data_5TH4
#
_model_server_result.job_id            l7Iz_YMG82vbE41ZTTK2pQ 
_model_server_result.datetime_utc      '2024-11-21 17:07:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5th4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5TH4 
#
_exptl.entry_id    5TH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.65 
_cell.angle_gamma         90 
_cell.entry_id            5TH4 
_cell.length_a            42.2 
_cell.length_b            41.333 
_cell.length_c            72.159 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O8 BEW . A BEW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C S7 BEW . A BEW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 152 n n 
C1 C2 GOL sing 153 n n 
C1 H11 GOL sing 154 n n 
C1 H12 GOL sing 155 n n 
O1 HO1 GOL sing 156 n n 
C2 O2 GOL sing 157 n n 
C2 C3 GOL sing 158 n n 
C2 H2 GOL sing 159 n n 
O2 HO2 GOL sing 160 n n 
C3 O3 GOL sing 161 n n 
C3 H31 GOL sing 162 n n 
C3 H32 GOL sing 163 n n 
O3 HO3 GOL sing 164 n n 
#
_atom_sites.entry_id                     5TH4 
_atom_sites.fract_transf_matrix[1][1]    0.023697 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006193 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 BEW A 1 302 263 BEW BEW . 
D 4 GOL A 1 303 264 GOL GOL . 
E 5 DMS A 1 304 459 DMS DMS . 
F 6 HOH A 1 401 426 HOH HOH . 
F 6 HOH A 2 402 368 HOH HOH . 
F 6 HOH A 3 403 386 HOH HOH . 
F 6 HOH A 4 404 419 HOH HOH . 
F 6 HOH A 5 405 388 HOH HOH . 
F 6 HOH A 6 406 342 HOH HOH . 
F 6 HOH A 7 407 354 HOH HOH . 
F 6 HOH A 8 408 353 HOH HOH . 
F 6 HOH A 9 409 308 HOH HOH . 
F 6 HOH A 10 410 397 HOH HOH . 
F 6 HOH A 11 411 272 HOH HOH . 
F 6 HOH A 12 412 288 HOH HOH . 
F 6 HOH A 13 413 343 HOH HOH . 
F 6 HOH A 14 414 403 HOH HOH . 
F 6 HOH A 15 415 385 HOH HOH . 
F 6 HOH A 16 416 438 HOH HOH . 
F 6 HOH A 17 417 338 HOH HOH . 
F 6 HOH A 18 418 441 HOH HOH . 
F 6 HOH A 19 419 297 HOH HOH . 
F 6 HOH A 20 420 357 HOH HOH . 
F 6 HOH A 21 421 323 HOH HOH . 
F 6 HOH A 22 422 313 HOH HOH . 
F 6 HOH A 23 423 433 HOH HOH . 
F 6 HOH A 24 424 392 HOH HOH . 
F 6 HOH A 25 425 268 HOH HOH . 
F 6 HOH A 26 426 390 HOH HOH . 
F 6 HOH A 27 427 400 HOH HOH . 
F 6 HOH A 28 428 346 HOH HOH . 
F 6 HOH A 29 429 270 HOH HOH . 
F 6 HOH A 30 430 295 HOH HOH . 
F 6 HOH A 31 431 298 HOH HOH . 
F 6 HOH A 32 432 401 HOH HOH . 
F 6 HOH A 33 433 450 HOH HOH . 
F 6 HOH A 34 434 382 HOH HOH . 
F 6 HOH A 35 435 423 HOH HOH . 
F 6 HOH A 36 436 330 HOH HOH . 
F 6 HOH A 37 437 341 HOH HOH . 
F 6 HOH A 38 438 303 HOH HOH . 
F 6 HOH A 39 439 278 HOH HOH . 
F 6 HOH A 40 440 284 HOH HOH . 
F 6 HOH A 41 441 375 HOH HOH . 
F 6 HOH A 42 442 327 HOH HOH . 
F 6 HOH A 43 443 369 HOH HOH . 
F 6 HOH A 44 444 326 HOH HOH . 
F 6 HOH A 45 445 282 HOH HOH . 
F 6 HOH A 46 446 362 HOH HOH . 
F 6 HOH A 47 447 391 HOH HOH . 
F 6 HOH A 48 448 377 HOH HOH . 
F 6 HOH A 49 449 304 HOH HOH . 
F 6 HOH A 50 450 267 HOH HOH . 
F 6 HOH A 51 451 339 HOH HOH . 
F 6 HOH A 52 452 306 HOH HOH . 
F 6 HOH A 53 453 427 HOH HOH . 
F 6 HOH A 54 454 293 HOH HOH . 
F 6 HOH A 55 455 380 HOH HOH . 
F 6 HOH A 56 456 370 HOH HOH . 
F 6 HOH A 57 457 283 HOH HOH . 
F 6 HOH A 58 458 434 HOH HOH . 
F 6 HOH A 59 459 349 HOH HOH . 
F 6 HOH A 60 460 363 HOH HOH . 
F 6 HOH A 61 461 396 HOH HOH . 
F 6 HOH A 62 462 302 HOH HOH . 
F 6 HOH A 63 463 325 HOH HOH . 
F 6 HOH A 64 464 435 HOH HOH . 
F 6 HOH A 65 465 285 HOH HOH . 
F 6 HOH A 66 466 265 HOH HOH . 
F 6 HOH A 67 467 355 HOH HOH . 
F 6 HOH A 68 468 275 HOH HOH . 
F 6 HOH A 69 469 378 HOH HOH . 
F 6 HOH A 70 470 417 HOH HOH . 
F 6 HOH A 71 471 395 HOH HOH . 
F 6 HOH A 72 472 269 HOH HOH . 
F 6 HOH A 73 473 281 HOH HOH . 
F 6 HOH A 74 474 432 HOH HOH . 
F 6 HOH A 75 475 309 HOH HOH . 
F 6 HOH A 76 476 286 HOH HOH . 
F 6 HOH A 77 477 424 HOH HOH . 
F 6 HOH A 78 478 324 HOH HOH . 
F 6 HOH A 79 479 437 HOH HOH . 
F 6 HOH A 80 480 405 HOH HOH . 
F 6 HOH A 81 481 328 HOH HOH . 
F 6 HOH A 82 482 347 HOH HOH . 
F 6 HOH A 83 483 310 HOH HOH . 
F 6 HOH A 84 484 334 HOH HOH . 
F 6 HOH A 85 485 444 HOH HOH . 
F 6 HOH A 86 486 279 HOH HOH . 
F 6 HOH A 87 487 413 HOH HOH . 
F 6 HOH A 88 488 415 HOH HOH . 
F 6 HOH A 89 489 290 HOH HOH . 
F 6 HOH A 90 490 359 HOH HOH . 
F 6 HOH A 91 491 280 HOH HOH . 
F 6 HOH A 92 492 322 HOH HOH . 
F 6 HOH A 93 493 350 HOH HOH . 
F 6 HOH A 94 494 317 HOH HOH . 
F 6 HOH A 95 495 356 HOH HOH . 
F 6 HOH A 96 496 348 HOH HOH . 
F 6 HOH A 97 497 277 HOH HOH . 
F 6 HOH A 98 498 318 HOH HOH . 
F 6 HOH A 99 499 321 HOH HOH . 
F 6 HOH A 100 500 300 HOH HOH . 
F 6 HOH A 101 501 445 HOH HOH . 
F 6 HOH A 102 502 458 HOH HOH . 
F 6 HOH A 103 503 420 HOH HOH . 
F 6 HOH A 104 504 291 HOH HOH . 
F 6 HOH A 105 505 398 HOH HOH . 
F 6 HOH A 106 506 266 HOH HOH . 
F 6 HOH A 107 507 360 HOH HOH . 
F 6 HOH A 108 508 271 HOH HOH . 
F 6 HOH A 109 509 422 HOH HOH . 
F 6 HOH A 110 510 307 HOH HOH . 
F 6 HOH A 111 511 387 HOH HOH . 
F 6 HOH A 112 512 447 HOH HOH . 
F 6 HOH A 113 513 374 HOH HOH . 
F 6 HOH A 114 514 408 HOH HOH . 
F 6 HOH A 115 515 274 HOH HOH . 
F 6 HOH A 116 516 454 HOH HOH . 
F 6 HOH A 117 517 414 HOH HOH . 
F 6 HOH A 118 518 345 HOH HOH . 
F 6 HOH A 119 519 314 HOH HOH . 
F 6 HOH A 120 520 289 HOH HOH . 
F 6 HOH A 121 521 276 HOH HOH . 
F 6 HOH A 122 522 344 HOH HOH . 
F 6 HOH A 123 523 311 HOH HOH . 
F 6 HOH A 124 524 399 HOH HOH . 
F 6 HOH A 125 525 383 HOH HOH . 
F 6 HOH A 126 526 292 HOH HOH . 
F 6 HOH A 127 527 364 HOH HOH . 
F 6 HOH A 128 528 299 HOH HOH . 
F 6 HOH A 129 529 429 HOH HOH . 
F 6 HOH A 130 530 352 HOH HOH . 
F 6 HOH A 131 531 372 HOH HOH . 
F 6 HOH A 132 532 340 HOH HOH . 
F 6 HOH A 133 533 449 HOH HOH . 
F 6 HOH A 134 534 436 HOH HOH . 
F 6 HOH A 135 535 315 HOH HOH . 
F 6 HOH A 136 536 319 HOH HOH . 
F 6 HOH A 137 537 305 HOH HOH . 
F 6 HOH A 138 538 407 HOH HOH . 
F 6 HOH A 139 539 421 HOH HOH . 
F 6 HOH A 140 540 336 HOH HOH . 
F 6 HOH A 141 541 428 HOH HOH . 
F 6 HOH A 142 542 416 HOH HOH . 
F 6 HOH A 143 543 287 HOH HOH . 
F 6 HOH A 144 544 312 HOH HOH . 
F 6 HOH A 145 545 418 HOH HOH . 
F 6 HOH A 146 546 316 HOH HOH . 
F 6 HOH A 147 547 320 HOH HOH . 
F 6 HOH A 148 548 448 HOH HOH . 
F 6 HOH A 149 549 273 HOH HOH . 
F 6 HOH A 150 550 455 HOH HOH . 
F 6 HOH A 151 551 453 HOH HOH . 
F 6 HOH A 152 552 301 HOH HOH . 
F 6 HOH A 153 553 402 HOH HOH . 
F 6 HOH A 154 554 394 HOH HOH . 
F 6 HOH A 155 555 366 HOH HOH . 
F 6 HOH A 156 556 294 HOH HOH . 
F 6 HOH A 157 557 389 HOH HOH . 
F 6 HOH A 158 558 425 HOH HOH . 
F 6 HOH A 159 559 440 HOH HOH . 
F 6 HOH A 160 560 451 HOH HOH . 
F 6 HOH A 161 561 335 HOH HOH . 
F 6 HOH A 162 562 393 HOH HOH . 
F 6 HOH A 163 563 329 HOH HOH . 
F 6 HOH A 164 564 442 HOH HOH . 
F 6 HOH A 165 565 332 HOH HOH . 
F 6 HOH A 166 566 296 HOH HOH . 
F 6 HOH A 167 567 376 HOH HOH . 
F 6 HOH A 168 568 384 HOH HOH . 
F 6 HOH A 169 569 379 HOH HOH . 
F 6 HOH A 170 570 452 HOH HOH . 
F 6 HOH A 171 571 371 HOH HOH . 
F 6 HOH A 172 572 365 HOH HOH . 
F 6 HOH A 173 573 431 HOH HOH . 
F 6 HOH A 174 574 373 HOH HOH . 
F 6 HOH A 175 575 409 HOH HOH . 
F 6 HOH A 176 576 351 HOH HOH . 
F 6 HOH A 177 577 358 HOH HOH . 
F 6 HOH A 178 578 439 HOH HOH . 
F 6 HOH A 179 579 381 HOH HOH . 
F 6 HOH A 180 580 430 HOH HOH . 
F 6 HOH A 181 581 406 HOH HOH . 
F 6 HOH A 182 582 333 HOH HOH . 
F 6 HOH A 183 583 404 HOH HOH . 
F 6 HOH A 184 584 412 HOH HOH . 
F 6 HOH A 185 585 337 HOH HOH . 
F 6 HOH A 186 586 456 HOH HOH . 
F 6 HOH A 187 587 331 HOH HOH . 
F 6 HOH A 188 588 457 HOH HOH . 
F 6 HOH A 189 589 446 HOH HOH . 
F 6 HOH A 190 590 367 HOH HOH . 
F 6 HOH A 191 591 443 HOH HOH . 
F 6 HOH A 192 592 361 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 2.18 -10.643 14.422 1 28.53 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 2.28 -11.244 13.086 1 29.36 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 1.302 -11.571 15.136 1 19.14 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 1.502 -11.131 16.592 1 23.91 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 2.094 -12.915 15.12 1 30.4 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 1.646 -13.993 14.242 1 40.06 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#