data_5TIO # _model_server_result.job_id kvR9tOoW6GpxJRLeOWro1Q _model_server_result.datetime_utc '2024-11-25 07:58:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 5TIO # _exptl.entry_id 5TIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,3aS,9bS)-2-[(2H-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4H-pyrrolo[3,4-c][1,6]naphthyridin-4-one _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TIO _cell.length_a 119.12 _cell.length_b 119.12 _cell.length_c 429.968 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 J N N ? 2 M N N ? 2 P N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 C CYS 138 1_555 A SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 198 C CYS 198 1_555 A SG CYS 209 C CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 138 A CYS 138 1_555 B SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 198 A CYS 198 1_555 B SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 C SG CYS 138 B CYS 138 1_555 C SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 C SG CYS 198 B CYS 198 1_555 C SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 D SG CYS 138 D CYS 138 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 D SG CYS 198 D CYS 198 1_555 D SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 E SG CYS 138 E CYS 138 1_555 E SG CYS 152 E CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 E SG CYS 198 E CYS 198 1_555 E SG CYS 209 E CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A ND2 ASN 38 C ASN 38 1_555 I C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OE2 GLU 192 C GLU 192 1_555 H ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A NE2 HIS 215 C HIS 215 1_555 H ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 B OD1 ASP 194 A ASP 194 1_555 L ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 B NE2 HIS 215 A HIS 215 1_555 L ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc5 C OE2 GLU 192 B GLU 192 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc6 C OD1 ASP 194 B ASP 194 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc7 D OE2 GLU 192 D GLU 192 1_555 Q ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc8 D NE2 HIS 215 D HIS 215 1_555 Q ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc9 E OE2 GLU 192 E GLU 192 1_555 U ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc10 E OD1 ASP 194 E ASP 194 1_555 U ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C19 H19 N3 O5 S' _chem_comp.formula_weight 401.436 _chem_comp.id 7C6 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,3aS,9bS)-2-[(2H-1,3-benzodioxol-5-yl)sulfonyl]-3,5-dimethyl-1,2,3,3a,5,9b-hexahydro-4H-pyrrolo[3,4-c][1,6]naphthyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 S1 7C6 doub 1 n n O2 S1 7C6 doub 2 n n S1 C13 7C6 sing 3 n n S1 N1 7C6 sing 4 n n C14 C13 7C6 doub 5 n y C14 C15 7C6 sing 6 n y C13 C18 7C6 sing 7 n y C15 O4 7C6 sing 8 n n C15 C16 7C6 doub 9 n y C18 C17 7C6 doub 10 n y C19 O4 7C6 sing 11 n n C19 O5 7C6 sing 12 n n N1 C10 7C6 sing 13 n n N1 C1 7C6 sing 14 n n C16 C17 7C6 sing 15 n y C16 O5 7C6 sing 16 n n C10 C9 7C6 sing 17 n n C1 C11 7C6 sing 18 n n C1 C2 7C6 sing 19 n n C7 N3 7C6 doub 20 n y C7 C8 7C6 sing 21 n y C9 C2 7C6 sing 22 n n C9 C8 7C6 sing 23 n n N3 C6 7C6 sing 24 n y C2 C3 7C6 sing 25 n n C8 C4 7C6 doub 26 n y C6 C5 7C6 doub 27 n y C4 C5 7C6 sing 28 n y C4 N2 7C6 sing 29 n n C3 N2 7C6 sing 30 n n C3 O1 7C6 doub 31 n n N2 C12 7C6 sing 32 n n C11 H1 7C6 sing 33 n n C11 H2 7C6 sing 34 n n C11 H3 7C6 sing 35 n n C1 H4 7C6 sing 36 n n C2 H5 7C6 sing 37 n n C12 H6 7C6 sing 38 n n C12 H7 7C6 sing 39 n n C12 H8 7C6 sing 40 n n C5 H9 7C6 sing 41 n n C6 H10 7C6 sing 42 n n C7 H11 7C6 sing 43 n n C9 H12 7C6 sing 44 n n C10 H13 7C6 sing 45 n n C10 H14 7C6 sing 46 n n C14 H15 7C6 sing 47 n n C19 H16 7C6 sing 48 n n C19 H17 7C6 sing 49 n n C17 H18 7C6 sing 50 n n C18 H19 7C6 sing 51 n n # _atom_sites.entry_id 5TIO _atom_sites.fract_transf_matrix[1][1] 0.008395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 7C6 C 1 401 401 7C6 7C6 . G 3 GLY C 1 402 402 GLY GLY . H 4 ZN C 1 403 403 ZN ZN . I 5 NAG C 1 404 404 NAG NAG . J 2 7C6 A 1 401 401 7C6 7C6 . K 3 GLY A 1 402 402 GLY GLY . L 4 ZN A 1 403 403 ZN ZN . M 2 7C6 B 1 401 401 7C6 7C6 . N 3 GLY B 1 402 402 GLY GLY . O 4 ZN B 1 403 403 ZN ZN . P 2 7C6 D 1 401 401 7C6 7C6 . Q 4 ZN D 1 403 403 ZN ZN . R 3 GLY D 1 402 402 GLY GLY . S 2 7C6 E 1 401 401 7C6 7C6 . T 3 GLY E 1 402 402 GLY GLY . U 4 ZN E 1 403 403 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 7C6 . . . S 2 506.529 153.271 446.1 1 94.59 ? C11 7C6 401 E 1 HETATM 2 C C1 7C6 . . . S 2 506.286 151.815 445.666 1 94.92 ? C1 7C6 401 E 1 HETATM 3 C C2 7C6 . . . S 2 504.791 151.456 445.582 1 95.24 ? C2 7C6 401 E 1 HETATM 4 C C3 7C6 . . . S 2 503.91 152.228 446.587 1 96.42 ? C3 7C6 401 E 1 HETATM 5 O O1 7C6 . . . S 2 503.673 151.684 447.68 1 100.07 ? O1 7C6 401 E 1 HETATM 6 N N2 7C6 . . . S 2 503.352 153.486 446.224 1 93.7 ? N2 7C6 401 E 1 HETATM 7 C C12 7C6 . . . S 2 502.494 154.217 447.173 1 92.27 ? C12 7C6 401 E 1 HETATM 8 C C4 7C6 . . . S 2 503.63 154.06 444.973 1 96.85 ? C4 7C6 401 E 1 HETATM 9 C C5 7C6 . . . S 2 503.396 155.413 444.738 1 99.3 ? C5 7C6 401 E 1 HETATM 10 C C6 7C6 . . . S 2 503.691 155.96 443.484 1 100.96 ? C6 7C6 401 E 1 HETATM 11 N N3 7C6 . . . S 2 504.192 155.215 442.51 1 99.66 ? N3 7C6 401 E 1 HETATM 12 C C7 7C6 . . . S 2 504.424 153.921 442.702 1 100.02 ? C7 7C6 401 E 1 HETATM 13 C C8 7C6 . . . S 2 504.161 153.295 443.932 1 98.43 ? C8 7C6 401 E 1 HETATM 14 C C9 7C6 . . . S 2 504.421 151.784 444.133 1 96.22 ? C9 7C6 401 E 1 HETATM 15 C C10 7C6 . . . S 2 505.661 151.292 443.381 1 97.4 ? C10 7C6 401 E 1 HETATM 16 N N1 7C6 . . . S 2 506.801 151.564 444.291 1 97.1 ? N1 7C6 401 E 1 HETATM 17 S S1 7C6 . . . S 2 507.892 150.333 444.251 1 92.99 ? S1 7C6 401 E 1 HETATM 18 O O2 7C6 . . . S 2 508.999 150.68 445.204 1 90.39 ? O2 7C6 401 E 1 HETATM 19 O O3 7C6 . . . S 2 508.415 150.172 442.847 1 91.47 ? O3 7C6 401 E 1 HETATM 20 C C13 7C6 . . . S 2 507.2 148.835 444.804 1 88.17 ? C13 7C6 401 E 1 HETATM 21 C C14 7C6 . . . S 2 506.817 147.854 443.896 1 88.06 ? C14 7C6 401 E 1 HETATM 22 C C15 7C6 . . . S 2 506.276 146.649 444.354 1 83.5 ? C15 7C6 401 E 1 HETATM 23 O O4 7C6 . . . S 2 505.837 145.55 443.681 1 81.11 ? O4 7C6 401 E 1 HETATM 24 C C19 7C6 . . . S 2 505.027 144.879 444.632 1 79.66 ? C19 7C6 401 E 1 HETATM 25 O O5 7C6 . . . S 2 505.596 145.22 445.903 1 78.46 ? O5 7C6 401 E 1 HETATM 26 C C16 7C6 . . . S 2 506.128 146.435 445.722 1 79.86 ? C16 7C6 401 E 1 HETATM 27 C C17 7C6 . . . S 2 506.517 147.399 446.634 1 81.59 ? C17 7C6 401 E 1 HETATM 28 C C18 7C6 . . . S 2 507.055 148.6 446.171 1 86.71 ? C18 7C6 401 E 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #