data_5TJ8 # _model_server_result.job_id 8qCccp5E8S-Csw6axj0VVw _model_server_result.datetime_utc '2024-11-05 04:01:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5TJ8 # _exptl.entry_id 5TJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJ8 _cell.length_a 44.229 _cell.length_b 89.269 _cell.length_c 111.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 169 A TYR 587 1_555 B NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc2 A O THR 381 A THR 799 1_555 B NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 A O THR 419 A THR 837 1_555 B NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc4 A OD1 ASN 422 A ASN 840 1_555 B NA NA . A NA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TJ8 _atom_sites.fract_transf_matrix[1][1] 0.02261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 901 902 NA NA . C 3 HOH A 1 1001 27 HOH HOH . C 3 HOH A 2 1002 29 HOH HOH . C 3 HOH A 3 1003 51 HOH HOH . C 3 HOH A 4 1004 20 HOH HOH . C 3 HOH A 5 1005 56 HOH HOH . C 3 HOH A 6 1006 7 HOH HOH . C 3 HOH A 7 1007 35 HOH HOH . C 3 HOH A 8 1008 46 HOH HOH . C 3 HOH A 9 1009 2 HOH HOH . C 3 HOH A 10 1010 47 HOH HOH . C 3 HOH A 11 1011 40 HOH HOH . C 3 HOH A 12 1012 10 HOH HOH . C 3 HOH A 13 1013 5 HOH HOH . C 3 HOH A 14 1014 41 HOH HOH . C 3 HOH A 15 1015 6 HOH HOH . C 3 HOH A 16 1016 4 HOH HOH . C 3 HOH A 17 1017 42 HOH HOH . C 3 HOH A 18 1018 19 HOH HOH . C 3 HOH A 19 1019 13 HOH HOH . C 3 HOH A 20 1020 36 HOH HOH . C 3 HOH A 21 1021 9 HOH HOH . C 3 HOH A 22 1022 18 HOH HOH . C 3 HOH A 23 1023 31 HOH HOH . C 3 HOH A 24 1024 30 HOH HOH . C 3 HOH A 25 1025 44 HOH HOH . C 3 HOH A 26 1026 34 HOH HOH . C 3 HOH A 27 1027 50 HOH HOH . C 3 HOH A 28 1028 23 HOH HOH . C 3 HOH A 29 1029 25 HOH HOH . C 3 HOH A 30 1030 53 HOH HOH . C 3 HOH A 31 1031 1 HOH HOH . C 3 HOH A 32 1032 17 HOH HOH . C 3 HOH A 33 1033 48 HOH HOH . C 3 HOH A 34 1034 54 HOH HOH . C 3 HOH A 35 1035 22 HOH HOH . C 3 HOH A 36 1036 24 HOH HOH . C 3 HOH A 37 1037 45 HOH HOH . C 3 HOH A 38 1038 37 HOH HOH . C 3 HOH A 39 1039 21 HOH HOH . C 3 HOH A 40 1040 32 HOH HOH . C 3 HOH A 41 1041 3 HOH HOH . C 3 HOH A 42 1042 16 HOH HOH . C 3 HOH A 43 1043 26 HOH HOH . C 3 HOH A 44 1044 14 HOH HOH . C 3 HOH A 45 1045 49 HOH HOH . C 3 HOH A 46 1046 38 HOH HOH . C 3 HOH A 47 1047 12 HOH HOH . C 3 HOH A 48 1048 11 HOH HOH . C 3 HOH A 49 1049 28 HOH HOH . C 3 HOH A 50 1050 39 HOH HOH . C 3 HOH A 51 1051 33 HOH HOH . C 3 HOH A 52 1052 43 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.124 _atom_site.Cartn_y -12.24 _atom_site.Cartn_z 75.216 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #