data_5TH7
#
_model_server_result.job_id            b3u2wc4zep4_kIChK-6ifA 
_model_server_result.datetime_utc      '2025-04-27 17:50:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5th7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5TH7 
#
_exptl.entry_id    5TH7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              387.476 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(3-{[6,7-dimethoxy-2-(pyrrolidin-1-yl)quinazolin-4-yl]amino}propyl)propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.23 
_cell.angle_gamma         90 
_cell.entry_id            5TH7 
_cell.length_a            83.15 
_cell.length_b            31.64 
_cell.length_c            114.89 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TH7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 79 A CYS 311 1_555 P CAA 7BY . B 7BY 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale2 C CAA 7BY . A 7BY 401 1_555 B SG CYS 79 B CYS 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
#
_chem_comp.formula           'C20 H29 N5 O3' 
_chem_comp.formula_weight    387.476 
_chem_comp.id                7BY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(3-{[6,7-dimethoxy-2-(pyrrolidin-1-yl)quinazolin-4-yl]amino}propyl)propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAB 7BY sing 1 n n 
CAB CAC 7BY sing 2 n n 
CAC NAE 7BY sing 3 n n 
CAC OAD 7BY doub 4 n n 
NAE CAF 7BY sing 5 n n 
CAF CAG 7BY sing 6 n n 
CAG CAH 7BY sing 7 n n 
CAH NAI 7BY sing 8 n n 
NAI C6 7BY sing 9 n n 
CAY CAZ 7BY sing 10 n n 
CAY NAX 7BY sing 11 n n 
C6 N1 7BY doub 12 n y 
C6 C5 7BY sing 13 n y 
N1 C2 7BY sing 14 n y 
CAZ CBA 7BY sing 15 n n 
NAX C2 7BY sing 16 n n 
NAX CBB 7BY sing 17 n n 
C2 N3 7BY doub 18 n y 
C5 CAV 7BY sing 19 n y 
C5 C4 7BY doub 20 n y 
CAV CAS 7BY doub 21 n y 
CAU OAT 7BY sing 22 n n 
CBA CBB 7BY sing 23 n n 
C4 N3 7BY sing 24 n y 
C4 CAO 7BY sing 25 n y 
CAS OAT 7BY sing 26 n n 
CAS CAP 7BY sing 27 n y 
CAO CAP 7BY doub 28 n y 
CAP OAQ 7BY sing 29 n n 
OAQ CAR 7BY sing 30 n n 
CAY H1 7BY sing 31 n n 
CAY H2 7BY sing 32 n n 
CAZ H3 7BY sing 33 n n 
CAZ H4 7BY sing 34 n n 
CBA H5 7BY sing 35 n n 
CBA H6 7BY sing 36 n n 
CBB H7 7BY sing 37 n n 
CBB H8 7BY sing 38 n n 
CAO H9 7BY sing 39 n n 
CAR H10 7BY sing 40 n n 
CAR H11 7BY sing 41 n n 
CAR H12 7BY sing 42 n n 
CAU H13 7BY sing 43 n n 
CAU H14 7BY sing 44 n n 
CAU H15 7BY sing 45 n n 
CAV H16 7BY sing 46 n n 
NAI H17 7BY sing 47 n n 
CAH H18 7BY sing 48 n n 
CAH H19 7BY sing 49 n n 
CAG H20 7BY sing 50 n n 
CAG H21 7BY sing 51 n n 
CAF H22 7BY sing 52 n n 
CAF H23 7BY sing 53 n n 
NAE H24 7BY sing 54 n n 
CAB H25 7BY sing 55 n n 
CAB H26 7BY sing 56 n n 
CAA H27 7BY sing 57 n n 
CAA H28 7BY sing 58 n n 
CAA H29 7BY sing 59 n n 
#
_atom_sites.entry_id                     5TH7 
_atom_sites.fract_transf_matrix[1][1]    0.012026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003274 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009021 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7BY A 1 401 1 7BY DRG . 
D 3 UNX A 1 402 1 UNX UNX . 
E 3 UNX A 1 403 7 UNX UNX . 
F 3 UNX A 1 404 8 UNX UNX . 
G 3 UNX A 1 405 9 UNX UNX . 
H 3 UNX A 1 406 10 UNX UNX . 
I 3 UNX A 1 407 12 UNX UNX . 
J 3 UNX A 1 408 14 UNX UNX . 
K 3 UNX A 1 409 17 UNX UNX . 
L 3 UNX A 1 410 18 UNX UNX . 
M 3 UNX A 1 411 19 UNX UNX . 
N 3 UNX A 1 412 20 UNX UNX . 
O 4 EDO B 1 401 1 EDO EDO . 
P 2 7BY B 1 402 2 7BY DRG . 
Q 3 UNX B 1 403 2 UNX UNX . 
R 3 UNX B 1 404 4 UNX UNX . 
S 3 UNX B 1 405 5 UNX UNX . 
T 3 UNX B 1 406 6 UNX UNX . 
U 3 UNX B 1 407 11 UNX UNX . 
V 3 UNX B 1 408 13 UNX UNX . 
W 3 UNX B 1 409 15 UNX UNX . 
X 3 UNX B 1 410 16 UNX UNX . 
Y 3 UNX B 1 411 21 UNX UNX . 
Z 3 UNX B 1 412 22 UNX UNX . 
AA 5 HOH A 1 501 48 HOH HOH . 
AA 5 HOH A 2 502 60 HOH HOH . 
AA 5 HOH A 3 503 62 HOH HOH . 
AA 5 HOH A 4 504 4 HOH HOH . 
AA 5 HOH A 5 505 44 HOH HOH . 
AA 5 HOH A 6 506 76 HOH HOH . 
AA 5 HOH A 7 507 73 HOH HOH . 
AA 5 HOH A 8 508 117 HOH HOH . 
AA 5 HOH A 9 509 79 HOH HOH . 
AA 5 HOH A 10 510 92 HOH HOH . 
AA 5 HOH A 11 511 12 HOH HOH . 
AA 5 HOH A 12 512 42 HOH HOH . 
AA 5 HOH A 13 513 50 HOH HOH . 
AA 5 HOH A 14 514 101 HOH HOH . 
AA 5 HOH A 15 515 55 HOH HOH . 
AA 5 HOH A 16 516 1 HOH HOH . 
AA 5 HOH A 17 517 47 HOH HOH . 
AA 5 HOH A 18 518 67 HOH HOH . 
AA 5 HOH A 19 519 100 HOH HOH . 
AA 5 HOH A 20 520 65 HOH HOH . 
AA 5 HOH A 21 521 57 HOH HOH . 
AA 5 HOH A 22 522 102 HOH HOH . 
AA 5 HOH A 23 523 99 HOH HOH . 
AA 5 HOH A 24 524 21 HOH HOH . 
AA 5 HOH A 25 525 14 HOH HOH . 
AA 5 HOH A 26 526 25 HOH HOH . 
AA 5 HOH A 27 527 63 HOH HOH . 
AA 5 HOH A 28 528 52 HOH HOH . 
AA 5 HOH A 29 529 70 HOH HOH . 
AA 5 HOH A 30 530 80 HOH HOH . 
AA 5 HOH A 31 531 19 HOH HOH . 
AA 5 HOH A 32 532 105 HOH HOH . 
AA 5 HOH A 33 533 74 HOH HOH . 
AA 5 HOH A 34 534 103 HOH HOH . 
AA 5 HOH A 35 535 51 HOH HOH . 
AA 5 HOH A 36 536 53 HOH HOH . 
AA 5 HOH A 37 537 94 HOH HOH . 
AA 5 HOH A 38 538 23 HOH HOH . 
AA 5 HOH A 39 539 26 HOH HOH . 
AA 5 HOH A 40 540 49 HOH HOH . 
AA 5 HOH A 41 541 106 HOH HOH . 
AA 5 HOH A 42 542 72 HOH HOH . 
AA 5 HOH A 43 543 59 HOH HOH . 
AA 5 HOH A 44 544 98 HOH HOH . 
AA 5 HOH A 45 545 18 HOH HOH . 
AA 5 HOH A 46 546 78 HOH HOH . 
AA 5 HOH A 47 547 54 HOH HOH . 
BA 5 HOH B 1 501 39 HOH HOH . 
BA 5 HOH B 2 502 86 HOH HOH . 
BA 5 HOH B 3 503 46 HOH HOH . 
BA 5 HOH B 4 504 7 HOH HOH . 
BA 5 HOH B 5 505 22 HOH HOH . 
BA 5 HOH B 6 506 17 HOH HOH . 
BA 5 HOH B 7 507 2 HOH HOH . 
BA 5 HOH B 8 508 90 HOH HOH . 
BA 5 HOH B 9 509 88 HOH HOH . 
BA 5 HOH B 10 510 37 HOH HOH . 
BA 5 HOH B 11 511 5 HOH HOH . 
BA 5 HOH B 12 512 43 HOH HOH . 
BA 5 HOH B 13 513 110 HOH HOH . 
BA 5 HOH B 14 514 56 HOH HOH . 
BA 5 HOH B 15 515 91 HOH HOH . 
BA 5 HOH B 16 516 97 HOH HOH . 
BA 5 HOH B 17 517 68 HOH HOH . 
BA 5 HOH B 18 518 112 HOH HOH . 
BA 5 HOH B 19 519 40 HOH HOH . 
BA 5 HOH B 20 520 6 HOH HOH . 
BA 5 HOH B 21 521 107 HOH HOH . 
BA 5 HOH B 22 522 82 HOH HOH . 
BA 5 HOH B 23 523 16 HOH HOH . 
BA 5 HOH B 24 524 24 HOH HOH . 
BA 5 HOH B 25 525 8 HOH HOH . 
BA 5 HOH B 26 526 115 HOH HOH . 
BA 5 HOH B 27 527 9 HOH HOH . 
BA 5 HOH B 28 528 13 HOH HOH . 
BA 5 HOH B 29 529 114 HOH HOH . 
BA 5 HOH B 30 530 33 HOH HOH . 
BA 5 HOH B 31 531 10 HOH HOH . 
BA 5 HOH B 32 532 116 HOH HOH . 
BA 5 HOH B 33 533 77 HOH HOH . 
BA 5 HOH B 34 534 89 HOH HOH . 
BA 5 HOH B 35 535 15 HOH HOH . 
BA 5 HOH B 36 536 111 HOH HOH . 
BA 5 HOH B 37 537 29 HOH HOH . 
BA 5 HOH B 38 538 34 HOH HOH . 
BA 5 HOH B 39 539 38 HOH HOH . 
BA 5 HOH B 40 540 41 HOH HOH . 
BA 5 HOH B 41 541 113 HOH HOH . 
BA 5 HOH B 42 542 109 HOH HOH . 
BA 5 HOH B 43 543 45 HOH HOH . 
BA 5 HOH B 44 544 31 HOH HOH . 
BA 5 HOH B 45 545 83 HOH HOH . 
BA 5 HOH B 46 546 27 HOH HOH . 
BA 5 HOH B 47 547 95 HOH HOH . 
BA 5 HOH B 48 548 69 HOH HOH . 
BA 5 HOH B 49 549 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7BY . . . C 2 -25.925 -2.042 149.85 1 18.88 ? C4 7BY 401 A 1 
HETATM 2 C C5 7BY . . . C 2 -26.572 -2.444 148.655 1 20.91 ? C5 7BY 401 A 1 
HETATM 3 C C6 7BY . . . C 2 -25.805 -2.292 147.445 1 19.56 ? C6 7BY 401 A 1 
HETATM 4 N N1 7BY . . . C 2 -24.579 -1.783 147.46 1 20.65 ? N1 7BY 401 A 1 
HETATM 5 N N3 7BY . . . C 2 -24.643 -1.547 149.859 1 17.36 ? N3 7BY 401 A 1 
HETATM 6 C CAY 7BY . . . C 2 -22.182 -0.539 147.335 1 22.03 ? CAY 7BY 401 A 1 
HETATM 7 C CAZ 7BY . . . C 2 -20.907 0.171 147.744 1 26.13 ? CAZ 7BY 401 A 1 
HETATM 8 C CBA 7BY . . . C 2 -20.667 -0.161 149.178 1 22.25 ? CBA 7BY 401 A 1 
HETATM 9 C CBB 7BY . . . C 2 -22.056 -0.352 149.75 1 23.07 ? CBB 7BY 401 A 1 
HETATM 10 N NAX 7BY . . . C 2 -22.815 -0.877 148.612 1 22.28 ? NAX 7BY 401 A 1 
HETATM 11 C C2 7BY . . . C 2 -24.051 -1.421 148.647 1 21.02 ? C2 7BY 401 A 1 
HETATM 12 C CAO 7BY . . . C 2 -26.629 -2.126 151.074 1 21.91 ? CAO 7BY 401 A 1 
HETATM 13 C CAP 7BY . . . C 2 -27.926 -2.567 151.105 1 23.43 ? CAP 7BY 401 A 1 
HETATM 14 O OAQ 7BY . . . C 2 -28.724 -2.598 152.218 1 27.39 ? OAQ 7BY 401 A 1 
HETATM 15 C CAR 7BY . . . C 2 -28.145 -2.225 153.477 1 23.31 ? CAR 7BY 401 A 1 
HETATM 16 C CAS 7BY . . . C 2 -28.568 -2.979 149.913 1 22.86 ? CAS 7BY 401 A 1 
HETATM 17 O OAT 7BY . . . C 2 -29.864 -3.387 150.072 1 26.3 ? OAT 7BY 401 A 1 
HETATM 18 C CAU 7BY . . . C 2 -30.54 -3.945 148.936 1 22.04 ? CAU 7BY 401 A 1 
HETATM 19 C CAV 7BY . . . C 2 -27.906 -2.924 148.72 1 23.17 ? CAV 7BY 401 A 1 
HETATM 20 N NAI 7BY . . . C 2 -26.364 -2.629 146.222 1 18.9 ? NAI 7BY 401 A 1 
HETATM 21 C CAH 7BY . . . C 2 -25.641 -2.531 144.962 1 19.57 ? CAH 7BY 401 A 1 
HETATM 22 C CAG 7BY . . . C 2 -25.901 -1.215 144.257 1 20.43 ? CAG 7BY 401 A 1 
HETATM 23 C CAF 7BY . . . C 2 -27.356 -1.023 143.929 1 21.52 ? CAF 7BY 401 A 1 
HETATM 24 N NAE 7BY . . . C 2 -27.65 0.241 143.264 1 25.85 ? NAE 7BY 401 A 1 
HETATM 25 C CAC 7BY . . . C 2 -28.88 0.755 143.256 1 25.98 ? CAC 7BY 401 A 1 
HETATM 26 O OAD 7BY . . . C 2 -29.796 0.265 143.916 1 24.49 ? OAD 7BY 401 A 1 
HETATM 27 C CAB 7BY . . . C 2 -29.085 1.958 142.373 1 25.76 ? CAB 7BY 401 A 1 
HETATM 28 C CAA 7BY . . . C 2 -30.34 1.853 141.495 1 26.2 ? CAA 7BY 401 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#