data_5TI2 # _model_server_result.job_id 1CAfq-1HH5do6kTlU2OHwA _model_server_result.datetime_utc '2024-11-24 14:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ti2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5TI2 # _exptl.entry_id 5TI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TI2 _cell.length_a 37.15 _cell.length_b 43.91 _cell.length_c 78.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 123 n n C1 C2 EDO sing 124 n n C1 H11 EDO sing 125 n n C1 H12 EDO sing 126 n n O1 HO1 EDO sing 127 n n C2 O2 EDO sing 128 n n C2 H21 EDO sing 129 n n C2 H22 EDO sing 130 n n O2 HO2 EDO sing 131 n n # _atom_sites.entry_id 5TI2 _atom_sites.fract_transf_matrix[1][1] 0.026918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7CJ A 1 201 1 7CJ LIG . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 4 HOH A 1 301 107 HOH HOH . F 4 HOH A 2 302 51 HOH HOH . F 4 HOH A 3 303 69 HOH HOH . F 4 HOH A 4 304 85 HOH HOH . F 4 HOH A 5 305 41 HOH HOH . F 4 HOH A 6 306 100 HOH HOH . F 4 HOH A 7 307 8 HOH HOH . F 4 HOH A 8 308 116 HOH HOH . F 4 HOH A 9 309 59 HOH HOH . F 4 HOH A 10 310 30 HOH HOH . F 4 HOH A 11 311 2 HOH HOH . F 4 HOH A 12 312 47 HOH HOH . F 4 HOH A 13 313 42 HOH HOH . F 4 HOH A 14 314 78 HOH HOH . F 4 HOH A 15 315 75 HOH HOH . F 4 HOH A 16 316 17 HOH HOH . F 4 HOH A 17 317 58 HOH HOH . F 4 HOH A 18 318 56 HOH HOH . F 4 HOH A 19 319 61 HOH HOH . F 4 HOH A 20 320 74 HOH HOH . F 4 HOH A 21 321 98 HOH HOH . F 4 HOH A 22 322 40 HOH HOH . F 4 HOH A 23 323 20 HOH HOH . F 4 HOH A 24 324 65 HOH HOH . F 4 HOH A 25 325 124 HOH HOH . F 4 HOH A 26 326 29 HOH HOH . F 4 HOH A 27 327 38 HOH HOH . F 4 HOH A 28 328 104 HOH HOH . F 4 HOH A 29 329 76 HOH HOH . F 4 HOH A 30 330 45 HOH HOH . F 4 HOH A 31 331 137 HOH HOH . F 4 HOH A 32 332 52 HOH HOH . F 4 HOH A 33 333 31 HOH HOH . F 4 HOH A 34 334 88 HOH HOH . F 4 HOH A 35 335 12 HOH HOH . F 4 HOH A 36 336 16 HOH HOH . F 4 HOH A 37 337 22 HOH HOH . F 4 HOH A 38 338 36 HOH HOH . F 4 HOH A 39 339 73 HOH HOH . F 4 HOH A 40 340 49 HOH HOH . F 4 HOH A 41 341 53 HOH HOH . F 4 HOH A 42 342 4 HOH HOH . F 4 HOH A 43 343 10 HOH HOH . F 4 HOH A 44 344 57 HOH HOH . F 4 HOH A 45 345 9 HOH HOH . F 4 HOH A 46 346 25 HOH HOH . F 4 HOH A 47 347 68 HOH HOH . F 4 HOH A 48 348 77 HOH HOH . F 4 HOH A 49 349 111 HOH HOH . F 4 HOH A 50 350 3 HOH HOH . F 4 HOH A 51 351 7 HOH HOH . F 4 HOH A 52 352 106 HOH HOH . F 4 HOH A 53 353 119 HOH HOH . F 4 HOH A 54 354 62 HOH HOH . F 4 HOH A 55 355 5 HOH HOH . F 4 HOH A 56 356 126 HOH HOH . F 4 HOH A 57 357 32 HOH HOH . F 4 HOH A 58 358 105 HOH HOH . F 4 HOH A 59 359 70 HOH HOH . F 4 HOH A 60 360 108 HOH HOH . F 4 HOH A 61 361 19 HOH HOH . F 4 HOH A 62 362 43 HOH HOH . F 4 HOH A 63 363 24 HOH HOH . F 4 HOH A 64 364 60 HOH HOH . F 4 HOH A 65 365 18 HOH HOH . F 4 HOH A 66 366 89 HOH HOH . F 4 HOH A 67 367 133 HOH HOH . F 4 HOH A 68 368 46 HOH HOH . F 4 HOH A 69 369 113 HOH HOH . F 4 HOH A 70 370 84 HOH HOH . F 4 HOH A 71 371 54 HOH HOH . F 4 HOH A 72 372 66 HOH HOH . F 4 HOH A 73 373 21 HOH HOH . F 4 HOH A 74 374 13 HOH HOH . F 4 HOH A 75 375 35 HOH HOH . F 4 HOH A 76 376 44 HOH HOH . F 4 HOH A 77 377 48 HOH HOH . F 4 HOH A 78 378 11 HOH HOH . F 4 HOH A 79 379 97 HOH HOH . F 4 HOH A 80 380 82 HOH HOH . F 4 HOH A 81 381 112 HOH HOH . F 4 HOH A 82 382 130 HOH HOH . F 4 HOH A 83 383 136 HOH HOH . F 4 HOH A 84 384 103 HOH HOH . F 4 HOH A 85 385 72 HOH HOH . F 4 HOH A 86 386 134 HOH HOH . F 4 HOH A 87 387 1 HOH HOH . F 4 HOH A 88 388 50 HOH HOH . F 4 HOH A 89 389 14 HOH HOH . F 4 HOH A 90 390 99 HOH HOH . F 4 HOH A 91 391 15 HOH HOH . F 4 HOH A 92 392 26 HOH HOH . F 4 HOH A 93 393 117 HOH HOH . F 4 HOH A 94 394 27 HOH HOH . F 4 HOH A 95 395 81 HOH HOH . F 4 HOH A 96 396 110 HOH HOH . F 4 HOH A 97 397 33 HOH HOH . F 4 HOH A 98 398 23 HOH HOH . F 4 HOH A 99 399 6 HOH HOH . F 4 HOH A 100 400 39 HOH HOH . F 4 HOH A 101 401 92 HOH HOH . F 4 HOH A 102 402 37 HOH HOH . F 4 HOH A 103 403 120 HOH HOH . F 4 HOH A 104 404 86 HOH HOH . F 4 HOH A 105 405 128 HOH HOH . F 4 HOH A 106 406 138 HOH HOH . F 4 HOH A 107 407 55 HOH HOH . F 4 HOH A 108 408 131 HOH HOH . F 4 HOH A 109 409 121 HOH HOH . F 4 HOH A 110 410 96 HOH HOH . F 4 HOH A 111 411 109 HOH HOH . F 4 HOH A 112 412 94 HOH HOH . F 4 HOH A 113 413 91 HOH HOH . F 4 HOH A 114 414 115 HOH HOH . F 4 HOH A 115 415 125 HOH HOH . F 4 HOH A 116 416 34 HOH HOH . F 4 HOH A 117 417 71 HOH HOH . F 4 HOH A 118 418 135 HOH HOH . F 4 HOH A 119 419 129 HOH HOH . F 4 HOH A 120 420 114 HOH HOH . F 4 HOH A 121 421 101 HOH HOH . F 4 HOH A 122 422 28 HOH HOH . F 4 HOH A 123 423 64 HOH HOH . F 4 HOH A 124 424 87 HOH HOH . F 4 HOH A 125 425 90 HOH HOH . F 4 HOH A 126 426 67 HOH HOH . F 4 HOH A 127 427 95 HOH HOH . F 4 HOH A 128 428 123 HOH HOH . F 4 HOH A 129 429 132 HOH HOH . F 4 HOH A 130 430 63 HOH HOH . F 4 HOH A 131 431 127 HOH HOH . F 4 HOH A 132 432 79 HOH HOH . F 4 HOH A 133 433 83 HOH HOH . F 4 HOH A 134 434 80 HOH HOH . F 4 HOH A 135 435 118 HOH HOH . F 4 HOH A 136 436 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 42.928 17.974 0.806 1 33.86 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 3 41.608 17.501 0.52 1 35.81 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 3 42.889 19.434 1.249 1 32.17 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 3 42.224 19.559 2.516 1 31.37 ? O2 EDO 204 A 1 HETATM 5 H H11 EDO . . . E 3 43.371 17.365 1.597 1 40.63 ? H11 EDO 204 A 1 HETATM 6 H H12 EDO . . . E 3 43.552 17.878 -0.084 1 40.63 ? H12 EDO 204 A 1 HETATM 7 H HO1 EDO . . . E 3 41.651 16.575 0.241 1 42.97 ? HO1 EDO 204 A 1 HETATM 8 H H21 EDO . . . E 3 42.362 20.029 0.499 1 38.6 ? H21 EDO 204 A 1 HETATM 9 H H22 EDO . . . E 3 43.907 19.819 1.33 1 38.6 ? H22 EDO 204 A 1 HETATM 10 H HO2 EDO . . . E 3 42.208 20.489 2.781 1 37.64 ? HO2 EDO 204 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #