data_5TGZ # _model_server_result.job_id 4DuCMED1GNA0xlifuZYfdQ _model_server_result.datetime_utc '2024-10-18 12:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5TGZ # _exptl.entry_id 5TGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 542.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[4-[2-(2,4-dichlorophenyl)-4-methyl-5-(piperidin-1-ylcarbamoyl)pyrazol-3-yl]phenyl]but-3-ynyl nitrate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.14 _cell.angle_gamma 90 _cell.entry_id 5TGZ _cell.length_a 116.56 _cell.length_b 52.63 _cell.length_c 143.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H25 Cl2 N5 O4' _chem_comp.formula_weight 542.414 _chem_comp.id ZDG _chem_comp.mon_nstd_flag . _chem_comp.name '4-[4-[2-(2,4-dichlorophenyl)-4-methyl-5-(piperidin-1-ylcarbamoyl)pyrazol-3-yl]phenyl]but-3-ynyl nitrate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLB CAW ZDG sing 563 n n CAW CAV ZDG doub 564 n y CAW CAX ZDG sing 565 n y CAV CAU ZDG sing 566 n y CAX CAY ZDG doub 567 n y CAU CAT ZDG doub 568 n y CAY CAT ZDG sing 569 n y CAY CLA ZDG sing 570 n n CAT NAP ZDG sing 571 n n CAD CAA ZDG sing 572 n n CAD CAE ZDG sing 573 n n CAA CAB ZDG trip 574 n n CAN CAM ZDG doub 575 n y CAN CAC ZDG sing 576 n y NAP NAQ ZDG sing 577 n y NAP CAO ZDG sing 578 n y CAB CAC ZDG sing 579 n n CAM CAL ZDG sing 580 n y CAC CAJ ZDG doub 581 n y NAQ CAR ZDG doub 582 n y CAL CAO ZDG sing 583 n n CAL CAK ZDG doub 584 n y CAJ CAK ZDG sing 585 n y CAO CAS ZDG doub 586 n y CAR CAS ZDG sing 587 n y CAR CBC ZDG sing 588 n n CAS CBB ZDG sing 589 n n NBD CBC ZDG sing 590 n n NBD NBF ZDG sing 591 n n CBK NBF ZDG sing 592 n n CBK CBJ ZDG sing 593 n n CBC OBE ZDG doub 594 n n NBF CBG ZDG sing 595 n n CBG CBH ZDG sing 596 n n CBJ CBI ZDG sing 597 n n CBI CBH ZDG sing 598 n n CAE H1 ZDG sing 599 n n CAE H2 ZDG sing 600 n n CAD H4 ZDG sing 601 n n CAD H5 ZDG sing 602 n n CAN H6 ZDG sing 603 n n CAM H7 ZDG sing 604 n n CAJ H8 ZDG sing 605 n n CAK H9 ZDG sing 606 n n CBB H10 ZDG sing 607 n n CBB H11 ZDG sing 608 n n CBB H12 ZDG sing 609 n n CAX H13 ZDG sing 610 n n CAV H14 ZDG sing 611 n n CAU H15 ZDG sing 612 n n NBD H16 ZDG sing 613 n n CBG H17 ZDG sing 614 n n CBG H18 ZDG sing 615 n n CBH H19 ZDG sing 616 n n CBH H20 ZDG sing 617 n n CBI H21 ZDG sing 618 n n CBI H22 ZDG sing 619 n n CBJ H23 ZDG sing 620 n n CBJ H24 ZDG sing 621 n n CBK H25 ZDG sing 622 n n CBK H26 ZDG sing 623 n n CAE O1 ZDG sing 624 n n O1 N1 ZDG sing 625 n n N1 O2 ZDG doub 626 n n N1 O3 ZDG sing 627 n n # _atom_sites.entry_id 5TGZ _atom_sites.fract_transf_matrix[1][1] 0.008579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZDG A 1 2001 2001 ZDG DRG . C 3 FMN A 1 2002 2002 FMN FMN . D 4 OLC A 1 2003 2003 OLC OLC . E 5 OLA A 1 2004 2004 OLA OLA . F 5 OLA A 1 2005 2005 OLA OLA . G 5 OLA A 1 2006 2006 OLA OLA . H 6 PEG A 1 2007 2007 PEG PEG . I 7 HOH A 1 2101 2008 HOH HOH . I 7 HOH A 2 2102 2014 HOH HOH . I 7 HOH A 3 2103 2010 HOH HOH . I 7 HOH A 4 2104 2009 HOH HOH . I 7 HOH A 5 2105 2012 HOH HOH . I 7 HOH A 6 2106 2013 HOH HOH . I 7 HOH A 7 2107 2015 HOH HOH . I 7 HOH A 8 2108 2011 HOH HOH . I 7 HOH A 9 2109 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAE ZDG . . . B 2 38.523 35.472 318.733 1 113.89 ? CAE ZDG 2001 A 1 HETATM 2 C CAD ZDG . . . B 2 38.396 34.52 317.542 1 109.63 ? CAD ZDG 2001 A 1 HETATM 3 C CAA ZDG . . . B 2 39.321 33.322 317.752 1 109.73 ? CAA ZDG 2001 A 1 HETATM 4 C CAB ZDG . . . B 2 39.986 32.35 317.916 1 109.81 ? CAB ZDG 2001 A 1 HETATM 5 C CAC ZDG . . . B 2 40.899 31.144 318.14 1 116.18 ? CAC ZDG 2001 A 1 HETATM 6 C CAN ZDG . . . B 2 40.495 29.873 317.767 1 119.56 ? CAN ZDG 2001 A 1 HETATM 7 C CAM ZDG . . . B 2 41.333 28.79 317.983 1 120.7 ? CAM ZDG 2001 A 1 HETATM 8 C CAJ ZDG . . . B 2 42.136 31.331 318.729 1 115.02 ? CAJ ZDG 2001 A 1 HETATM 9 C CAK ZDG . . . B 2 42.974 30.25 318.943 1 110.43 ? CAK ZDG 2001 A 1 HETATM 10 C CAL ZDG . . . B 2 42.574 28.98 318.571 1 115.95 ? CAL ZDG 2001 A 1 HETATM 11 C CAO ZDG . . . B 2 43.502 27.787 318.81 1 111.96 ? CAO ZDG 2001 A 1 HETATM 12 C CAS ZDG . . . B 2 43.682 27.126 319.993 1 110.58 ? CAS ZDG 2001 A 1 HETATM 13 C CBB ZDG . . . B 2 42.989 27.464 321.309 1 110.96 ? CBB ZDG 2001 A 1 HETATM 14 N NAP ZDG . . . B 2 44.272 27.204 317.897 1 118.27 ? NAP ZDG 2001 A 1 HETATM 15 C CAT ZDG . . . B 2 44.405 27.578 316.503 1 117.94 ? CAT ZDG 2001 A 1 HETATM 16 C CAY ZDG . . . B 2 45.468 28.377 316.108 1 130.61 ? CAY ZDG 2001 A 1 HETATM 17 CL CLA ZDG . . . B 2 46.67 28.954 317.297 1 137.28 ? CLA ZDG 2001 A 1 HETATM 18 C CAX ZDG . . . B 2 45.608 28.736 314.781 1 135.28 ? CAX ZDG 2001 A 1 HETATM 19 C CAW ZDG . . . B 2 44.691 28.301 313.841 1 139.76 ? CAW ZDG 2001 A 1 HETATM 20 CL CLB ZDG . . . B 2 44.882 28.769 312.129 1 153.02 ? CLB ZDG 2001 A 1 HETATM 21 C CAV ZDG . . . B 2 43.629 27.502 314.232 1 125.58 ? CAV ZDG 2001 A 1 HETATM 22 C CAU ZDG . . . B 2 43.483 27.137 315.563 1 113.54 ? CAU ZDG 2001 A 1 HETATM 23 N NAQ ZDG . . . B 2 44.952 26.165 318.51 1 117.87 ? NAQ ZDG 2001 A 1 HETATM 24 C CAR ZDG . . . B 2 44.589 26.121 319.784 1 119.91 ? CAR ZDG 2001 A 1 HETATM 25 C CBC ZDG . . . B 2 45.11 25.114 320.806 1 126.25 ? CBC ZDG 2001 A 1 HETATM 26 O OBE ZDG . . . B 2 45.554 25.486 321.839 1 132.79 ? OBE ZDG 2001 A 1 HETATM 27 N NBD ZDG . . . B 2 45.051 23.694 320.486 1 123.14 ? NBD ZDG 2001 A 1 HETATM 28 N NBF ZDG . . . B 2 45.471 22.799 321.298 1 116.89 ? NBF ZDG 2001 A 1 HETATM 29 C CBG ZDG . . . B 2 44.504 21.906 321.461 1 112.22 ? CBG ZDG 2001 A 1 HETATM 30 C CBH ZDG . . . B 2 44.877 20.729 322.363 1 111.75 ? CBH ZDG 2001 A 1 HETATM 31 C CBI ZDG . . . B 2 46.239 20.104 322.079 1 111.6 ? CBI ZDG 2001 A 1 HETATM 32 C CBJ ZDG . . . B 2 47.221 21.152 321.575 1 111.52 ? CBJ ZDG 2001 A 1 HETATM 33 C CBK ZDG . . . B 2 46.563 22.265 320.772 1 112.96 ? CBK ZDG 2001 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #