data_5TIM # _model_server_result.job_id hx8AA7--73_YOTnvqbbtew _model_server_result.datetime_utc '2024-11-24 15:12:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":257}' # _entry.id 5TIM # _exptl.entry_id 5TIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TIM _cell.length_a 113.14 _cell.length_b 97.69 _cell.length_c 46.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 5TIM _atom_sites.fract_transf_matrix[1][1] 0.008839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 256 256 SO4 SO4 . D 3 DTT A 1 257 257 DTT DTT . E 2 SO4 B 1 255 255 SO4 SO4 . F 4 HOH A 1 562 562 HOH HOH . F 4 HOH A 2 564 564 HOH HOH . F 4 HOH A 3 567 567 HOH HOH . F 4 HOH A 4 571 571 HOH HOH . F 4 HOH A 5 572 572 HOH HOH . F 4 HOH A 6 575 575 HOH HOH . F 4 HOH A 7 576 576 HOH HOH . F 4 HOH A 8 578 578 HOH HOH . F 4 HOH A 9 579 579 HOH HOH . F 4 HOH A 10 581 581 HOH HOH . F 4 HOH A 11 583 583 HOH HOH . F 4 HOH A 12 585 585 HOH HOH . F 4 HOH A 13 592 592 HOH HOH . F 4 HOH A 14 594 594 HOH HOH . F 4 HOH A 15 595 595 HOH HOH . F 4 HOH A 16 599 599 HOH HOH . F 4 HOH A 17 600 600 HOH HOH . F 4 HOH A 18 601 601 HOH HOH . F 4 HOH A 19 602 602 HOH HOH . F 4 HOH A 20 603 603 HOH HOH . F 4 HOH A 21 605 605 HOH HOH . F 4 HOH A 22 606 606 HOH HOH . F 4 HOH A 23 607 607 HOH HOH . F 4 HOH A 24 608 608 HOH HOH . F 4 HOH A 25 610 610 HOH HOH . F 4 HOH A 26 611 611 HOH HOH . F 4 HOH A 27 614 614 HOH HOH . F 4 HOH A 28 616 616 HOH HOH . F 4 HOH A 29 618 618 HOH HOH . F 4 HOH A 30 619 619 HOH HOH . F 4 HOH A 31 620 620 HOH HOH . F 4 HOH A 32 621 621 HOH HOH . F 4 HOH A 33 623 623 HOH HOH . F 4 HOH A 34 624 624 HOH HOH . F 4 HOH A 35 627 627 HOH HOH . F 4 HOH A 36 630 630 HOH HOH . F 4 HOH A 37 631 631 HOH HOH . F 4 HOH A 38 633 633 HOH HOH . F 4 HOH A 39 634 634 HOH HOH . F 4 HOH A 40 638 638 HOH HOH . F 4 HOH A 41 639 639 HOH HOH . F 4 HOH A 42 640 640 HOH HOH . F 4 HOH A 43 642 642 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . F 4 HOH A 49 649 649 HOH HOH . F 4 HOH A 50 652 652 HOH HOH . F 4 HOH A 51 653 653 HOH HOH . F 4 HOH A 52 654 654 HOH HOH . F 4 HOH A 53 655 655 HOH HOH . F 4 HOH A 54 657 657 HOH HOH . F 4 HOH A 55 675 675 HOH HOH . F 4 HOH A 56 677 677 HOH HOH . F 4 HOH A 57 683 683 HOH HOH . F 4 HOH A 58 684 684 HOH HOH . F 4 HOH A 59 686 686 HOH HOH . F 4 HOH A 60 687 687 HOH HOH . F 4 HOH A 61 692 692 HOH HOH . F 4 HOH A 62 696 696 HOH HOH . F 4 HOH A 63 700 700 HOH HOH . F 4 HOH A 64 711 711 HOH HOH . F 4 HOH A 65 712 712 HOH HOH . F 4 HOH A 66 716 716 HOH HOH . F 4 HOH A 67 719 719 HOH HOH . F 4 HOH A 68 722 722 HOH HOH . F 4 HOH A 69 724 724 HOH HOH . F 4 HOH A 70 728 728 HOH HOH . F 4 HOH A 71 732 732 HOH HOH . F 4 HOH A 72 734 734 HOH HOH . F 4 HOH A 73 739 739 HOH HOH . F 4 HOH A 74 741 741 HOH HOH . F 4 HOH A 75 744 744 HOH HOH . F 4 HOH A 76 745 745 HOH HOH . F 4 HOH A 77 747 747 HOH HOH . F 4 HOH A 78 750 750 HOH HOH . F 4 HOH A 79 757 757 HOH HOH . F 4 HOH A 80 760 760 HOH HOH . F 4 HOH A 81 763 763 HOH HOH . F 4 HOH A 82 766 766 HOH HOH . F 4 HOH A 83 767 767 HOH HOH . F 4 HOH A 84 769 769 HOH HOH . F 4 HOH A 85 771 771 HOH HOH . F 4 HOH A 86 773 773 HOH HOH . F 4 HOH A 87 775 775 HOH HOH . F 4 HOH A 88 776 776 HOH HOH . F 4 HOH A 89 778 778 HOH HOH . F 4 HOH A 90 784 784 HOH HOH . F 4 HOH A 91 788 788 HOH HOH . F 4 HOH A 92 789 789 HOH HOH . F 4 HOH A 93 794 794 HOH HOH . F 4 HOH A 94 801 801 HOH HOH . F 4 HOH A 95 803 803 HOH HOH . F 4 HOH A 96 804 804 HOH HOH . F 4 HOH A 97 805 805 HOH HOH . F 4 HOH A 98 808 808 HOH HOH . F 4 HOH A 99 809 809 HOH HOH . F 4 HOH A 100 810 810 HOH HOH . F 4 HOH A 101 811 811 HOH HOH . F 4 HOH A 102 813 813 HOH HOH . F 4 HOH A 103 819 819 HOH HOH . F 4 HOH A 104 820 820 HOH HOH . F 4 HOH A 105 821 821 HOH HOH . F 4 HOH A 106 822 822 HOH HOH . F 4 HOH A 107 823 823 HOH HOH . F 4 HOH A 108 825 825 HOH HOH . F 4 HOH A 109 826 826 HOH HOH . F 4 HOH A 110 829 829 HOH HOH . F 4 HOH A 111 832 832 HOH HOH . F 4 HOH A 112 841 841 HOH HOH . F 4 HOH A 113 847 847 HOH HOH . F 4 HOH A 114 851 851 HOH HOH . F 4 HOH A 115 864 864 HOH HOH . F 4 HOH A 116 867 867 HOH HOH . F 4 HOH A 117 871 871 HOH HOH . F 4 HOH A 118 875 875 HOH HOH . F 4 HOH A 119 877 877 HOH HOH . F 4 HOH A 120 880 880 HOH HOH . F 4 HOH A 121 884 884 HOH HOH . F 4 HOH A 122 888 888 HOH HOH . F 4 HOH A 123 892 892 HOH HOH . F 4 HOH A 124 895 895 HOH HOH . F 4 HOH A 125 902 902 HOH HOH . F 4 HOH A 126 903 903 HOH HOH . F 4 HOH A 127 904 904 HOH HOH . F 4 HOH A 128 905 905 HOH HOH . F 4 HOH A 129 908 908 HOH HOH . F 4 HOH A 130 914 914 HOH HOH . F 4 HOH A 131 920 920 HOH HOH . F 4 HOH A 132 921 921 HOH HOH . F 4 HOH A 133 926 926 HOH HOH . F 4 HOH A 134 931 931 HOH HOH . F 4 HOH A 135 935 935 HOH HOH . F 4 HOH A 136 941 941 HOH HOH . F 4 HOH A 137 942 942 HOH HOH . F 4 HOH A 138 947 947 HOH HOH . F 4 HOH A 139 953 953 HOH HOH . F 4 HOH A 140 955 955 HOH HOH . F 4 HOH A 141 957 957 HOH HOH . F 4 HOH A 142 958 958 HOH HOH . F 4 HOH A 143 959 959 HOH HOH . F 4 HOH A 144 960 960 HOH HOH . F 4 HOH A 145 961 961 HOH HOH . F 4 HOH A 146 962 962 HOH HOH . F 4 HOH A 147 965 965 HOH HOH . F 4 HOH A 148 967 967 HOH HOH . F 4 HOH A 149 970 970 HOH HOH . F 4 HOH A 150 976 976 HOH HOH . F 4 HOH A 151 977 977 HOH HOH . F 4 HOH A 152 978 978 HOH HOH . F 4 HOH A 153 984 984 HOH HOH . F 4 HOH A 154 985 985 HOH HOH . F 4 HOH A 155 993 993 HOH HOH . F 4 HOH A 156 997 997 HOH HOH . F 4 HOH A 157 998 998 HOH HOH . G 4 HOH B 1 561 561 HOH HOH . G 4 HOH B 2 563 563 HOH HOH . G 4 HOH B 3 565 565 HOH HOH . G 4 HOH B 4 568 568 HOH HOH . G 4 HOH B 5 569 569 HOH HOH . G 4 HOH B 6 570 570 HOH HOH . G 4 HOH B 7 573 573 HOH HOH . G 4 HOH B 8 574 574 HOH HOH . G 4 HOH B 9 577 577 HOH HOH . G 4 HOH B 10 580 580 HOH HOH . G 4 HOH B 11 582 582 HOH HOH . G 4 HOH B 12 586 586 HOH HOH . G 4 HOH B 13 587 587 HOH HOH . G 4 HOH B 14 588 588 HOH HOH . G 4 HOH B 15 589 589 HOH HOH . G 4 HOH B 16 590 590 HOH HOH . G 4 HOH B 17 593 593 HOH HOH . G 4 HOH B 18 597 597 HOH HOH . G 4 HOH B 19 598 598 HOH HOH . G 4 HOH B 20 604 604 HOH HOH . G 4 HOH B 21 609 609 HOH HOH . G 4 HOH B 22 612 612 HOH HOH . G 4 HOH B 23 613 613 HOH HOH . G 4 HOH B 24 615 615 HOH HOH . G 4 HOH B 25 617 617 HOH HOH . G 4 HOH B 26 622 622 HOH HOH . G 4 HOH B 27 625 625 HOH HOH . G 4 HOH B 28 626 626 HOH HOH . G 4 HOH B 29 632 632 HOH HOH . G 4 HOH B 30 635 635 HOH HOH . G 4 HOH B 31 636 636 HOH HOH . G 4 HOH B 32 641 641 HOH HOH . G 4 HOH B 33 643 643 HOH HOH . G 4 HOH B 34 650 650 HOH HOH . G 4 HOH B 35 651 651 HOH HOH . G 4 HOH B 36 658 658 HOH HOH . G 4 HOH B 37 662 662 HOH HOH . G 4 HOH B 38 663 663 HOH HOH . G 4 HOH B 39 664 664 HOH HOH . G 4 HOH B 40 667 667 HOH HOH . G 4 HOH B 41 672 672 HOH HOH . G 4 HOH B 42 674 674 HOH HOH . G 4 HOH B 43 680 680 HOH HOH . G 4 HOH B 44 682 682 HOH HOH . G 4 HOH B 45 688 688 HOH HOH . G 4 HOH B 46 694 694 HOH HOH . G 4 HOH B 47 699 699 HOH HOH . G 4 HOH B 48 703 703 HOH HOH . G 4 HOH B 49 717 717 HOH HOH . G 4 HOH B 50 720 720 HOH HOH . G 4 HOH B 51 748 748 HOH HOH . G 4 HOH B 52 759 759 HOH HOH . G 4 HOH B 53 762 762 HOH HOH . G 4 HOH B 54 770 770 HOH HOH . G 4 HOH B 55 779 779 HOH HOH . G 4 HOH B 56 780 780 HOH HOH . G 4 HOH B 57 781 781 HOH HOH . G 4 HOH B 58 782 782 HOH HOH . G 4 HOH B 59 783 783 HOH HOH . G 4 HOH B 60 785 785 HOH HOH . G 4 HOH B 61 796 796 HOH HOH . G 4 HOH B 62 797 797 HOH HOH . G 4 HOH B 63 800 800 HOH HOH . G 4 HOH B 64 802 802 HOH HOH . G 4 HOH B 65 806 806 HOH HOH . G 4 HOH B 66 812 812 HOH HOH . G 4 HOH B 67 815 815 HOH HOH . G 4 HOH B 68 824 824 HOH HOH . G 4 HOH B 69 828 828 HOH HOH . G 4 HOH B 70 830 830 HOH HOH . G 4 HOH B 71 835 835 HOH HOH . G 4 HOH B 72 836 836 HOH HOH . G 4 HOH B 73 837 837 HOH HOH . G 4 HOH B 74 848 848 HOH HOH . G 4 HOH B 75 852 852 HOH HOH . G 4 HOH B 76 862 862 HOH HOH . G 4 HOH B 77 865 865 HOH HOH . G 4 HOH B 78 866 866 HOH HOH . G 4 HOH B 79 868 868 HOH HOH . G 4 HOH B 80 872 872 HOH HOH . G 4 HOH B 81 878 878 HOH HOH . G 4 HOH B 82 881 881 HOH HOH . G 4 HOH B 83 882 882 HOH HOH . G 4 HOH B 84 887 887 HOH HOH . G 4 HOH B 85 896 896 HOH HOH . G 4 HOH B 86 899 899 HOH HOH . G 4 HOH B 87 909 909 HOH HOH . G 4 HOH B 88 910 910 HOH HOH . G 4 HOH B 89 911 911 HOH HOH . G 4 HOH B 90 912 912 HOH HOH . G 4 HOH B 91 913 913 HOH HOH . G 4 HOH B 92 919 919 HOH HOH . G 4 HOH B 93 923 923 HOH HOH . G 4 HOH B 94 928 928 HOH HOH . G 4 HOH B 95 929 929 HOH HOH . G 4 HOH B 96 934 934 HOH HOH . G 4 HOH B 97 936 936 HOH HOH . G 4 HOH B 98 940 940 HOH HOH . G 4 HOH B 99 943 943 HOH HOH . G 4 HOH B 100 945 945 HOH HOH . G 4 HOH B 101 951 951 HOH HOH . G 4 HOH B 102 952 952 HOH HOH . G 4 HOH B 103 954 954 HOH HOH . G 4 HOH B 104 956 956 HOH HOH . G 4 HOH B 105 964 964 HOH HOH . G 4 HOH B 106 966 966 HOH HOH . G 4 HOH B 107 968 968 HOH HOH . G 4 HOH B 108 969 969 HOH HOH . G 4 HOH B 109 971 971 HOH HOH . G 4 HOH B 110 973 973 HOH HOH . G 4 HOH B 111 974 974 HOH HOH . G 4 HOH B 112 975 975 HOH HOH . G 4 HOH B 113 979 979 HOH HOH . G 4 HOH B 114 980 980 HOH HOH . G 4 HOH B 115 981 981 HOH HOH . G 4 HOH B 116 982 982 HOH HOH . G 4 HOH B 117 986 986 HOH HOH . G 4 HOH B 118 989 989 HOH HOH . G 4 HOH B 119 990 990 HOH HOH . G 4 HOH B 120 991 991 HOH HOH . G 4 HOH B 121 992 992 HOH HOH . G 4 HOH B 122 996 996 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 3 54.473 45.813 19.261 1 37.37 ? S1 DTT 257 A 1 HETATM 2 C C1 DTT . . . D 3 54.423 45.607 17.46 1 35.25 ? C1 DTT 257 A 1 HETATM 3 C C2 DTT . . . D 3 55.512 46.46 16.712 1 36.02 ? C2 DTT 257 A 1 HETATM 4 O O2 DTT . . . D 3 56.784 45.986 17.23 1 34.17 ? O2 DTT 257 A 1 HETATM 5 C C3 DTT . . . D 3 55.408 48.053 16.758 1 34.27 ? C3 DTT 257 A 1 HETATM 6 O O3 DTT . . . D 3 54.254 48.599 16.104 1 30.62 ? O3 DTT 257 A 1 HETATM 7 C C4 DTT . . . D 3 55.439 48.651 18.152 1 38.88 ? C4 DTT 257 A 1 HETATM 8 S S4 DTT . . . D 3 54.104 47.88 19.217 1 44.88 ? S4 DTT 257 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #