data_5TGK # _model_server_result.job_id -VDjpfHG-KwvRXEO5pcQYg _model_server_result.datetime_utc '2024-11-04 20:55:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 5TGK # _exptl.entry_id 5TGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TGK _cell.length_a 40.16 _cell.length_b 40.16 _cell.length_c 141.775 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 48 A THR 465 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 A OE1 GLN 76 A GLN 493 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 B MG MG . A MG 701 1_555 C O1G DTP . A DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc4 B MG MG . A MG 701 1_555 C O1B DTP . A DTP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 B MG MG . A MG 701 1_555 D O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 B MG MG . A MG 701 1_555 D O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 5TGK _atom_sites.fract_transf_matrix[1][1] 0.0249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 700 MG MG . C 3 DTP A 1 702 1 DTP DTP . D 4 HOH A 1 801 177 HOH HOH . D 4 HOH A 2 802 168 HOH HOH . D 4 HOH A 3 803 86 HOH HOH . D 4 HOH A 4 804 45 HOH HOH . D 4 HOH A 5 805 60 HOH HOH . D 4 HOH A 6 806 33 HOH HOH . D 4 HOH A 7 807 54 HOH HOH . D 4 HOH A 8 808 119 HOH HOH . D 4 HOH A 9 809 53 HOH HOH . D 4 HOH A 10 810 57 HOH HOH . D 4 HOH A 11 811 16 HOH HOH . D 4 HOH A 12 812 107 HOH HOH . D 4 HOH A 13 813 87 HOH HOH . D 4 HOH A 14 814 84 HOH HOH . D 4 HOH A 15 815 56 HOH HOH . D 4 HOH A 16 816 38 HOH HOH . D 4 HOH A 17 817 95 HOH HOH . D 4 HOH A 18 818 25 HOH HOH . D 4 HOH A 19 819 94 HOH HOH . D 4 HOH A 20 820 78 HOH HOH . D 4 HOH A 21 821 1 HOH HOH . D 4 HOH A 22 822 91 HOH HOH . D 4 HOH A 23 823 23 HOH HOH . D 4 HOH A 24 824 120 HOH HOH . D 4 HOH A 25 825 83 HOH HOH . D 4 HOH A 26 826 19 HOH HOH . D 4 HOH A 27 827 35 HOH HOH . D 4 HOH A 28 828 71 HOH HOH . D 4 HOH A 29 829 138 HOH HOH . D 4 HOH A 30 830 20 HOH HOH . D 4 HOH A 31 831 11 HOH HOH . D 4 HOH A 32 832 4 HOH HOH . D 4 HOH A 33 833 132 HOH HOH . D 4 HOH A 34 834 75 HOH HOH . D 4 HOH A 35 835 162 HOH HOH . D 4 HOH A 36 836 42 HOH HOH . D 4 HOH A 37 837 47 HOH HOH . D 4 HOH A 38 838 59 HOH HOH . D 4 HOH A 39 839 3 HOH HOH . D 4 HOH A 40 840 99 HOH HOH . D 4 HOH A 41 841 9 HOH HOH . D 4 HOH A 42 842 117 HOH HOH . D 4 HOH A 43 843 22 HOH HOH . D 4 HOH A 44 844 49 HOH HOH . D 4 HOH A 45 845 7 HOH HOH . D 4 HOH A 46 846 28 HOH HOH . D 4 HOH A 47 847 79 HOH HOH . D 4 HOH A 48 848 150 HOH HOH . D 4 HOH A 49 849 104 HOH HOH . D 4 HOH A 50 850 85 HOH HOH . D 4 HOH A 51 851 74 HOH HOH . D 4 HOH A 52 852 10 HOH HOH . D 4 HOH A 53 853 153 HOH HOH . D 4 HOH A 54 854 43 HOH HOH . D 4 HOH A 55 855 21 HOH HOH . D 4 HOH A 56 856 131 HOH HOH . D 4 HOH A 57 857 144 HOH HOH . D 4 HOH A 58 858 30 HOH HOH . D 4 HOH A 59 859 5 HOH HOH . D 4 HOH A 60 860 111 HOH HOH . D 4 HOH A 61 861 8 HOH HOH . D 4 HOH A 62 862 63 HOH HOH . D 4 HOH A 63 863 123 HOH HOH . D 4 HOH A 64 864 115 HOH HOH . D 4 HOH A 65 865 96 HOH HOH . D 4 HOH A 66 866 66 HOH HOH . D 4 HOH A 67 867 98 HOH HOH . D 4 HOH A 68 868 146 HOH HOH . D 4 HOH A 69 869 14 HOH HOH . D 4 HOH A 70 870 12 HOH HOH . D 4 HOH A 71 871 26 HOH HOH . D 4 HOH A 72 872 121 HOH HOH . D 4 HOH A 73 873 31 HOH HOH . D 4 HOH A 74 874 164 HOH HOH . D 4 HOH A 75 875 175 HOH HOH . D 4 HOH A 76 876 61 HOH HOH . D 4 HOH A 77 877 18 HOH HOH . D 4 HOH A 78 878 113 HOH HOH . D 4 HOH A 79 879 15 HOH HOH . D 4 HOH A 80 880 52 HOH HOH . D 4 HOH A 81 881 13 HOH HOH . D 4 HOH A 82 882 147 HOH HOH . D 4 HOH A 83 883 37 HOH HOH . D 4 HOH A 84 884 41 HOH HOH . D 4 HOH A 85 885 32 HOH HOH . D 4 HOH A 86 886 140 HOH HOH . D 4 HOH A 87 887 70 HOH HOH . D 4 HOH A 88 888 2 HOH HOH . D 4 HOH A 89 889 58 HOH HOH . D 4 HOH A 90 890 64 HOH HOH . D 4 HOH A 91 891 102 HOH HOH . D 4 HOH A 92 892 36 HOH HOH . D 4 HOH A 93 893 73 HOH HOH . D 4 HOH A 94 894 17 HOH HOH . D 4 HOH A 95 895 167 HOH HOH . D 4 HOH A 96 896 44 HOH HOH . D 4 HOH A 97 897 68 HOH HOH . D 4 HOH A 98 898 90 HOH HOH . D 4 HOH A 99 899 29 HOH HOH . D 4 HOH A 100 900 50 HOH HOH . D 4 HOH A 101 901 48 HOH HOH . D 4 HOH A 102 902 109 HOH HOH . D 4 HOH A 103 903 82 HOH HOH . D 4 HOH A 104 904 6 HOH HOH . D 4 HOH A 105 905 55 HOH HOH . D 4 HOH A 106 906 81 HOH HOH . D 4 HOH A 107 907 101 HOH HOH . D 4 HOH A 108 908 166 HOH HOH . D 4 HOH A 109 909 27 HOH HOH . D 4 HOH A 110 910 40 HOH HOH . D 4 HOH A 111 911 69 HOH HOH . D 4 HOH A 112 912 65 HOH HOH . D 4 HOH A 113 913 88 HOH HOH . D 4 HOH A 114 914 171 HOH HOH . D 4 HOH A 115 915 72 HOH HOH . D 4 HOH A 116 916 139 HOH HOH . D 4 HOH A 117 917 24 HOH HOH . D 4 HOH A 118 918 46 HOH HOH . D 4 HOH A 119 919 148 HOH HOH . D 4 HOH A 120 920 157 HOH HOH . D 4 HOH A 121 921 62 HOH HOH . D 4 HOH A 122 922 34 HOH HOH . D 4 HOH A 123 923 105 HOH HOH . D 4 HOH A 124 924 159 HOH HOH . D 4 HOH A 125 925 89 HOH HOH . D 4 HOH A 126 926 39 HOH HOH . D 4 HOH A 127 927 77 HOH HOH . D 4 HOH A 128 928 130 HOH HOH . D 4 HOH A 129 929 152 HOH HOH . D 4 HOH A 130 930 67 HOH HOH . D 4 HOH A 131 931 133 HOH HOH . D 4 HOH A 132 932 161 HOH HOH . D 4 HOH A 133 933 124 HOH HOH . D 4 HOH A 134 934 116 HOH HOH . D 4 HOH A 135 935 110 HOH HOH . D 4 HOH A 136 936 163 HOH HOH . D 4 HOH A 137 937 173 HOH HOH . D 4 HOH A 138 938 103 HOH HOH . D 4 HOH A 139 939 108 HOH HOH . D 4 HOH A 140 940 174 HOH HOH . D 4 HOH A 141 941 100 HOH HOH . D 4 HOH A 142 942 156 HOH HOH . D 4 HOH A 143 943 136 HOH HOH . D 4 HOH A 144 944 172 HOH HOH . D 4 HOH A 145 945 128 HOH HOH . D 4 HOH A 146 946 122 HOH HOH . D 4 HOH A 147 947 112 HOH HOH . D 4 HOH A 148 948 135 HOH HOH . D 4 HOH A 149 949 141 HOH HOH . D 4 HOH A 150 950 106 HOH HOH . D 4 HOH A 151 951 126 HOH HOH . D 4 HOH A 152 952 149 HOH HOH . D 4 HOH A 153 953 155 HOH HOH . D 4 HOH A 154 954 142 HOH HOH . D 4 HOH A 155 955 51 HOH HOH . D 4 HOH A 156 956 154 HOH HOH . D 4 HOH A 157 957 114 HOH HOH . D 4 HOH A 158 958 118 HOH HOH . D 4 HOH A 159 959 97 HOH HOH . D 4 HOH A 160 960 169 HOH HOH . D 4 HOH A 161 961 134 HOH HOH . D 4 HOH A 162 962 127 HOH HOH . D 4 HOH A 163 963 80 HOH HOH . D 4 HOH A 164 964 176 HOH HOH . D 4 HOH A 165 965 178 HOH HOH . D 4 HOH A 166 966 143 HOH HOH . D 4 HOH A 167 967 151 HOH HOH . D 4 HOH A 168 968 170 HOH HOH . D 4 HOH A 169 969 160 HOH HOH . D 4 HOH A 170 970 158 HOH HOH . D 4 HOH A 171 971 125 HOH HOH . D 4 HOH A 172 972 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . C 3 50.083 27.862 8.463 1 17.81 ? PG DTP 702 A 1 HETATM 2 O O1G DTP . . . C 3 49.867 27.767 6.964 1 18.19 ? O1G DTP 702 A 1 HETATM 3 O O2G DTP . . . C 3 48.797 28.256 9.147 1 18.97 -1 O2G DTP 702 A 1 HETATM 4 O O3G DTP . . . C 3 51.193 28.796 8.88 1 17.25 -1 O3G DTP 702 A 1 HETATM 5 P PB DTP . . . C 3 49.961 24.964 8.592 1 16.13 ? PB DTP 702 A 1 HETATM 6 O O1B DTP . . . C 3 49.486 24.92 7.176 1 14.09 ? O1B DTP 702 A 1 HETATM 7 O O2B DTP . . . C 3 48.927 24.487 9.594 1 18.34 -1 O2B DTP 702 A 1 HETATM 8 O O3B DTP . . . C 3 50.568 26.413 9.034 1 18.16 ? O3B DTP 702 A 1 HETATM 9 P PA DTP . . . C 3 52.023 23.108 7.625 1 19.02 ? PA DTP 702 A 1 HETATM 10 O O1A DTP . . . C 3 52.416 23.893 6.4 1 17.98 ? O1A DTP 702 A 1 HETATM 11 O O2A DTP . . . C 3 51.148 21.914 7.344 1 16.2 -1 O2A DTP 702 A 1 HETATM 12 O O3A DTP . . . C 3 51.3 24.031 8.771 1 17.42 ? O3A DTP 702 A 1 HETATM 13 O O5' DTP . . . C 3 53.421 22.636 8.379 1 22.54 ? O5' DTP 702 A 1 HETATM 14 C C5' DTP . . . C 3 53.394 21.713 9.449 1 22.07 ? C5' DTP 702 A 1 HETATM 15 C C4' DTP . . . C 3 54.834 21.214 9.576 1 24.48 ? C4' DTP 702 A 1 HETATM 16 O O4' DTP . . . C 3 55.172 20.588 8.517 1 26.5 ? O4' DTP 702 A 1 HETATM 17 C C3' DTP . . . C 3 55.863 22.493 9.721 1 29.28 ? C3' DTP 702 A 1 HETATM 18 O O3' DTP . . . C 3 56.845 22.13 10.775 1 37.51 ? O3' DTP 702 A 1 HETATM 19 C C2' DTP . . . C 3 56.428 22.666 8.632 1 26.97 ? C2' DTP 702 A 1 HETATM 20 C C1' DTP . . . C 3 56.4 21.26 7.944 1 28.35 ? C1' DTP 702 A 1 HETATM 21 N N9 DTP . . . C 3 56.206 21.268 6.606 1 31.55 ? N9 DTP 702 A 1 HETATM 22 C C8 DTP . . . C 3 55.211 21.783 5.872 1 27.03 ? C8 DTP 702 A 1 HETATM 23 N N7 DTP . . . C 3 55.438 21.477 4.587 1 29.68 ? N7 DTP 702 A 1 HETATM 24 C C5 DTP . . . C 3 56.569 20.755 4.524 1 28.83 ? C5 DTP 702 A 1 HETATM 25 C C6 DTP . . . C 3 57.249 20.186 3.465 1 32 ? C6 DTP 702 A 1 HETATM 26 N N6 DTP . . . C 3 56.919 20.217 2.043 1 31.14 ? N6 DTP 702 A 1 HETATM 27 N N1 DTP . . . C 3 58.365 19.512 3.692 1 34.02 ? N1 DTP 702 A 1 HETATM 28 C C2 DTP . . . C 3 58.846 19.375 4.951 1 31.6 ? C2 DTP 702 A 1 HETATM 29 N N3 DTP . . . C 3 58.18 19.924 5.993 1 34.14 ? N3 DTP 702 A 1 HETATM 30 C C4 DTP . . . C 3 57.041 20.616 5.77 1 31.55 ? C4 DTP 702 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #