data_5TJJ # _model_server_result.job_id YTK5npw2uDU0NU4qsgFSRQ _model_server_result.datetime_utc '2024-11-05 00:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5TJJ # _exptl.entry_id 5TJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJJ _cell.length_a 98.38 _cell.length_b 98.38 _cell.length_c 119.485 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N ASP 5 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C GLY 102 A GLY 99 1_555 A N MSE 103 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C MSE 103 A MSE 100 1_555 A N THR 104 A THR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C THR 226 A THR 223 1_555 A N MSE 227 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C MSE 227 A MSE 224 1_555 A N THR 228 A THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B C GLY 102 B GLY 99 1_555 B N MSE 103 B MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C MSE 103 B MSE 100 1_555 B N THR 104 B THR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C THR 226 B THR 223 1_555 B N MSE 227 B MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 B C MSE 227 B MSE 224 1_555 B N THR 228 B THR 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5TJJ _atom_sites.fract_transf_matrix[1][1] 0.010165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 3 HOH A 1 401 25 HOH HOH . D 3 HOH A 2 402 14 HOH HOH . D 3 HOH A 3 403 5 HOH HOH . D 3 HOH A 4 404 45 HOH HOH . D 3 HOH A 5 405 1 HOH HOH . D 3 HOH A 6 406 18 HOH HOH . D 3 HOH A 7 407 41 HOH HOH . D 3 HOH A 8 408 39 HOH HOH . D 3 HOH A 9 409 40 HOH HOH . D 3 HOH A 10 410 23 HOH HOH . D 3 HOH A 11 411 9 HOH HOH . D 3 HOH A 12 412 21 HOH HOH . D 3 HOH A 13 413 22 HOH HOH . D 3 HOH A 14 414 30 HOH HOH . D 3 HOH A 15 415 13 HOH HOH . D 3 HOH A 16 416 37 HOH HOH . D 3 HOH A 17 417 3 HOH HOH . D 3 HOH A 18 418 44 HOH HOH . D 3 HOH A 19 419 31 HOH HOH . D 3 HOH A 20 420 26 HOH HOH . D 3 HOH A 21 421 28 HOH HOH . D 3 HOH A 22 422 29 HOH HOH . D 3 HOH A 23 423 32 HOH HOH . D 3 HOH A 24 424 27 HOH HOH . D 3 HOH A 25 425 42 HOH HOH . E 3 HOH B 1 301 17 HOH HOH . E 3 HOH B 2 302 11 HOH HOH . E 3 HOH B 3 303 10 HOH HOH . E 3 HOH B 4 304 7 HOH HOH . E 3 HOH B 5 305 12 HOH HOH . E 3 HOH B 6 306 20 HOH HOH . E 3 HOH B 7 307 2 HOH HOH . E 3 HOH B 8 308 6 HOH HOH . E 3 HOH B 9 309 19 HOH HOH . E 3 HOH B 10 310 8 HOH HOH . E 3 HOH B 11 311 38 HOH HOH . E 3 HOH B 12 312 15 HOH HOH . E 3 HOH B 13 313 43 HOH HOH . E 3 HOH B 14 314 4 HOH HOH . E 3 HOH B 15 315 34 HOH HOH . E 3 HOH B 16 316 35 HOH HOH . E 3 HOH B 17 317 36 HOH HOH . E 3 HOH B 18 318 16 HOH HOH . E 3 HOH B 19 319 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 76.132 42.364 8.569 1 70.67 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 77.388 42.502 7.875 1 68.03 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 76.321 41.565 9.859 1 67.93 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 77 42.358 10.836 1 64.88 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 75.002 41.093 10.466 1 66.47 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 75.258 40.139 11.515 1 61.5 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #