data_5TJ6 # _model_server_result.job_id 0RBY0oIxFpWvRsKHFtSIpg _model_server_result.datetime_utc '2024-10-28 02:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1108}' # _entry.id 5TJ6 # _exptl.entry_id 5TJ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 332.8 332.8 0 3 'point symmetry operation' ? ? 0 -1 0 1 0 0 0 0 1 332.8 0 0 4 'point symmetry operation' ? ? 0 1 0 -1 0 0 0 0 1 0 332.8 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 276 A THR 276 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A O THR 276 A THR 276 1_555 F K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc3 A OG1 THR 276 A THR 276 1_555 F K K . A K 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc4 A O VAL 277 A VAL 277 1_555 D K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 A O VAL 277 A VAL 277 1_555 E K K . A K 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? metalc ? metalc6 A O GLY 278 A GLY 278 1_555 C K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc7 A O GLY 278 A GLY 278 1_555 D K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc8 A O PHE 279 A PHE 279 1_555 C K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc9 A OD2 ASP 356 A ASP 356 1_555 H CA CA . A CA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc10 A O ARG 503 A ARG 503 1_555 H CA CA . A CA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc11 A O GLY 523 A GLY 523 1_555 H CA CA . A CA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc12 A OE1 GLU 525 A GLU 525 1_555 H CA CA . A CA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc13 A O GLU 591 A GLU 591 1_555 H CA CA . A CA 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc14 A O GLN 899 A GLN 899 1_555 I CA CA . A CA 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 A O ASP 902 A ASP 902 1_555 I CA CA . A CA 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc16 A OD1 ASP 905 A ASP 905 1_555 I CA CA . A CA 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc17 A OD2 ASP 907 A ASP 907 1_555 I CA CA . A CA 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TJ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 1101 1995 K K . C 2 K A 1 1102 1996 K K . D 2 K A 1 1103 1997 K K . E 2 K A 1 1104 1998 K K . F 2 K A 1 1105 1999 K K . G 3 MG A 1 1106 2000 MG MG . H 4 CA A 1 1107 2001 CA CA . I 4 CA A 1 1108 2002 CA CA . J 5 PGW A 1 1109 2011 PGW PGW . K 5 PGW A 1 1110 2012 PGW PGW . L 5 PGW A 1 1111 2013 PGW PGW . M 5 PGW A 1 1112 2014 PGW PGW . N 5 PGW A 1 1113 2015 PGW PGW . O 5 PGW A 1 1114 2016 PGW PGW . P 5 PGW A 1 1115 2017 PGW PGW . Q 5 PGW A 1 1116 2018 PGW PGW . R 5 PGW A 1 1117 2019 PGW PGW . S 5 PGW A 1 1118 2020 PGW PGW . T 5 PGW A 1 1119 2021 PGW PGW . U 5 PGW A 1 1120 2022 PGW PGW . V 5 PGW A 1 1121 2023 PGW PGW . W 5 PGW A 1 1122 2024 PGW PGW . X 5 PGW A 1 1123 2025 PGW PGW . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 204.941 _atom_site.Cartn_y 166.242 _atom_site.Cartn_z 184.923 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 257.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1108 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #