data_5TH5 # _model_server_result.job_id chunRfb5G1TFJHpHXv6rNw _model_server_result.datetime_utc '2024-10-19 06:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5th5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":303}' # _entry.id 5TH5 # _exptl.entry_id 5TH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TH5 _cell.length_a 53.879 _cell.length_b 136.835 _cell.length_c 141.187 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N,O,P,Q,T 1 1 B,C,H,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 54 A CYS 34 1_555 E FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A SG CYS 58 A CYS 38 1_555 E FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 A SG CYS 61 A CYS 41 1_555 E FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 E FE2 SF4 . A SF4 301 1_555 G N MET . A MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc5 E FE2 SF4 . A SF4 301 1_555 G SD MET . A MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 E FE2 SF4 . A SF4 301 1_555 G O MET . A MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 B SG CYS 54 B CYS 34 1_555 H FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc8 B SG CYS 58 B CYS 38 1_555 H FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 B SG CYS 61 B CYS 41 1_555 H FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc10 H FE2 SF4 . B SF4 301 1_555 J N MET . B MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc11 H FE2 SF4 . B SF4 301 1_555 J SD MET . B MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc12 H FE2 SF4 . B SF4 301 1_555 J OXT MET . B MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc13 C SG CYS 54 C CYS 34 1_555 K FE4 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 C SG CYS 58 C CYS 38 1_555 K FE1 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc15 C SG CYS 61 C CYS 41 1_555 K FE3 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc16 K FE2 SF4 . C SF4 301 1_555 M OXT MET . C MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc17 K FE2 SF4 . C SF4 301 1_555 M SD MET . C MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc18 K FE2 SF4 . C SF4 301 1_555 M N MET . C MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc19 D SG CYS 54 D CYS 34 1_555 N FE4 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc20 D SG CYS 58 D CYS 38 1_555 N FE1 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc21 D SG CYS 61 D CYS 41 1_555 N FE3 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc22 N FE2 SF4 . D SF4 301 1_555 P O MET . D MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc23 N FE2 SF4 . D SF4 301 1_555 P SD MET . D MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc24 N FE2 SF4 . D SF4 301 1_555 P N MET . D MET 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 271 n n N H MET sing 272 n n N H2 MET sing 273 n n CA C MET sing 274 n n CA CB MET sing 275 n n CA HA MET sing 276 n n C O MET doub 277 n n C OXT MET sing 278 n n CB CG MET sing 279 n n CB HB2 MET sing 280 n n CB HB3 MET sing 281 n n CG SD MET sing 282 n n CG HG2 MET sing 283 n n CG HG3 MET sing 284 n n SD CE MET sing 285 n n CE HE1 MET sing 286 n n CE HE2 MET sing 287 n n CE HE3 MET sing 288 n n OXT HXT MET sing 289 n n # _atom_sites.entry_id 5TH5 _atom_sites.fract_transf_matrix[1][1] 0.01856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SF4 A 1 301 1 SF4 SF4 . F 3 7C5 A 1 302 1 7C5 LIG . G 4 MET A 1 303 1 MET MET . H 2 SF4 B 1 301 2 SF4 SF4 . I 3 7C5 B 1 302 2 7C5 LIG . J 4 MET B 1 303 2 MET MET . K 2 SF4 C 1 301 3 SF4 SF4 . L 3 7C5 C 1 302 3 7C5 LIG . M 4 MET C 1 303 3 MET MET . N 2 SF4 D 1 301 4 SF4 SF4 . O 3 7C5 D 1 302 4 7C5 LIG . P 4 MET D 1 303 4 MET MET . Q 5 HOH A 1 401 7 HOH HOH . Q 5 HOH A 2 402 115 HOH HOH . Q 5 HOH A 3 403 16 HOH HOH . Q 5 HOH A 4 404 64 HOH HOH . Q 5 HOH A 5 405 104 HOH HOH . Q 5 HOH A 6 406 1 HOH HOH . Q 5 HOH A 7 407 2 HOH HOH . Q 5 HOH A 8 408 22 HOH HOH . Q 5 HOH A 9 409 149 HOH HOH . Q 5 HOH A 10 410 51 HOH HOH . Q 5 HOH A 11 411 82 HOH HOH . Q 5 HOH A 12 412 91 HOH HOH . Q 5 HOH A 13 413 128 HOH HOH . Q 5 HOH A 14 414 65 HOH HOH . Q 5 HOH A 15 415 15 HOH HOH . Q 5 HOH A 16 416 167 HOH HOH . Q 5 HOH A 17 417 103 HOH HOH . Q 5 HOH A 18 418 95 HOH HOH . Q 5 HOH A 19 419 92 HOH HOH . Q 5 HOH A 20 420 3 HOH HOH . Q 5 HOH A 21 421 5 HOH HOH . Q 5 HOH A 22 422 108 HOH HOH . Q 5 HOH A 23 423 71 HOH HOH . Q 5 HOH A 24 424 177 HOH HOH . Q 5 HOH A 25 425 4 HOH HOH . Q 5 HOH A 26 426 74 HOH HOH . Q 5 HOH A 27 427 86 HOH HOH . Q 5 HOH A 28 428 57 HOH HOH . Q 5 HOH A 29 429 42 HOH HOH . Q 5 HOH A 30 430 159 HOH HOH . Q 5 HOH A 31 431 78 HOH HOH . Q 5 HOH A 32 432 20 HOH HOH . Q 5 HOH A 33 433 147 HOH HOH . Q 5 HOH A 34 434 143 HOH HOH . Q 5 HOH A 35 435 6 HOH HOH . Q 5 HOH A 36 436 110 HOH HOH . Q 5 HOH A 37 437 116 HOH HOH . Q 5 HOH A 38 438 129 HOH HOH . Q 5 HOH A 39 439 113 HOH HOH . Q 5 HOH A 40 440 70 HOH HOH . Q 5 HOH A 41 441 90 HOH HOH . Q 5 HOH A 42 442 31 HOH HOH . Q 5 HOH A 43 443 94 HOH HOH . Q 5 HOH A 44 444 165 HOH HOH . Q 5 HOH A 45 445 77 HOH HOH . Q 5 HOH A 46 446 19 HOH HOH . R 5 HOH B 1 401 137 HOH HOH . R 5 HOH B 2 402 188 HOH HOH . R 5 HOH B 3 403 36 HOH HOH . R 5 HOH B 4 404 107 HOH HOH . R 5 HOH B 5 405 140 HOH HOH . R 5 HOH B 6 406 9 HOH HOH . R 5 HOH B 7 407 179 HOH HOH . R 5 HOH B 8 408 29 HOH HOH . R 5 HOH B 9 409 114 HOH HOH . R 5 HOH B 10 410 24 HOH HOH . R 5 HOH B 11 411 80 HOH HOH . R 5 HOH B 12 412 44 HOH HOH . R 5 HOH B 13 413 138 HOH HOH . R 5 HOH B 14 414 93 HOH HOH . R 5 HOH B 15 415 187 HOH HOH . R 5 HOH B 16 416 152 HOH HOH . R 5 HOH B 17 417 69 HOH HOH . R 5 HOH B 18 418 55 HOH HOH . R 5 HOH B 19 419 89 HOH HOH . R 5 HOH B 20 420 84 HOH HOH . R 5 HOH B 21 421 8 HOH HOH . R 5 HOH B 22 422 161 HOH HOH . R 5 HOH B 23 423 120 HOH HOH . R 5 HOH B 24 424 63 HOH HOH . R 5 HOH B 25 425 10 HOH HOH . R 5 HOH B 26 426 13 HOH HOH . R 5 HOH B 27 427 96 HOH HOH . R 5 HOH B 28 428 85 HOH HOH . R 5 HOH B 29 429 148 HOH HOH . R 5 HOH B 30 430 156 HOH HOH . R 5 HOH B 31 431 38 HOH HOH . R 5 HOH B 32 432 169 HOH HOH . R 5 HOH B 33 433 178 HOH HOH . R 5 HOH B 34 434 11 HOH HOH . R 5 HOH B 35 435 101 HOH HOH . R 5 HOH B 36 436 98 HOH HOH . R 5 HOH B 37 437 171 HOH HOH . R 5 HOH B 38 438 28 HOH HOH . R 5 HOH B 39 439 144 HOH HOH . R 5 HOH B 40 440 61 HOH HOH . R 5 HOH B 41 441 163 HOH HOH . R 5 HOH B 42 442 158 HOH HOH . S 5 HOH C 1 401 81 HOH HOH . S 5 HOH C 2 402 173 HOH HOH . S 5 HOH C 3 403 67 HOH HOH . S 5 HOH C 4 404 117 HOH HOH . S 5 HOH C 5 405 83 HOH HOH . S 5 HOH C 6 406 45 HOH HOH . S 5 HOH C 7 407 12 HOH HOH . S 5 HOH C 8 408 142 HOH HOH . S 5 HOH C 9 409 155 HOH HOH . S 5 HOH C 10 410 25 HOH HOH . S 5 HOH C 11 411 153 HOH HOH . S 5 HOH C 12 412 41 HOH HOH . S 5 HOH C 13 413 135 HOH HOH . S 5 HOH C 14 414 176 HOH HOH . S 5 HOH C 15 415 73 HOH HOH . S 5 HOH C 16 416 32 HOH HOH . S 5 HOH C 17 417 54 HOH HOH . S 5 HOH C 18 418 39 HOH HOH . S 5 HOH C 19 419 182 HOH HOH . S 5 HOH C 20 420 150 HOH HOH . S 5 HOH C 21 421 30 HOH HOH . S 5 HOH C 22 422 146 HOH HOH . S 5 HOH C 23 423 122 HOH HOH . S 5 HOH C 24 424 97 HOH HOH . S 5 HOH C 25 425 47 HOH HOH . S 5 HOH C 26 426 60 HOH HOH . S 5 HOH C 27 427 119 HOH HOH . S 5 HOH C 28 428 14 HOH HOH . S 5 HOH C 29 429 127 HOH HOH . S 5 HOH C 30 430 17 HOH HOH . S 5 HOH C 31 431 106 HOH HOH . S 5 HOH C 32 432 180 HOH HOH . S 5 HOH C 33 433 88 HOH HOH . S 5 HOH C 34 434 125 HOH HOH . S 5 HOH C 35 435 126 HOH HOH . S 5 HOH C 36 436 21 HOH HOH . S 5 HOH C 37 437 99 HOH HOH . S 5 HOH C 38 438 105 HOH HOH . S 5 HOH C 39 439 100 HOH HOH . S 5 HOH C 40 440 123 HOH HOH . S 5 HOH C 41 441 26 HOH HOH . S 5 HOH C 42 442 34 HOH HOH . S 5 HOH C 43 443 23 HOH HOH . S 5 HOH C 44 444 134 HOH HOH . S 5 HOH C 45 445 118 HOH HOH . S 5 HOH C 46 446 145 HOH HOH . S 5 HOH C 47 447 27 HOH HOH . S 5 HOH C 48 448 76 HOH HOH . S 5 HOH C 49 449 181 HOH HOH . S 5 HOH C 50 450 46 HOH HOH . S 5 HOH C 51 451 111 HOH HOH . S 5 HOH C 52 452 33 HOH HOH . S 5 HOH C 53 453 184 HOH HOH . S 5 HOH C 54 454 141 HOH HOH . S 5 HOH C 55 455 130 HOH HOH . T 5 HOH D 1 401 50 HOH HOH . T 5 HOH D 2 402 59 HOH HOH . T 5 HOH D 3 403 112 HOH HOH . T 5 HOH D 4 404 66 HOH HOH . T 5 HOH D 5 405 183 HOH HOH . T 5 HOH D 6 406 72 HOH HOH . T 5 HOH D 7 407 87 HOH HOH . T 5 HOH D 8 408 18 HOH HOH . T 5 HOH D 9 409 139 HOH HOH . T 5 HOH D 10 410 185 HOH HOH . T 5 HOH D 11 411 170 HOH HOH . T 5 HOH D 12 412 157 HOH HOH . T 5 HOH D 13 413 186 HOH HOH . T 5 HOH D 14 414 162 HOH HOH . T 5 HOH D 15 415 68 HOH HOH . T 5 HOH D 16 416 136 HOH HOH . T 5 HOH D 17 417 166 HOH HOH . T 5 HOH D 18 418 37 HOH HOH . T 5 HOH D 19 419 175 HOH HOH . T 5 HOH D 20 420 62 HOH HOH . T 5 HOH D 21 421 174 HOH HOH . T 5 HOH D 22 422 160 HOH HOH . T 5 HOH D 23 423 75 HOH HOH . T 5 HOH D 24 424 53 HOH HOH . T 5 HOH D 25 425 52 HOH HOH . T 5 HOH D 26 426 79 HOH HOH . T 5 HOH D 27 427 58 HOH HOH . T 5 HOH D 28 428 109 HOH HOH . T 5 HOH D 29 429 40 HOH HOH . T 5 HOH D 30 430 132 HOH HOH . T 5 HOH D 31 431 154 HOH HOH . T 5 HOH D 32 432 49 HOH HOH . T 5 HOH D 33 433 151 HOH HOH . T 5 HOH D 34 434 43 HOH HOH . T 5 HOH D 35 435 164 HOH HOH . T 5 HOH D 36 436 172 HOH HOH . T 5 HOH D 37 437 56 HOH HOH . T 5 HOH D 38 438 168 HOH HOH . T 5 HOH D 39 439 102 HOH HOH . T 5 HOH D 40 440 121 HOH HOH . T 5 HOH D 41 441 131 HOH HOH . T 5 HOH D 42 442 48 HOH HOH . T 5 HOH D 43 443 124 HOH HOH . T 5 HOH D 44 444 35 HOH HOH . T 5 HOH D 45 445 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . M 4 -6.901 -4.67 56.664 1 28.88 ? N MET 303 C 1 HETATM 2 C CA MET . . . M 4 -6.097 -4.845 55.46 1 34.85 ? CA MET 303 C 1 HETATM 3 C C MET . . . M 4 -6.625 -5.985 54.595 1 26.82 ? C MET 303 C 1 HETATM 4 O O MET . . . M 4 -6.257 -6.116 53.428 1 27.11 ? O MET 303 C 1 HETATM 5 C CB MET . . . M 4 -4.63 -5.094 55.827 1 28.07 ? CB MET 303 C 1 HETATM 6 C CG MET . . . M 4 -4.426 -5.782 57.168 1 28.09 ? CG MET 303 C 1 HETATM 7 S SD MET . . . M 4 -5.368 -7.308 57.345 1 27.72 ? SD MET 303 C 1 HETATM 8 C CE MET . . . M 4 -4.805 -7.871 58.95 1 35.83 ? CE MET 303 C 1 HETATM 9 O OXT MET . . . M 4 -7.433 -6.798 55.042 1 26.73 ? OXT MET 303 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #