data_5THN # _model_server_result.job_id yUs3qHBt7GSB1esYwas_BA _model_server_result.datetime_utc '2024-11-21 23:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5thn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5THN # _exptl.entry_id 5THN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.23 _cell.angle_gamma 90 _cell.entry_id 5THN _cell.length_a 41.982 _cell.length_b 41.108 _cell.length_c 71.67 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5THN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 A O VAL 134 A VAL 135 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc5 A O GLN 136 A GLN 137 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 F SAH 7CZ . A 7CZ 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 F OAI 7CZ . A 7CZ 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 5THN _atom_sites.fract_transf_matrix[1][1] 0.02382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 MBO A 1 302 483 MBO MBO . D 4 CIT A 1 303 484 CIT CIT . E 5 GOL A 1 304 485 GOL GOL . F 6 7CZ A 1 305 486 7CZ DRG . G 7 HOH A 1 401 305 HOH HOH . G 7 HOH A 2 402 459 HOH HOH . G 7 HOH A 3 403 406 HOH HOH . G 7 HOH A 4 404 436 HOH HOH . G 7 HOH A 5 405 471 HOH HOH . G 7 HOH A 6 406 419 HOH HOH . G 7 HOH A 7 407 392 HOH HOH . G 7 HOH A 8 408 393 HOH HOH . G 7 HOH A 9 409 351 HOH HOH . G 7 HOH A 10 410 403 HOH HOH . G 7 HOH A 11 411 396 HOH HOH . G 7 HOH A 12 412 360 HOH HOH . G 7 HOH A 13 413 272 HOH HOH . G 7 HOH A 14 414 303 HOH HOH . G 7 HOH A 15 415 394 HOH HOH . G 7 HOH A 16 416 437 HOH HOH . G 7 HOH A 17 417 328 HOH HOH . G 7 HOH A 18 418 339 HOH HOH . G 7 HOH A 19 419 411 HOH HOH . G 7 HOH A 20 420 379 HOH HOH . G 7 HOH A 21 421 427 HOH HOH . G 7 HOH A 22 422 413 HOH HOH . G 7 HOH A 23 423 361 HOH HOH . G 7 HOH A 24 424 462 HOH HOH . G 7 HOH A 25 425 327 HOH HOH . G 7 HOH A 26 426 430 HOH HOH . G 7 HOH A 27 427 363 HOH HOH . G 7 HOH A 28 428 295 HOH HOH . G 7 HOH A 29 429 270 HOH HOH . G 7 HOH A 30 430 369 HOH HOH . G 7 HOH A 31 431 449 HOH HOH . G 7 HOH A 32 432 438 HOH HOH . G 7 HOH A 33 433 304 HOH HOH . G 7 HOH A 34 434 461 HOH HOH . G 7 HOH A 35 435 454 HOH HOH . G 7 HOH A 36 436 435 HOH HOH . G 7 HOH A 37 437 451 HOH HOH . G 7 HOH A 38 438 302 HOH HOH . G 7 HOH A 39 439 405 HOH HOH . G 7 HOH A 40 440 320 HOH HOH . G 7 HOH A 41 441 324 HOH HOH . G 7 HOH A 42 442 377 HOH HOH . G 7 HOH A 43 443 344 HOH HOH . G 7 HOH A 44 444 264 HOH HOH . G 7 HOH A 45 445 425 HOH HOH . G 7 HOH A 46 446 299 HOH HOH . G 7 HOH A 47 447 401 HOH HOH . G 7 HOH A 48 448 383 HOH HOH . G 7 HOH A 49 449 298 HOH HOH . G 7 HOH A 50 450 265 HOH HOH . G 7 HOH A 51 451 267 HOH HOH . G 7 HOH A 52 452 349 HOH HOH . G 7 HOH A 53 453 354 HOH HOH . G 7 HOH A 54 454 382 HOH HOH . G 7 HOH A 55 455 465 HOH HOH . G 7 HOH A 56 456 442 HOH HOH . G 7 HOH A 57 457 336 HOH HOH . G 7 HOH A 58 458 423 HOH HOH . G 7 HOH A 59 459 346 HOH HOH . G 7 HOH A 60 460 341 HOH HOH . G 7 HOH A 61 461 429 HOH HOH . G 7 HOH A 62 462 421 HOH HOH . G 7 HOH A 63 463 271 HOH HOH . G 7 HOH A 64 464 329 HOH HOH . G 7 HOH A 65 465 311 HOH HOH . G 7 HOH A 66 466 322 HOH HOH . G 7 HOH A 67 467 343 HOH HOH . G 7 HOH A 68 468 384 HOH HOH . G 7 HOH A 69 469 292 HOH HOH . G 7 HOH A 70 470 450 HOH HOH . G 7 HOH A 71 471 289 HOH HOH . G 7 HOH A 72 472 476 HOH HOH . G 7 HOH A 73 473 268 HOH HOH . G 7 HOH A 74 474 443 HOH HOH . G 7 HOH A 75 475 331 HOH HOH . G 7 HOH A 76 476 287 HOH HOH . G 7 HOH A 77 477 278 HOH HOH . G 7 HOH A 78 478 338 HOH HOH . G 7 HOH A 79 479 402 HOH HOH . G 7 HOH A 80 480 266 HOH HOH . G 7 HOH A 81 481 274 HOH HOH . G 7 HOH A 82 482 417 HOH HOH . G 7 HOH A 83 483 317 HOH HOH . G 7 HOH A 84 484 412 HOH HOH . G 7 HOH A 85 485 277 HOH HOH . G 7 HOH A 86 486 463 HOH HOH . G 7 HOH A 87 487 315 HOH HOH . G 7 HOH A 88 488 391 HOH HOH . G 7 HOH A 89 489 397 HOH HOH . G 7 HOH A 90 490 281 HOH HOH . G 7 HOH A 91 491 455 HOH HOH . G 7 HOH A 92 492 269 HOH HOH . G 7 HOH A 93 493 276 HOH HOH . G 7 HOH A 94 494 313 HOH HOH . G 7 HOH A 95 495 375 HOH HOH . G 7 HOH A 96 496 333 HOH HOH . G 7 HOH A 97 497 283 HOH HOH . G 7 HOH A 98 498 367 HOH HOH . G 7 HOH A 99 499 374 HOH HOH . G 7 HOH A 100 500 286 HOH HOH . G 7 HOH A 101 501 482 HOH HOH . G 7 HOH A 102 502 275 HOH HOH . G 7 HOH A 103 503 457 HOH HOH . G 7 HOH A 104 504 407 HOH HOH . G 7 HOH A 105 505 400 HOH HOH . G 7 HOH A 106 506 280 HOH HOH . G 7 HOH A 107 507 296 HOH HOH . G 7 HOH A 108 508 284 HOH HOH . G 7 HOH A 109 509 420 HOH HOH . G 7 HOH A 110 510 301 HOH HOH . G 7 HOH A 111 511 310 HOH HOH . G 7 HOH A 112 512 386 HOH HOH . G 7 HOH A 113 513 422 HOH HOH . G 7 HOH A 114 514 440 HOH HOH . G 7 HOH A 115 515 285 HOH HOH . G 7 HOH A 116 516 387 HOH HOH . G 7 HOH A 117 517 358 HOH HOH . G 7 HOH A 118 518 448 HOH HOH . G 7 HOH A 119 519 316 HOH HOH . G 7 HOH A 120 520 330 HOH HOH . G 7 HOH A 121 521 364 HOH HOH . G 7 HOH A 122 522 306 HOH HOH . G 7 HOH A 123 523 380 HOH HOH . G 7 HOH A 124 524 359 HOH HOH . G 7 HOH A 125 525 337 HOH HOH . G 7 HOH A 126 526 481 HOH HOH . G 7 HOH A 127 527 335 HOH HOH . G 7 HOH A 128 528 399 HOH HOH . G 7 HOH A 129 529 446 HOH HOH . G 7 HOH A 130 530 410 HOH HOH . G 7 HOH A 131 531 444 HOH HOH . G 7 HOH A 132 532 290 HOH HOH . G 7 HOH A 133 533 362 HOH HOH . G 7 HOH A 134 534 373 HOH HOH . G 7 HOH A 135 535 447 HOH HOH . G 7 HOH A 136 536 432 HOH HOH . G 7 HOH A 137 537 366 HOH HOH . G 7 HOH A 138 538 348 HOH HOH . G 7 HOH A 139 539 356 HOH HOH . G 7 HOH A 140 540 332 HOH HOH . G 7 HOH A 141 541 381 HOH HOH . G 7 HOH A 142 542 294 HOH HOH . G 7 HOH A 143 543 439 HOH HOH . G 7 HOH A 144 544 323 HOH HOH . G 7 HOH A 145 545 460 HOH HOH . G 7 HOH A 146 546 357 HOH HOH . G 7 HOH A 147 547 288 HOH HOH . G 7 HOH A 148 548 279 HOH HOH . G 7 HOH A 149 549 355 HOH HOH . G 7 HOH A 150 550 365 HOH HOH . G 7 HOH A 151 551 389 HOH HOH . G 7 HOH A 152 552 325 HOH HOH . G 7 HOH A 153 553 312 HOH HOH . G 7 HOH A 154 554 297 HOH HOH . G 7 HOH A 155 555 385 HOH HOH . G 7 HOH A 156 556 293 HOH HOH . G 7 HOH A 157 557 473 HOH HOH . G 7 HOH A 158 558 347 HOH HOH . G 7 HOH A 159 559 371 HOH HOH . G 7 HOH A 160 560 308 HOH HOH . G 7 HOH A 161 561 300 HOH HOH . G 7 HOH A 162 562 345 HOH HOH . G 7 HOH A 163 563 378 HOH HOH . G 7 HOH A 164 564 318 HOH HOH . G 7 HOH A 165 565 431 HOH HOH . G 7 HOH A 166 566 466 HOH HOH . G 7 HOH A 167 567 309 HOH HOH . G 7 HOH A 168 568 428 HOH HOH . G 7 HOH A 169 569 263 HOH HOH . G 7 HOH A 170 570 441 HOH HOH . G 7 HOH A 171 571 370 HOH HOH . G 7 HOH A 172 572 404 HOH HOH . G 7 HOH A 173 573 414 HOH HOH . G 7 HOH A 174 574 480 HOH HOH . G 7 HOH A 175 575 452 HOH HOH . G 7 HOH A 176 576 388 HOH HOH . G 7 HOH A 177 577 368 HOH HOH . G 7 HOH A 178 578 467 HOH HOH . G 7 HOH A 179 579 470 HOH HOH . G 7 HOH A 180 580 433 HOH HOH . G 7 HOH A 181 581 408 HOH HOH . G 7 HOH A 182 582 273 HOH HOH . G 7 HOH A 183 583 468 HOH HOH . G 7 HOH A 184 584 453 HOH HOH . G 7 HOH A 185 585 307 HOH HOH . G 7 HOH A 186 586 456 HOH HOH . G 7 HOH A 187 587 350 HOH HOH . G 7 HOH A 188 588 321 HOH HOH . G 7 HOH A 189 589 424 HOH HOH . G 7 HOH A 190 590 340 HOH HOH . G 7 HOH A 191 591 464 HOH HOH . G 7 HOH A 192 592 409 HOH HOH . G 7 HOH A 193 593 398 HOH HOH . G 7 HOH A 194 594 477 HOH HOH . G 7 HOH A 195 595 472 HOH HOH . G 7 HOH A 196 596 372 HOH HOH . G 7 HOH A 197 597 334 HOH HOH . G 7 HOH A 198 598 434 HOH HOH . G 7 HOH A 199 599 474 HOH HOH . G 7 HOH A 200 600 475 HOH HOH . G 7 HOH A 201 601 469 HOH HOH . G 7 HOH A 202 602 458 HOH HOH . G 7 HOH A 203 603 314 HOH HOH . G 7 HOH A 204 604 395 HOH HOH . G 7 HOH A 205 605 326 HOH HOH . G 7 HOH A 206 606 390 HOH HOH . G 7 HOH A 207 607 416 HOH HOH . G 7 HOH A 208 608 479 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 1.489 -11.54 15.244 1 21.03 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 5 1.695 -11.011 16.615 1 18.53 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 5 2.341 -10.759 14.341 1 24.68 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 5 2.359 -11.375 13.056 1 19.81 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 5 3.813 -10.815 14.836 1 27.26 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 5 4.775 -10.405 13.828 1 31.73 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #