data_5TGS # _model_server_result.job_id QrD1BKJlTEpZxD6op_KsHQ _model_server_result.datetime_utc '2025-02-05 14:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5TGS # _exptl.entry_id 5TGS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TGS _cell.length_a 54.182 _cell.length_b 79.297 _cell.length_c 122.224 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 54 A CYS 34 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 A SG CYS 58 A CYS 38 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A SG CYS 61 A CYS 41 1_555 C FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 C FE2 SF4 . A SF4 301 1_555 D OXT MET . A MET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 B SG CYS 54 B CYS 34 1_555 F FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 B SG CYS 58 B CYS 38 1_555 F FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B SG CYS 61 B CYS 41 1_555 F FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 F FE2 SF4 . B SF4 301 1_555 H O HOH . B HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 306 n n FE1 S3 SF4 sing 307 n n FE1 S4 SF4 sing 308 n n FE2 S1 SF4 sing 309 n n FE2 S3 SF4 sing 310 n n FE2 S4 SF4 sing 311 n n FE3 S1 SF4 sing 312 n n FE3 S2 SF4 sing 313 n n FE3 S4 SF4 sing 314 n n FE4 S1 SF4 sing 315 n n FE4 S2 SF4 sing 316 n n FE4 S3 SF4 sing 317 n n # _atom_sites.entry_id 5TGS _atom_sites.fract_transf_matrix[1][1] 0.018456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 301 1 SF4 SF4 . D 3 MET A 1 302 1 MET MET . E 4 PEG A 1 303 1 PEG PEG . F 2 SF4 B 1 301 2 SF4 SF4 . G 5 HOH A 1 401 64 HOH HOH . G 5 HOH A 2 402 82 HOH HOH . G 5 HOH A 3 403 54 HOH HOH . G 5 HOH A 4 404 78 HOH HOH . G 5 HOH A 5 405 16 HOH HOH . G 5 HOH A 6 406 24 HOH HOH . G 5 HOH A 7 407 31 HOH HOH . G 5 HOH A 8 408 29 HOH HOH . G 5 HOH A 9 409 43 HOH HOH . G 5 HOH A 10 410 72 HOH HOH . G 5 HOH A 11 411 77 HOH HOH . G 5 HOH A 12 412 1 HOH HOH . G 5 HOH A 13 413 53 HOH HOH . G 5 HOH A 14 414 13 HOH HOH . G 5 HOH A 15 415 67 HOH HOH . G 5 HOH A 16 416 86 HOH HOH . G 5 HOH A 17 417 23 HOH HOH . G 5 HOH A 18 418 4 HOH HOH . G 5 HOH A 19 419 76 HOH HOH . G 5 HOH A 20 420 6 HOH HOH . G 5 HOH A 21 421 55 HOH HOH . G 5 HOH A 22 422 52 HOH HOH . G 5 HOH A 23 423 32 HOH HOH . G 5 HOH A 24 424 5 HOH HOH . G 5 HOH A 25 425 39 HOH HOH . G 5 HOH A 26 426 7 HOH HOH . G 5 HOH A 27 427 66 HOH HOH . G 5 HOH A 28 428 58 HOH HOH . G 5 HOH A 29 429 14 HOH HOH . G 5 HOH A 30 430 33 HOH HOH . G 5 HOH A 31 431 11 HOH HOH . G 5 HOH A 32 432 68 HOH HOH . G 5 HOH A 33 433 51 HOH HOH . G 5 HOH A 34 434 79 HOH HOH . G 5 HOH A 35 435 35 HOH HOH . G 5 HOH A 36 436 2 HOH HOH . G 5 HOH A 37 437 71 HOH HOH . G 5 HOH A 38 438 50 HOH HOH . G 5 HOH A 39 439 96 HOH HOH . G 5 HOH A 40 440 89 HOH HOH . G 5 HOH A 41 441 8 HOH HOH . G 5 HOH A 42 442 56 HOH HOH . G 5 HOH A 43 443 47 HOH HOH . G 5 HOH A 44 444 87 HOH HOH . G 5 HOH A 45 445 22 HOH HOH . G 5 HOH A 46 446 19 HOH HOH . G 5 HOH A 47 447 21 HOH HOH . G 5 HOH A 48 448 65 HOH HOH . G 5 HOH A 49 449 3 HOH HOH . G 5 HOH A 50 450 46 HOH HOH . G 5 HOH A 51 451 94 HOH HOH . G 5 HOH A 52 452 95 HOH HOH . G 5 HOH A 53 453 88 HOH HOH . G 5 HOH A 54 454 92 HOH HOH . G 5 HOH A 55 455 84 HOH HOH . G 5 HOH A 56 456 49 HOH HOH . G 5 HOH A 57 457 83 HOH HOH . G 5 HOH A 58 458 85 HOH HOH . G 5 HOH A 59 459 80 HOH HOH . G 5 HOH A 60 460 57 HOH HOH . H 5 HOH B 1 401 62 HOH HOH . H 5 HOH B 2 402 9 HOH HOH . H 5 HOH B 3 403 26 HOH HOH . H 5 HOH B 4 404 61 HOH HOH . H 5 HOH B 5 405 42 HOH HOH . H 5 HOH B 6 406 48 HOH HOH . H 5 HOH B 7 407 30 HOH HOH . H 5 HOH B 8 408 28 HOH HOH . H 5 HOH B 9 409 15 HOH HOH . H 5 HOH B 10 410 17 HOH HOH . H 5 HOH B 11 411 34 HOH HOH . H 5 HOH B 12 412 18 HOH HOH . H 5 HOH B 13 413 27 HOH HOH . H 5 HOH B 14 414 38 HOH HOH . H 5 HOH B 15 415 37 HOH HOH . H 5 HOH B 16 416 10 HOH HOH . H 5 HOH B 17 417 41 HOH HOH . H 5 HOH B 18 418 44 HOH HOH . H 5 HOH B 19 419 40 HOH HOH . H 5 HOH B 20 420 91 HOH HOH . H 5 HOH B 21 421 90 HOH HOH . H 5 HOH B 22 422 36 HOH HOH . H 5 HOH B 23 423 93 HOH HOH . H 5 HOH B 24 424 74 HOH HOH . H 5 HOH B 25 425 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . F 2 44.569 50.069 121.883 1 73.09 ? FE1 SF4 301 B 1 HETATM 2 FE FE2 SF4 . . . F 2 44.761 47.834 123.443 1 119.09 ? FE2 SF4 301 B 1 HETATM 3 FE FE3 SF4 . . . F 2 46.995 49.29 122.842 1 73.91 ? FE3 SF4 301 B 1 HETATM 4 FE FE4 SF4 . . . F 2 45.768 47.81 120.892 1 78.19 ? FE4 SF4 301 B 1 HETATM 5 S S1 SF4 . . . F 2 46.783 47.018 122.775 1 103.43 ? S1 SF4 301 B 1 HETATM 6 S S2 SF4 . . . F 2 46.534 49.944 120.712 1 63.23 ? S2 SF4 301 B 1 HETATM 7 S S3 SF4 . . . F 2 43.581 48.051 121.504 1 81.56 ? S3 SF4 301 B 1 HETATM 8 S S4 SF4 . . . F 2 45.206 49.986 124.065 1 110.2 ? S4 SF4 301 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #