data_5THZ
#
_model_server_result.job_id            wVQfBYQODGmrKczW95t1Qw 
_model_server_result.datetime_utc      '2025-03-04 22:04:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5thz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5THZ 
#
_exptl.entry_id    5THZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.46 
_cell.angle_gamma         90 
_cell.entry_id            5THZ 
_cell.length_a            46.124 
_cell.length_b            129.131 
_cell.length_c            63.076 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5THZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 77 B GLN 53 1_555 A N MET 78 B MET 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MET 78 B MET 54 1_555 A N GLY 79 B GLY 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     5THZ 
_atom_sites.fract_transf_matrix[1][1]    0.021681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008521 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017035 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH B 1 501 501 SAH SAH . 
D 3 GOL B 1 502 1 GOL GOL . 
E 2 SAH A 1 501 501 SAH SAH . 
F 4 FLC A 1 502 1 FLC FLC . 
G 5 HOH B 1 601 49 HOH HOH . 
G 5 HOH B 2 602 41 HOH HOH . 
G 5 HOH B 3 603 15 HOH HOH . 
G 5 HOH B 4 604 16 HOH HOH . 
G 5 HOH B 5 605 110 HOH HOH . 
G 5 HOH B 6 606 23 HOH HOH . 
G 5 HOH B 7 607 57 HOH HOH . 
G 5 HOH B 8 608 130 HOH HOH . 
G 5 HOH B 9 609 60 HOH HOH . 
G 5 HOH B 10 610 50 HOH HOH . 
G 5 HOH B 11 611 3 HOH HOH . 
G 5 HOH B 12 612 63 HOH HOH . 
G 5 HOH B 13 613 8 HOH HOH . 
G 5 HOH B 14 614 92 HOH HOH . 
G 5 HOH B 15 615 45 HOH HOH . 
G 5 HOH B 16 616 66 HOH HOH . 
G 5 HOH B 17 617 36 HOH HOH . 
G 5 HOH B 18 618 58 HOH HOH . 
G 5 HOH B 19 619 27 HOH HOH . 
G 5 HOH B 20 620 108 HOH HOH . 
G 5 HOH B 21 621 137 HOH HOH . 
G 5 HOH B 22 622 83 HOH HOH . 
G 5 HOH B 23 623 65 HOH HOH . 
G 5 HOH B 24 624 2 HOH HOH . 
G 5 HOH B 25 625 18 HOH HOH . 
G 5 HOH B 26 626 10 HOH HOH . 
G 5 HOH B 27 627 17 HOH HOH . 
G 5 HOH B 28 628 62 HOH HOH . 
G 5 HOH B 29 629 106 HOH HOH . 
G 5 HOH B 30 630 59 HOH HOH . 
G 5 HOH B 31 631 70 HOH HOH . 
G 5 HOH B 32 632 191 HOH HOH . 
G 5 HOH B 33 633 126 HOH HOH . 
G 5 HOH B 34 634 21 HOH HOH . 
G 5 HOH B 35 635 13 HOH HOH . 
G 5 HOH B 36 636 12 HOH HOH . 
G 5 HOH B 37 637 25 HOH HOH . 
G 5 HOH B 38 638 192 HOH HOH . 
G 5 HOH B 39 639 128 HOH HOH . 
G 5 HOH B 40 640 105 HOH HOH . 
G 5 HOH B 41 641 43 HOH HOH . 
G 5 HOH B 42 642 46 HOH HOH . 
G 5 HOH B 43 643 122 HOH HOH . 
G 5 HOH B 44 644 29 HOH HOH . 
G 5 HOH B 45 645 104 HOH HOH . 
G 5 HOH B 46 646 89 HOH HOH . 
G 5 HOH B 47 647 38 HOH HOH . 
G 5 HOH B 48 648 14 HOH HOH . 
G 5 HOH B 49 649 187 HOH HOH . 
G 5 HOH B 50 650 171 HOH HOH . 
G 5 HOH B 51 651 33 HOH HOH . 
G 5 HOH B 52 652 56 HOH HOH . 
G 5 HOH B 53 653 72 HOH HOH . 
G 5 HOH B 54 654 152 HOH HOH . 
G 5 HOH B 55 655 91 HOH HOH . 
G 5 HOH B 56 656 97 HOH HOH . 
G 5 HOH B 57 657 30 HOH HOH . 
G 5 HOH B 58 658 113 HOH HOH . 
G 5 HOH B 59 659 188 HOH HOH . 
G 5 HOH B 60 660 79 HOH HOH . 
G 5 HOH B 61 661 142 HOH HOH . 
G 5 HOH B 62 662 26 HOH HOH . 
G 5 HOH B 63 663 116 HOH HOH . 
G 5 HOH B 64 664 204 HOH HOH . 
G 5 HOH B 65 665 134 HOH HOH . 
G 5 HOH B 66 666 146 HOH HOH . 
G 5 HOH B 67 667 120 HOH HOH . 
G 5 HOH B 68 668 157 HOH HOH . 
G 5 HOH B 69 669 156 HOH HOH . 
G 5 HOH B 70 670 114 HOH HOH . 
G 5 HOH B 71 671 166 HOH HOH . 
G 5 HOH B 72 672 109 HOH HOH . 
G 5 HOH B 73 673 96 HOH HOH . 
G 5 HOH B 74 674 123 HOH HOH . 
G 5 HOH B 75 675 40 HOH HOH . 
G 5 HOH B 76 676 167 HOH HOH . 
G 5 HOH B 77 677 121 HOH HOH . 
G 5 HOH B 78 678 75 HOH HOH . 
G 5 HOH B 79 679 162 HOH HOH . 
H 5 HOH A 1 601 165 HOH HOH . 
H 5 HOH A 2 602 20 HOH HOH . 
H 5 HOH A 3 603 159 HOH HOH . 
H 5 HOH A 4 604 174 HOH HOH . 
H 5 HOH A 5 605 53 HOH HOH . 
H 5 HOH A 6 606 69 HOH HOH . 
H 5 HOH A 7 607 98 HOH HOH . 
H 5 HOH A 8 608 64 HOH HOH . 
H 5 HOH A 9 609 85 HOH HOH . 
H 5 HOH A 10 610 55 HOH HOH . 
H 5 HOH A 11 611 11 HOH HOH . 
H 5 HOH A 12 612 124 HOH HOH . 
H 5 HOH A 13 613 93 HOH HOH . 
H 5 HOH A 14 614 143 HOH HOH . 
H 5 HOH A 15 615 140 HOH HOH . 
H 5 HOH A 16 616 139 HOH HOH . 
H 5 HOH A 17 617 80 HOH HOH . 
H 5 HOH A 18 618 175 HOH HOH . 
H 5 HOH A 19 619 76 HOH HOH . 
H 5 HOH A 20 620 6 HOH HOH . 
H 5 HOH A 21 621 31 HOH HOH . 
H 5 HOH A 22 622 78 HOH HOH . 
H 5 HOH A 23 623 88 HOH HOH . 
H 5 HOH A 24 624 39 HOH HOH . 
H 5 HOH A 25 625 138 HOH HOH . 
H 5 HOH A 26 626 87 HOH HOH . 
H 5 HOH A 27 627 71 HOH HOH . 
H 5 HOH A 28 628 52 HOH HOH . 
H 5 HOH A 29 629 37 HOH HOH . 
H 5 HOH A 30 630 9 HOH HOH . 
H 5 HOH A 31 631 158 HOH HOH . 
H 5 HOH A 32 632 48 HOH HOH . 
H 5 HOH A 33 633 180 HOH HOH . 
H 5 HOH A 34 634 1 HOH HOH . 
H 5 HOH A 35 635 186 HOH HOH . 
H 5 HOH A 36 636 22 HOH HOH . 
H 5 HOH A 37 637 19 HOH HOH . 
H 5 HOH A 38 638 194 HOH HOH . 
H 5 HOH A 39 639 77 HOH HOH . 
H 5 HOH A 40 640 84 HOH HOH . 
H 5 HOH A 41 641 112 HOH HOH . 
H 5 HOH A 42 642 133 HOH HOH . 
H 5 HOH A 43 643 5 HOH HOH . 
H 5 HOH A 44 644 74 HOH HOH . 
H 5 HOH A 45 645 54 HOH HOH . 
H 5 HOH A 46 646 7 HOH HOH . 
H 5 HOH A 47 647 100 HOH HOH . 
H 5 HOH A 48 648 99 HOH HOH . 
H 5 HOH A 49 649 4 HOH HOH . 
H 5 HOH A 50 650 182 HOH HOH . 
H 5 HOH A 51 651 150 HOH HOH . 
H 5 HOH A 52 652 44 HOH HOH . 
H 5 HOH A 53 653 28 HOH HOH . 
H 5 HOH A 54 654 170 HOH HOH . 
H 5 HOH A 55 655 172 HOH HOH . 
H 5 HOH A 56 656 141 HOH HOH . 
H 5 HOH A 57 657 103 HOH HOH . 
H 5 HOH A 58 658 67 HOH HOH . 
H 5 HOH A 59 659 214 HOH HOH . 
H 5 HOH A 60 660 32 HOH HOH . 
H 5 HOH A 61 661 145 HOH HOH . 
H 5 HOH A 62 662 24 HOH HOH . 
H 5 HOH A 63 663 136 HOH HOH . 
H 5 HOH A 64 664 68 HOH HOH . 
H 5 HOH A 65 665 47 HOH HOH . 
H 5 HOH A 66 666 129 HOH HOH . 
H 5 HOH A 67 667 42 HOH HOH . 
H 5 HOH A 68 668 168 HOH HOH . 
H 5 HOH A 69 669 119 HOH HOH . 
H 5 HOH A 70 670 144 HOH HOH . 
H 5 HOH A 71 671 111 HOH HOH . 
H 5 HOH A 72 672 61 HOH HOH . 
H 5 HOH A 73 673 102 HOH HOH . 
H 5 HOH A 74 674 195 HOH HOH . 
H 5 HOH A 75 675 51 HOH HOH . 
H 5 HOH A 76 676 148 HOH HOH . 
H 5 HOH A 77 677 155 HOH HOH . 
H 5 HOH A 78 678 86 HOH HOH . 
H 5 HOH A 79 679 154 HOH HOH . 
H 5 HOH A 80 680 94 HOH HOH . 
H 5 HOH A 81 681 90 HOH HOH . 
H 5 HOH A 82 682 160 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -10.352 7.897 -16.263 1 69.97 ? C1 GOL 502 B 1 
HETATM 2 O O1 GOL . . . D 3 -10.787 6.651 -16.771 1 71.38 ? O1 GOL 502 B 1 
HETATM 3 C C2 GOL . . . D 3 -9.43 8.618 -17.248 1 61.18 ? C2 GOL 502 B 1 
HETATM 4 O O2 GOL . . . D 3 -10.036 9.859 -17.534 1 53.84 ? O2 GOL 502 B 1 
HETATM 5 C C3 GOL . . . D 3 -8.033 8.808 -16.634 1 59.41 ? C3 GOL 502 B 1 
HETATM 6 O O3 GOL . . . D 3 -7.265 9.793 -17.305 1 54.45 ? O3 GOL 502 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#