data_5THI # _model_server_result.job_id B7oo7iNEo_fZaNEsV9F_FA _model_server_result.datetime_utc '2024-11-24 19:19:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5thi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5THI # _exptl.entry_id 5THI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.2 _cell.angle_gamma 90 _cell.entry_id 5THI _cell.length_a 42.186 _cell.length_b 41.368 _cell.length_c 71.727 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5THI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 A O VAL 134 A VAL 135 1_555 E HG MBO . A MBO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc5 A O GLN 136 A GLN 137 1_555 E HG MBO . A MBO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C OA2 0TR . A 0TR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 C OA1 0TR . A 0TR 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 5THI _atom_sites.fract_transf_matrix[1][1] 0.023705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005997 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 0TR A 1 302 480 0TR 0TR . D 4 CIT A 1 303 481 CIT CIT . E 5 MBO A 1 304 482 MBO MBO . F 6 GOL A 1 305 483 GOL GOL . G 6 GOL A 1 306 484 GOL GOL . H 7 HOH A 1 401 410 HOH HOH . H 7 HOH A 2 402 435 HOH HOH . H 7 HOH A 3 403 414 HOH HOH . H 7 HOH A 4 404 425 HOH HOH . H 7 HOH A 5 405 427 HOH HOH . H 7 HOH A 6 406 298 HOH HOH . H 7 HOH A 7 407 461 HOH HOH . H 7 HOH A 8 408 446 HOH HOH . H 7 HOH A 9 409 423 HOH HOH . H 7 HOH A 10 410 451 HOH HOH . H 7 HOH A 11 411 466 HOH HOH . H 7 HOH A 12 412 301 HOH HOH . H 7 HOH A 13 413 478 HOH HOH . H 7 HOH A 14 414 384 HOH HOH . H 7 HOH A 15 415 436 HOH HOH . H 7 HOH A 16 416 432 HOH HOH . H 7 HOH A 17 417 265 HOH HOH . H 7 HOH A 18 418 337 HOH HOH . H 7 HOH A 19 419 338 HOH HOH . H 7 HOH A 20 420 406 HOH HOH . H 7 HOH A 21 421 363 HOH HOH . H 7 HOH A 22 422 465 HOH HOH . H 7 HOH A 23 423 374 HOH HOH . H 7 HOH A 24 424 357 HOH HOH . H 7 HOH A 25 425 409 HOH HOH . H 7 HOH A 26 426 454 HOH HOH . H 7 HOH A 27 427 444 HOH HOH . H 7 HOH A 28 428 268 HOH HOH . H 7 HOH A 29 429 429 HOH HOH . H 7 HOH A 30 430 320 HOH HOH . H 7 HOH A 31 431 341 HOH HOH . H 7 HOH A 32 432 391 HOH HOH . H 7 HOH A 33 433 352 HOH HOH . H 7 HOH A 34 434 464 HOH HOH . H 7 HOH A 35 435 319 HOH HOH . H 7 HOH A 36 436 267 HOH HOH . H 7 HOH A 37 437 405 HOH HOH . H 7 HOH A 38 438 310 HOH HOH . H 7 HOH A 39 439 275 HOH HOH . H 7 HOH A 40 440 448 HOH HOH . H 7 HOH A 41 441 311 HOH HOH . H 7 HOH A 42 442 340 HOH HOH . H 7 HOH A 43 443 365 HOH HOH . H 7 HOH A 44 444 393 HOH HOH . H 7 HOH A 45 445 354 HOH HOH . H 7 HOH A 46 446 284 HOH HOH . H 7 HOH A 47 447 358 HOH HOH . H 7 HOH A 48 448 278 HOH HOH . H 7 HOH A 49 449 336 HOH HOH . H 7 HOH A 50 450 331 HOH HOH . H 7 HOH A 51 451 428 HOH HOH . H 7 HOH A 52 452 371 HOH HOH . H 7 HOH A 53 453 329 HOH HOH . H 7 HOH A 54 454 389 HOH HOH . H 7 HOH A 55 455 272 HOH HOH . H 7 HOH A 56 456 277 HOH HOH . H 7 HOH A 57 457 356 HOH HOH . H 7 HOH A 58 458 372 HOH HOH . H 7 HOH A 59 459 388 HOH HOH . H 7 HOH A 60 460 376 HOH HOH . H 7 HOH A 61 461 355 HOH HOH . H 7 HOH A 62 462 375 HOH HOH . H 7 HOH A 63 463 270 HOH HOH . H 7 HOH A 64 464 403 HOH HOH . H 7 HOH A 65 465 274 HOH HOH . H 7 HOH A 66 466 322 HOH HOH . H 7 HOH A 67 467 273 HOH HOH . H 7 HOH A 68 468 433 HOH HOH . H 7 HOH A 69 469 308 HOH HOH . H 7 HOH A 70 470 397 HOH HOH . H 7 HOH A 71 471 369 HOH HOH . H 7 HOH A 72 472 314 HOH HOH . H 7 HOH A 73 473 333 HOH HOH . H 7 HOH A 74 474 313 HOH HOH . H 7 HOH A 75 475 271 HOH HOH . H 7 HOH A 76 476 438 HOH HOH . H 7 HOH A 77 477 458 HOH HOH . H 7 HOH A 78 478 328 HOH HOH . H 7 HOH A 79 479 445 HOH HOH . H 7 HOH A 80 480 385 HOH HOH . H 7 HOH A 81 481 457 HOH HOH . H 7 HOH A 82 482 416 HOH HOH . H 7 HOH A 83 483 344 HOH HOH . H 7 HOH A 84 484 315 HOH HOH . H 7 HOH A 85 485 413 HOH HOH . H 7 HOH A 86 486 362 HOH HOH . H 7 HOH A 87 487 473 HOH HOH . H 7 HOH A 88 488 417 HOH HOH . H 7 HOH A 89 489 312 HOH HOH . H 7 HOH A 90 490 442 HOH HOH . H 7 HOH A 91 491 381 HOH HOH . H 7 HOH A 92 492 407 HOH HOH . H 7 HOH A 93 493 426 HOH HOH . H 7 HOH A 94 494 379 HOH HOH . H 7 HOH A 95 495 299 HOH HOH . H 7 HOH A 96 496 281 HOH HOH . H 7 HOH A 97 497 326 HOH HOH . H 7 HOH A 98 498 306 HOH HOH . H 7 HOH A 99 499 367 HOH HOH . H 7 HOH A 100 500 415 HOH HOH . H 7 HOH A 101 501 390 HOH HOH . H 7 HOH A 102 502 332 HOH HOH . H 7 HOH A 103 503 283 HOH HOH . H 7 HOH A 104 504 449 HOH HOH . H 7 HOH A 105 505 421 HOH HOH . H 7 HOH A 106 506 285 HOH HOH . H 7 HOH A 107 507 305 HOH HOH . H 7 HOH A 108 508 419 HOH HOH . H 7 HOH A 109 509 364 HOH HOH . H 7 HOH A 110 510 309 HOH HOH . H 7 HOH A 111 511 386 HOH HOH . H 7 HOH A 112 512 286 HOH HOH . H 7 HOH A 113 513 346 HOH HOH . H 7 HOH A 114 514 348 HOH HOH . H 7 HOH A 115 515 359 HOH HOH . H 7 HOH A 116 516 351 HOH HOH . H 7 HOH A 117 517 345 HOH HOH . H 7 HOH A 118 518 269 HOH HOH . H 7 HOH A 119 519 440 HOH HOH . H 7 HOH A 120 520 316 HOH HOH . H 7 HOH A 121 521 339 HOH HOH . H 7 HOH A 122 522 378 HOH HOH . H 7 HOH A 123 523 288 HOH HOH . H 7 HOH A 124 524 307 HOH HOH . H 7 HOH A 125 525 334 HOH HOH . H 7 HOH A 126 526 318 HOH HOH . H 7 HOH A 127 527 467 HOH HOH . H 7 HOH A 128 528 411 HOH HOH . H 7 HOH A 129 529 330 HOH HOH . H 7 HOH A 130 530 287 HOH HOH . H 7 HOH A 131 531 302 HOH HOH . H 7 HOH A 132 532 479 HOH HOH . H 7 HOH A 133 533 279 HOH HOH . H 7 HOH A 134 534 408 HOH HOH . H 7 HOH A 135 535 470 HOH HOH . H 7 HOH A 136 536 321 HOH HOH . H 7 HOH A 137 537 476 HOH HOH . H 7 HOH A 138 538 325 HOH HOH . H 7 HOH A 139 539 347 HOH HOH . H 7 HOH A 140 540 370 HOH HOH . H 7 HOH A 141 541 282 HOH HOH . H 7 HOH A 142 542 455 HOH HOH . H 7 HOH A 143 543 424 HOH HOH . H 7 HOH A 144 544 276 HOH HOH . H 7 HOH A 145 545 373 HOH HOH . H 7 HOH A 146 546 327 HOH HOH . H 7 HOH A 147 547 387 HOH HOH . H 7 HOH A 148 548 366 HOH HOH . H 7 HOH A 149 549 469 HOH HOH . H 7 HOH A 150 550 460 HOH HOH . H 7 HOH A 151 551 396 HOH HOH . H 7 HOH A 152 552 317 HOH HOH . H 7 HOH A 153 553 456 HOH HOH . H 7 HOH A 154 554 420 HOH HOH . H 7 HOH A 155 555 349 HOH HOH . H 7 HOH A 156 556 343 HOH HOH . H 7 HOH A 157 557 300 HOH HOH . H 7 HOH A 158 558 394 HOH HOH . H 7 HOH A 159 559 304 HOH HOH . H 7 HOH A 160 560 395 HOH HOH . H 7 HOH A 161 561 380 HOH HOH . H 7 HOH A 162 562 368 HOH HOH . H 7 HOH A 163 563 303 HOH HOH . H 7 HOH A 164 564 263 HOH HOH . H 7 HOH A 165 565 280 HOH HOH . H 7 HOH A 166 566 361 HOH HOH . H 7 HOH A 167 567 462 HOH HOH . H 7 HOH A 168 568 392 HOH HOH . H 7 HOH A 169 569 383 HOH HOH . H 7 HOH A 170 570 266 HOH HOH . H 7 HOH A 171 571 324 HOH HOH . H 7 HOH A 172 572 264 HOH HOH . H 7 HOH A 173 573 434 HOH HOH . H 7 HOH A 174 574 418 HOH HOH . H 7 HOH A 175 575 398 HOH HOH . H 7 HOH A 176 576 401 HOH HOH . H 7 HOH A 177 577 477 HOH HOH . H 7 HOH A 178 578 452 HOH HOH . H 7 HOH A 179 579 472 HOH HOH . H 7 HOH A 180 580 468 HOH HOH . H 7 HOH A 181 581 412 HOH HOH . H 7 HOH A 182 582 463 HOH HOH . H 7 HOH A 183 583 353 HOH HOH . H 7 HOH A 184 584 453 HOH HOH . H 7 HOH A 185 585 431 HOH HOH . H 7 HOH A 186 586 471 HOH HOH . H 7 HOH A 187 587 400 HOH HOH . H 7 HOH A 188 588 323 HOH HOH . H 7 HOH A 189 589 475 HOH HOH . H 7 HOH A 190 590 360 HOH HOH . H 7 HOH A 191 591 335 HOH HOH . H 7 HOH A 192 592 443 HOH HOH . H 7 HOH A 193 593 399 HOH HOH . H 7 HOH A 194 594 485 HOH HOH . H 7 HOH A 195 595 377 HOH HOH . H 7 HOH A 196 596 474 HOH HOH . H 7 HOH A 197 597 404 HOH HOH . H 7 HOH A 198 598 459 HOH HOH . H 7 HOH A 199 599 342 HOH HOH . H 7 HOH A 200 600 450 HOH HOH . H 7 HOH A 201 601 382 HOH HOH . H 7 HOH A 202 602 437 HOH HOH . H 7 HOH A 203 603 350 HOH HOH . H 7 HOH A 204 604 441 HOH HOH . H 7 HOH A 205 605 422 HOH HOH . H 7 HOH A 206 606 447 HOH HOH . H 7 HOH A 207 607 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 2.293 -13.038 14.971 1 35.71 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 6 1.623 -14.158 14.436 1 39.75 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 6 1.628 -11.686 14.515 1 26.73 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 6 2.185 -11.324 13.174 1 25.95 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 6 2.143 -10.657 15.399 1 32.48 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 6 1.604 -11.003 16.7 1 26.95 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #