'1" ATP . . . J 4 -90.73 52.115 -59.678 1 61.42 ? "H5'1" ATP 501 D 1 
HETATM 33 H "H5'2" ATP . . . J 4 -89.965 51.463 -61.133 1 61.42 ? "H5'2" ATP 501 D 1 
HETATM 34 H H4' ATP . . . J 4 -92.295 50.576 -61.793 1 54.98 ? H4' ATP 501 D 1 
HETATM 35 H H3' ATP . . . J 4 -91.06 53.063 -62.208 1 58.55 ? H3' ATP 501 D 1 
HETATM 36 H HO3' ATP . . . J 4 -92.603 53.112 -63.98 1 61.12 ? HO3' ATP 501 D 1 
HETATM 37 H H2' ATP . . . J 4 -92.288 54.386 -60.817 1 54.6 ? H2' ATP 501 D 1 
HETATM 38 H HO2' ATP . . . J 4 -93.128 54.982 -62.926 1 56.77 ? HO2' ATP 501 D 1 
HETATM 39 H H1' ATP . . . J 4 -94.782 52.736 -60.956 1 48.78 ? H1' ATP 501 D 1 
HETATM 40 H H8 ATP . . . J 4 -92.071 54.24 -58.605 1 47.45 ? H8 ATP 501 D 1 
HETATM 41 H HN61 ATP . . . J 4 -96.95 55.593 -54.778 1 53.44 ? HN61 ATP 501 D 1 
HETATM 42 H HN62 ATP . . . J 4 -95.223 55.744 -55.012 1 53.44 ? HN62 ATP 501 D 1 
HETATM 43 H H2 ATP . . . J 4 -98.538 53.296 -58.405 1 46.96 ? H2 ATP 501 D 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#