data_5TIO # _model_server_result.job_id IAbjPwFj_mBAfp6b721ZIw _model_server_result.datetime_utc '2024-11-25 07:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":402}' # _entry.id 5TIO # _exptl.entry_id 5TIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TIO _cell.length_a 119.12 _cell.length_b 119.12 _cell.length_c 429.968 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 N N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 C CYS 138 1_555 A SG CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 198 C CYS 198 1_555 A SG CYS 209 C CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 138 A CYS 138 1_555 B SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 B SG CYS 198 A CYS 198 1_555 B SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 C SG CYS 138 B CYS 138 1_555 C SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf6 C SG CYS 198 B CYS 198 1_555 C SG CYS 209 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf7 D SG CYS 138 D CYS 138 1_555 D SG CYS 152 D CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 D SG CYS 198 D CYS 198 1_555 D SG CYS 209 D CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf9 E SG CYS 138 E CYS 138 1_555 E SG CYS 152 E CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 E SG CYS 198 E CYS 198 1_555 E SG CYS 209 E CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A ND2 ASN 38 C ASN 38 1_555 I C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OE2 GLU 192 C GLU 192 1_555 H ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A NE2 HIS 215 C HIS 215 1_555 H ZN ZN . C ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 B OD1 ASP 194 A ASP 194 1_555 L ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 B NE2 HIS 215 A HIS 215 1_555 L ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc5 C OE2 GLU 192 B GLU 192 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc6 C OD1 ASP 194 B ASP 194 1_555 O ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc7 D OE2 GLU 192 D GLU 192 1_555 Q ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc8 D NE2 HIS 215 D HIS 215 1_555 Q ZN ZN . D ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc9 E OE2 GLU 192 E GLU 192 1_555 U ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc10 E OD1 ASP 194 E ASP 194 1_555 U ZN ZN . E ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 171 n n N H GLY sing 172 n n N H2 GLY sing 173 n n CA C GLY sing 174 n n CA HA2 GLY sing 175 n n CA HA3 GLY sing 176 n n C O GLY doub 177 n n C OXT GLY sing 178 n n OXT HXT GLY sing 179 n n # _atom_sites.entry_id 5TIO _atom_sites.fract_transf_matrix[1][1] 0.008395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 7C6 C 1 401 401 7C6 7C6 . G 3 GLY C 1 402 402 GLY GLY . H 4 ZN C 1 403 403 ZN ZN . I 5 NAG C 1 404 404 NAG NAG . J 2 7C6 A 1 401 401 7C6 7C6 . K 3 GLY A 1 402 402 GLY GLY . L 4 ZN A 1 403 403 ZN ZN . M 2 7C6 B 1 401 401 7C6 7C6 . N 3 GLY B 1 402 402 GLY GLY . O 4 ZN B 1 403 403 ZN ZN . P 2 7C6 D 1 401 401 7C6 7C6 . Q 4 ZN D 1 403 403 ZN ZN . R 3 GLY D 1 402 402 GLY GLY . S 2 7C6 E 1 401 401 7C6 7C6 . T 3 GLY E 1 402 402 GLY GLY . U 4 ZN E 1 403 403 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . T 3 502.45 136.163 440.95 1 80.02 ? N GLY 402 E 1 HETATM 2 C CA GLY . . . T 3 501.258 135.807 441.784 1 77.79 ? CA GLY 402 E 1 HETATM 3 C C GLY . . . T 3 499.949 136.022 441.053 1 77.3 ? C GLY 402 E 1 HETATM 4 O O GLY . . . T 3 499.916 136.378 439.883 1 77.4 ? O GLY 402 E 1 HETATM 5 O OXT GLY . . . T 3 498.876 135.844 441.606 1 74.94 ? OXT GLY 402 E 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #