data_5TGZ # _model_server_result.job_id uyPVGFaaZTGG4_lpSSzrsQ _model_server_result.datetime_utc '2024-11-22 14:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5TGZ # _exptl.entry_id 5TGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.14 _cell.angle_gamma 90 _cell.entry_id 5TGZ _cell.length_a 116.56 _cell.length_b 52.63 _cell.length_c 143.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 163 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 170 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 344 n n C10 C9 OLC doub 345 n n C10 C11 OLC sing 346 n n C9 C8 OLC sing 347 n n C17 C16 OLC sing 348 z n C11 C12 OLC sing 349 n n C8 C7 OLC sing 350 n n C24 C22 OLC sing 351 n n C24 O25 OLC sing 352 n n C16 C15 OLC sing 353 n n C12 C13 OLC sing 354 n n C7 C6 OLC sing 355 n n C15 C14 OLC sing 356 n n C13 C14 OLC sing 357 n n C6 C5 OLC sing 358 n n C5 C4 OLC sing 359 n n C4 C3 OLC sing 360 n n C3 C2 OLC sing 361 n n C2 C1 OLC sing 362 n n C21 C22 OLC sing 363 n n C21 O20 OLC sing 364 n n C1 O19 OLC doub 365 n n C1 O20 OLC sing 366 n n C22 O23 OLC sing 367 n n C18 H18 OLC sing 368 n n C18 H18A OLC sing 369 n n C18 H18B OLC sing 370 n n C10 H10 OLC sing 371 n n C9 H9 OLC sing 372 n n C17 H17 OLC sing 373 n n C17 H17A OLC sing 374 n n C11 H11 OLC sing 375 n n C11 H11A OLC sing 376 n n C8 H8 OLC sing 377 n n C8 H8A OLC sing 378 n n C24 H24 OLC sing 379 n n C24 H24A OLC sing 380 n n C16 H16 OLC sing 381 n n C16 H16A OLC sing 382 n n C12 H12 OLC sing 383 n n C12 H12A OLC sing 384 n n C7 H7 OLC sing 385 n n C7 H7A OLC sing 386 n n C15 H15 OLC sing 387 n n C15 H15A OLC sing 388 n n C13 H13 OLC sing 389 n n C13 H13A OLC sing 390 n n C6 H6 OLC sing 391 n n C6 H6A OLC sing 392 n n C14 H14 OLC sing 393 n n C14 H14A OLC sing 394 n n C5 H5 OLC sing 395 n n C5 H5A OLC sing 396 n n C4 H4 OLC sing 397 n n C4 H4A OLC sing 398 n n C3 H3 OLC sing 399 n n C3 H3A OLC sing 400 n n C2 H2 OLC sing 401 n n C2 H2A OLC sing 402 n n C21 H21 OLC sing 403 n n C21 H21A OLC sing 404 n n C22 H22 OLC sing 405 n n O25 HO25 OLC sing 406 n n O23 HO23 OLC sing 407 n n # _atom_sites.entry_id 5TGZ _atom_sites.fract_transf_matrix[1][1] 0.008579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZDG A 1 2001 2001 ZDG DRG . C 3 FMN A 1 2002 2002 FMN FMN . D 4 OLC A 1 2003 2003 OLC OLC . E 5 OLA A 1 2004 2004 OLA OLA . F 5 OLA A 1 2005 2005 OLA OLA . G 5 OLA A 1 2006 2006 OLA OLA . H 6 PEG A 1 2007 2007 PEG PEG . I 7 HOH A 1 2101 2008 HOH HOH . I 7 HOH A 2 2102 2014 HOH HOH . I 7 HOH A 3 2103 2010 HOH HOH . I 7 HOH A 4 2104 2009 HOH HOH . I 7 HOH A 5 2105 2012 HOH HOH . I 7 HOH A 6 2106 2013 HOH HOH . I 7 HOH A 7 2107 2015 HOH HOH . I 7 HOH A 8 2108 2011 HOH HOH . I 7 HOH A 9 2109 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . D 4 29.462 47.035 298.3 1 95.71 ? C10 OLC 2003 A 1 HETATM 2 C C9 OLC . . . D 4 29.436 47.285 297.012 1 94.61 ? C9 OLC 2003 A 1 HETATM 3 C C11 OLC . . . D 4 30.674 46.87 299.147 1 91.67 ? C11 OLC 2003 A 1 HETATM 4 C C8 OLC . . . D 4 30.612 47.461 296.118 1 90.44 ? C8 OLC 2003 A 1 HETATM 5 C C24 OLC . . . D 4 31.543 50.052 284.601 1 93.72 ? C24 OLC 2003 A 1 HETATM 6 C C12 OLC . . . D 4 30.345 46.813 300.633 1 76.9 ? C12 OLC 2003 A 1 HETATM 7 C C7 OLC . . . D 4 30.478 46.68 294.816 1 88.38 ? C7 OLC 2003 A 1 HETATM 8 C C6 OLC . . . D 4 30.459 47.525 293.56 1 81.02 ? C6 OLC 2003 A 1 HETATM 9 C C5 OLC . . . D 4 31.735 47.457 292.757 1 83.84 ? C5 OLC 2003 A 1 HETATM 10 C C4 OLC . . . D 4 31.588 47.93 291.327 1 86.11 ? C4 OLC 2003 A 1 HETATM 11 C C3 OLC . . . D 4 30.249 47.619 290.695 1 80.03 ? C3 OLC 2003 A 1 HETATM 12 C C2 OLC . . . D 4 30.384 46.85 289.394 1 90.22 ? C2 OLC 2003 A 1 HETATM 13 C C21 OLC . . . D 4 30.801 49.506 286.927 1 117.37 ? C21 OLC 2003 A 1 HETATM 14 C C1 OLC . . . D 4 30.029 47.657 288.184 1 106.65 ? C1 OLC 2003 A 1 HETATM 15 C C22 OLC . . . D 4 31.964 49.606 285.981 1 105.5 ? C22 OLC 2003 A 1 HETATM 16 O O19 OLC . . . D 4 28.945 47.691 287.678 1 109.77 ? O19 OLC 2003 A 1 HETATM 17 O O25 OLC . . . D 4 32.666 50.469 283.847 1 91.67 ? O25 OLC 2003 A 1 HETATM 18 O O23 OLC . . . D 4 32.94 50.506 286.503 1 89.09 ? O23 OLC 2003 A 1 HETATM 19 O O20 OLC . . . D 4 31.077 48.337 287.728 1 111.75 ? O20 OLC 2003 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #