data_5TGZ # _model_server_result.job_id svRE6C8qYRhQxtfLGnQMtA _model_server_result.datetime_utc '2024-10-18 12:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2002}' # _entry.id 5TGZ # _exptl.entry_id 5TGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.14 _cell.angle_gamma 90 _cell.entry_id 5TGZ _cell.length_a 116.56 _cell.length_b 52.63 _cell.length_c 143.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5TGZ _atom_sites.fract_transf_matrix[1][1] 0.008579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZDG A 1 2001 2001 ZDG DRG . C 3 FMN A 1 2002 2002 FMN FMN . D 4 OLC A 1 2003 2003 OLC OLC . E 5 OLA A 1 2004 2004 OLA OLA . F 5 OLA A 1 2005 2005 OLA OLA . G 5 OLA A 1 2006 2006 OLA OLA . H 6 PEG A 1 2007 2007 PEG PEG . I 7 HOH A 1 2101 2008 HOH HOH . I 7 HOH A 2 2102 2014 HOH HOH . I 7 HOH A 3 2103 2010 HOH HOH . I 7 HOH A 4 2104 2009 HOH HOH . I 7 HOH A 5 2105 2012 HOH HOH . I 7 HOH A 6 2106 2013 HOH HOH . I 7 HOH A 7 2107 2015 HOH HOH . I 7 HOH A 8 2108 2011 HOH HOH . I 7 HOH A 9 2109 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 34.586 -5.244 263.951 1 64.04 ? N1 FMN 2002 A 1 HETATM 2 C C2 FMN . . . C 3 33.945 -4.45 263.019 1 67.88 ? C2 FMN 2002 A 1 HETATM 3 O O2 FMN . . . C 3 34.348 -3.309 262.798 1 75.81 ? O2 FMN 2002 A 1 HETATM 4 N N3 FMN . . . C 3 32.85 -4.932 262.336 1 45.29 ? N3 FMN 2002 A 1 HETATM 5 C C4 FMN . . . C 3 32.394 -6.212 262.58 1 66.2 ? C4 FMN 2002 A 1 HETATM 6 O O4 FMN . . . C 3 31.415 -6.631 261.963 1 64.74 ? O4 FMN 2002 A 1 HETATM 7 C C4A FMN . . . C 3 33.038 -7.02 263.516 1 68.58 ? C4A FMN 2002 A 1 HETATM 8 N N5 FMN . . . C 3 32.585 -8.303 263.761 1 64.25 ? N5 FMN 2002 A 1 HETATM 9 C C5A FMN . . . C 3 33.227 -9.099 264.694 1 72.22 ? C5A FMN 2002 A 1 HETATM 10 C C6 FMN . . . C 3 32.764 -10.391 264.936 1 75.36 ? C6 FMN 2002 A 1 HETATM 11 C C7 FMN . . . C 3 33.399 -11.207 265.869 1 67.02 ? C7 FMN 2002 A 1 HETATM 12 C C7M FMN . . . C 3 32.846 -12.589 266.078 1 64.39 ? C7M FMN 2002 A 1 HETATM 13 C C8 FMN . . . C 3 34.509 -10.726 266.563 1 63.06 ? C8 FMN 2002 A 1 HETATM 14 C C8M FMN . . . C 3 35.226 -11.57 267.576 1 56.94 ? C8M FMN 2002 A 1 HETATM 15 C C9 FMN . . . C 3 34.966 -9.435 266.322 1 59.03 ? C9 FMN 2002 A 1 HETATM 16 C C9A FMN . . . C 3 34.334 -8.614 265.387 1 68.48 ? C9A FMN 2002 A 1 HETATM 17 N N10 FMN . . . C 3 34.788 -7.325 265.136 1 68.16 ? N10 FMN 2002 A 1 HETATM 18 C C10 FMN . . . C 3 34.142 -6.53 264.205 1 64.89 ? C10 FMN 2002 A 1 HETATM 19 C C1' FMN . . . C 3 35.978 -6.765 265.862 1 69.04 ? C1' FMN 2002 A 1 HETATM 20 C C2' FMN . . . C 3 35.543 -6.168 267.192 1 64.29 ? C2' FMN 2002 A 1 HETATM 21 O O2' FMN . . . C 3 34.635 -5.105 266.964 1 85.46 ? O2' FMN 2002 A 1 HETATM 22 C C3' FMN . . . C 3 36.827 -5.776 267.896 1 48.94 ? C3' FMN 2002 A 1 HETATM 23 O O3' FMN . . . C 3 37.382 -6.986 268.38 1 62.3 ? O3' FMN 2002 A 1 HETATM 24 C C4' FMN . . . C 3 36.652 -4.73 268.992 1 55 ? C4' FMN 2002 A 1 HETATM 25 O O4' FMN . . . C 3 37.92 -4.193 269.233 1 69.11 ? O4' FMN 2002 A 1 HETATM 26 C C5' FMN . . . C 3 36.14 -5.293 270.307 1 51.33 ? C5' FMN 2002 A 1 HETATM 27 O O5' FMN . . . C 3 35.448 -4.303 271.038 1 63.68 ? O5' FMN 2002 A 1 HETATM 28 P P FMN . . . C 3 35.301 -4.409 272.645 1 74.07 ? P FMN 2002 A 1 HETATM 29 O O1P FMN . . . C 3 35.26 -3.018 273.239 1 55.76 ? O1P FMN 2002 A 1 HETATM 30 O O2P FMN . . . C 3 34.047 -5.175 273.007 1 62.65 ? O2P FMN 2002 A 1 HETATM 31 O O3P FMN . . . C 3 36.495 -5.12 273.234 1 66.27 ? O3P FMN 2002 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #