data_5TJL # _model_server_result.job_id HwqNP3_5WYqSU1lXfV0CUw _model_server_result.datetime_utc '2024-10-18 16:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5TJL # _exptl.entry_id 5TJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJL _cell.length_a 52.58 _cell.length_b 150.66 _cell.length_c 79.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.58 0 39.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC HSH C1 O1 . O2 HO2 . sing 2 ? 2 3 1 A2G HSH C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B HSH 1 B 1 HSH D 1 BGA 2 n B FUC 2 B 2 FUC D 1 BGA 2 n B A2G 3 B 3 A2G D 1 BGA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 HSH . B HSH 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 sing covale ? covale2 B O3 HSH . B HSH 1 1_555 B C1 A2G . B A2G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing metalc ? metalc1 A O GLY 41 A GLY 98 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc2 A OG1 THR 62 A THR 119 1_555 D HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc3 A SG CYS 227 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A SG CYS 227 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc5 A SG CYS 227 A CYS 284 1_555 E HG HG . A HG 403 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc6 A SD MET 231 A MET 288 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 A OD2 ASP 245 A ASP 302 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.194 ? metalc ? metalc8 C HG HG . A HG 401 1_555 G O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc9 D HG HG . A HG 402 1_555 G O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 F HG HG . A HG 404 1_555 G O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TJL _atom_sites.fract_transf_matrix[1][1] 0.019019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HG A 1 401 1 HG HG . D 3 HG A 1 402 2 HG HG . E 3 HG A 1 403 5 HG HG . F 3 HG A 1 404 8 HG HG . G 4 HOH A 1 501 74 HOH HOH . G 4 HOH A 2 502 62 HOH HOH . G 4 HOH A 3 503 4 HOH HOH . G 4 HOH A 4 504 50 HOH HOH . G 4 HOH A 5 505 49 HOH HOH . G 4 HOH A 6 506 41 HOH HOH . G 4 HOH A 7 507 17 HOH HOH . G 4 HOH A 8 508 53 HOH HOH . G 4 HOH A 9 509 68 HOH HOH . G 4 HOH A 10 510 27 HOH HOH . G 4 HOH A 11 511 8 HOH HOH . G 4 HOH A 12 512 36 HOH HOH . G 4 HOH A 13 513 7 HOH HOH . G 4 HOH A 14 514 20 HOH HOH . G 4 HOH A 15 515 23 HOH HOH . G 4 HOH A 16 516 10 HOH HOH . G 4 HOH A 17 517 21 HOH HOH . G 4 HOH A 18 518 5 HOH HOH . G 4 HOH A 19 519 79 HOH HOH . G 4 HOH A 20 520 39 HOH HOH . G 4 HOH A 21 521 11 HOH HOH . G 4 HOH A 22 522 46 HOH HOH . G 4 HOH A 23 523 83 HOH HOH . G 4 HOH A 24 524 3 HOH HOH . G 4 HOH A 25 525 54 HOH HOH . G 4 HOH A 26 526 45 HOH HOH . G 4 HOH A 27 527 58 HOH HOH . G 4 HOH A 28 528 13 HOH HOH . G 4 HOH A 29 529 35 HOH HOH . G 4 HOH A 30 530 60 HOH HOH . G 4 HOH A 31 531 15 HOH HOH . G 4 HOH A 32 532 28 HOH HOH . G 4 HOH A 33 533 2 HOH HOH . G 4 HOH A 34 534 56 HOH HOH . G 4 HOH A 35 535 34 HOH HOH . G 4 HOH A 36 536 18 HOH HOH . G 4 HOH A 37 537 14 HOH HOH . G 4 HOH A 38 538 48 HOH HOH . G 4 HOH A 39 539 43 HOH HOH . G 4 HOH A 40 540 33 HOH HOH . G 4 HOH A 41 541 32 HOH HOH . G 4 HOH A 42 542 6 HOH HOH . G 4 HOH A 43 543 77 HOH HOH . G 4 HOH A 44 544 31 HOH HOH . G 4 HOH A 45 545 16 HOH HOH . G 4 HOH A 46 546 26 HOH HOH . G 4 HOH A 47 547 59 HOH HOH . G 4 HOH A 48 548 19 HOH HOH . G 4 HOH A 49 549 9 HOH HOH . G 4 HOH A 50 550 55 HOH HOH . G 4 HOH A 51 551 38 HOH HOH . G 4 HOH A 52 552 61 HOH HOH . G 4 HOH A 53 553 12 HOH HOH . G 4 HOH A 54 554 37 HOH HOH . G 4 HOH A 55 555 75 HOH HOH . G 4 HOH A 56 556 52 HOH HOH . G 4 HOH A 57 557 22 HOH HOH . G 4 HOH A 58 558 25 HOH HOH . G 4 HOH A 59 559 29 HOH HOH . G 4 HOH A 60 560 42 HOH HOH . G 4 HOH A 61 561 30 HOH HOH . G 4 HOH A 62 562 57 HOH HOH . G 4 HOH A 63 563 86 HOH HOH . G 4 HOH A 64 564 24 HOH HOH . G 4 HOH A 65 565 44 HOH HOH . G 4 HOH A 66 566 1 HOH HOH . G 4 HOH A 67 567 67 HOH HOH . G 4 HOH A 68 568 73 HOH HOH . G 4 HOH A 69 569 47 HOH HOH . G 4 HOH A 70 570 63 HOH HOH . G 4 HOH A 71 571 51 HOH HOH . G 4 HOH A 72 572 40 HOH HOH . G 4 HOH A 73 573 87 HOH HOH . G 4 HOH A 74 574 64 HOH HOH . G 4 HOH A 75 575 84 HOH HOH . G 4 HOH A 76 576 78 HOH HOH . G 4 HOH A 77 577 65 HOH HOH . G 4 HOH A 78 578 69 HOH HOH . G 4 HOH A 79 579 81 HOH HOH . G 4 HOH A 80 580 85 HOH HOH . G 4 HOH A 81 581 80 HOH HOH . G 4 HOH A 82 582 66 HOH HOH . G 4 HOH A 83 583 72 HOH HOH . G 4 HOH A 84 584 88 HOH HOH . G 4 HOH A 85 585 70 HOH HOH . G 4 HOH A 86 586 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.029 _atom_site.Cartn_y 49.717 _atom_site.Cartn_z 41.256 _atom_site.occupancy 0.45 _atom_site.B_iso_or_equiv 42.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #