data_5TJN # _model_server_result.job_id C8r1fnmg2Qxj0ucrgk7-OQ _model_server_result.datetime_utc '2024-10-19 13:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5TJN # _exptl.entry_id 5TJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJN _cell.length_a 52.67 _cell.length_b 150.03 _cell.length_c 79.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -39.625 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC HSH C1 O1 . O2 HO2 . sing 2 ? 2 3 1 GLA HSH C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B HSH 1 B 1 HSH B 1 BBB 2 n B FUC 2 B 2 FUC B 1 BBB 2 n B GLA 3 B 3 GLA B 1 BBB # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 HSH . B HSH 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing covale ? covale2 B O3 HSH . B HSH 1 1_555 B C1 GLA . B GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 sing # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 332 n n C1 H11 MPD sing 333 n n C1 H12 MPD sing 334 n n C1 H13 MPD sing 335 n n C2 O2 MPD sing 336 n n C2 CM MPD sing 337 n n C2 C3 MPD sing 338 n n O2 HO2 MPD sing 339 n n CM HM1 MPD sing 340 n n CM HM2 MPD sing 341 n n CM HM3 MPD sing 342 n n C3 C4 MPD sing 343 n n C3 H31 MPD sing 344 n n C3 H32 MPD sing 345 n n C4 O4 MPD sing 346 n n C4 C5 MPD sing 347 n n C4 H4 MPD sing 348 n n O4 HO4 MPD sing 349 n n C5 H51 MPD sing 350 n n C5 H52 MPD sing 351 n n C5 H53 MPD sing 352 n n # _atom_sites.entry_id 5TJN _atom_sites.fract_transf_matrix[1][1] 0.018986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 402 1 MPD MPD . D 4 HOH A 1 501 67 HOH HOH . D 4 HOH A 2 502 90 HOH HOH . D 4 HOH A 3 503 77 HOH HOH . D 4 HOH A 4 504 244 HOH HOH . D 4 HOH A 5 505 230 HOH HOH . D 4 HOH A 6 506 215 HOH HOH . D 4 HOH A 7 507 122 HOH HOH . D 4 HOH A 8 508 174 HOH HOH . D 4 HOH A 9 509 199 HOH HOH . D 4 HOH A 10 510 115 HOH HOH . D 4 HOH A 11 511 43 HOH HOH . D 4 HOH A 12 512 192 HOH HOH . D 4 HOH A 13 513 128 HOH HOH . D 4 HOH A 14 514 130 HOH HOH . D 4 HOH A 15 515 132 HOH HOH . D 4 HOH A 16 516 162 HOH HOH . D 4 HOH A 17 517 147 HOH HOH . D 4 HOH A 18 518 195 HOH HOH . D 4 HOH A 19 519 150 HOH HOH . D 4 HOH A 20 520 156 HOH HOH . D 4 HOH A 21 521 44 HOH HOH . D 4 HOH A 22 522 114 HOH HOH . D 4 HOH A 23 523 155 HOH HOH . D 4 HOH A 24 524 73 HOH HOH . D 4 HOH A 25 525 100 HOH HOH . D 4 HOH A 26 526 133 HOH HOH . D 4 HOH A 27 527 203 HOH HOH . D 4 HOH A 28 528 242 HOH HOH . D 4 HOH A 29 529 129 HOH HOH . D 4 HOH A 30 530 11 HOH HOH . D 4 HOH A 31 531 54 HOH HOH . D 4 HOH A 32 532 181 HOH HOH . D 4 HOH A 33 533 126 HOH HOH . D 4 HOH A 34 534 153 HOH HOH . D 4 HOH A 35 535 108 HOH HOH . D 4 HOH A 36 536 224 HOH HOH . D 4 HOH A 37 537 57 HOH HOH . D 4 HOH A 38 538 9 HOH HOH . D 4 HOH A 39 539 34 HOH HOH . D 4 HOH A 40 540 161 HOH HOH . D 4 HOH A 41 541 228 HOH HOH . D 4 HOH A 42 542 6 HOH HOH . D 4 HOH A 43 543 68 HOH HOH . D 4 HOH A 44 544 2 HOH HOH . D 4 HOH A 45 545 29 HOH HOH . D 4 HOH A 46 546 107 HOH HOH . D 4 HOH A 47 547 25 HOH HOH . D 4 HOH A 48 548 87 HOH HOH . D 4 HOH A 49 549 91 HOH HOH . D 4 HOH A 50 550 21 HOH HOH . D 4 HOH A 51 551 141 HOH HOH . D 4 HOH A 52 552 104 HOH HOH . D 4 HOH A 53 553 143 HOH HOH . D 4 HOH A 54 554 200 HOH HOH . D 4 HOH A 55 555 163 HOH HOH . D 4 HOH A 56 556 221 HOH HOH . D 4 HOH A 57 557 186 HOH HOH . D 4 HOH A 58 558 7 HOH HOH . D 4 HOH A 59 559 136 HOH HOH . D 4 HOH A 60 560 48 HOH HOH . D 4 HOH A 61 561 13 HOH HOH . D 4 HOH A 62 562 85 HOH HOH . D 4 HOH A 63 563 17 HOH HOH . D 4 HOH A 64 564 152 HOH HOH . D 4 HOH A 65 565 197 HOH HOH . D 4 HOH A 66 566 175 HOH HOH . D 4 HOH A 67 567 193 HOH HOH . D 4 HOH A 68 568 180 HOH HOH . D 4 HOH A 69 569 70 HOH HOH . D 4 HOH A 70 570 168 HOH HOH . D 4 HOH A 71 571 89 HOH HOH . D 4 HOH A 72 572 121 HOH HOH . D 4 HOH A 73 573 103 HOH HOH . D 4 HOH A 74 574 23 HOH HOH . D 4 HOH A 75 575 105 HOH HOH . D 4 HOH A 76 576 79 HOH HOH . D 4 HOH A 77 577 117 HOH HOH . D 4 HOH A 78 578 59 HOH HOH . D 4 HOH A 79 579 42 HOH HOH . D 4 HOH A 80 580 52 HOH HOH . D 4 HOH A 81 581 220 HOH HOH . D 4 HOH A 82 582 139 HOH HOH . D 4 HOH A 83 583 10 HOH HOH . D 4 HOH A 84 584 76 HOH HOH . D 4 HOH A 85 585 27 HOH HOH . D 4 HOH A 86 586 31 HOH HOH . D 4 HOH A 87 587 5 HOH HOH . D 4 HOH A 88 588 178 HOH HOH . D 4 HOH A 89 589 191 HOH HOH . D 4 HOH A 90 590 41 HOH HOH . D 4 HOH A 91 591 50 HOH HOH . D 4 HOH A 92 592 235 HOH HOH . D 4 HOH A 93 593 12 HOH HOH . D 4 HOH A 94 594 51 HOH HOH . D 4 HOH A 95 595 212 HOH HOH . D 4 HOH A 96 596 176 HOH HOH . D 4 HOH A 97 597 102 HOH HOH . D 4 HOH A 98 598 66 HOH HOH . D 4 HOH A 99 599 127 HOH HOH . D 4 HOH A 100 600 214 HOH HOH . D 4 HOH A 101 601 37 HOH HOH . D 4 HOH A 102 602 36 HOH HOH . D 4 HOH A 103 603 88 HOH HOH . D 4 HOH A 104 604 3 HOH HOH . D 4 HOH A 105 605 109 HOH HOH . D 4 HOH A 106 606 207 HOH HOH . D 4 HOH A 107 607 151 HOH HOH . D 4 HOH A 108 608 49 HOH HOH . D 4 HOH A 109 609 62 HOH HOH . D 4 HOH A 110 610 96 HOH HOH . D 4 HOH A 111 611 4 HOH HOH . D 4 HOH A 112 612 188 HOH HOH . D 4 HOH A 113 613 80 HOH HOH . D 4 HOH A 114 614 131 HOH HOH . D 4 HOH A 115 615 213 HOH HOH . D 4 HOH A 116 616 8 HOH HOH . D 4 HOH A 117 617 22 HOH HOH . D 4 HOH A 118 618 55 HOH HOH . D 4 HOH A 119 619 177 HOH HOH . D 4 HOH A 120 620 110 HOH HOH . D 4 HOH A 121 621 18 HOH HOH . D 4 HOH A 122 622 172 HOH HOH . D 4 HOH A 123 623 38 HOH HOH . D 4 HOH A 124 624 232 HOH HOH . D 4 HOH A 125 625 72 HOH HOH . D 4 HOH A 126 626 39 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 209 HOH HOH . D 4 HOH A 129 629 169 HOH HOH . D 4 HOH A 130 630 106 HOH HOH . D 4 HOH A 131 631 82 HOH HOH . D 4 HOH A 132 632 225 HOH HOH . D 4 HOH A 133 633 93 HOH HOH . D 4 HOH A 134 634 222 HOH HOH . D 4 HOH A 135 635 227 HOH HOH . D 4 HOH A 136 636 166 HOH HOH . D 4 HOH A 137 637 184 HOH HOH . D 4 HOH A 138 638 95 HOH HOH . D 4 HOH A 139 639 165 HOH HOH . D 4 HOH A 140 640 58 HOH HOH . D 4 HOH A 141 641 26 HOH HOH . D 4 HOH A 142 642 120 HOH HOH . D 4 HOH A 143 643 113 HOH HOH . D 4 HOH A 144 644 53 HOH HOH . D 4 HOH A 145 645 1 HOH HOH . D 4 HOH A 146 646 69 HOH HOH . D 4 HOH A 147 647 83 HOH HOH . D 4 HOH A 148 648 86 HOH HOH . D 4 HOH A 149 649 125 HOH HOH . D 4 HOH A 150 650 206 HOH HOH . D 4 HOH A 151 651 63 HOH HOH . D 4 HOH A 152 652 98 HOH HOH . D 4 HOH A 153 653 204 HOH HOH . D 4 HOH A 154 654 237 HOH HOH . D 4 HOH A 155 655 35 HOH HOH . D 4 HOH A 156 656 223 HOH HOH . D 4 HOH A 157 657 47 HOH HOH . D 4 HOH A 158 658 28 HOH HOH . D 4 HOH A 159 659 171 HOH HOH . D 4 HOH A 160 660 116 HOH HOH . D 4 HOH A 161 661 81 HOH HOH . D 4 HOH A 162 662 145 HOH HOH . D 4 HOH A 163 663 101 HOH HOH . D 4 HOH A 164 664 92 HOH HOH . D 4 HOH A 165 665 32 HOH HOH . D 4 HOH A 166 666 56 HOH HOH . D 4 HOH A 167 667 148 HOH HOH . D 4 HOH A 168 668 14 HOH HOH . D 4 HOH A 169 669 71 HOH HOH . D 4 HOH A 170 670 179 HOH HOH . D 4 HOH A 171 671 229 HOH HOH . D 4 HOH A 172 672 119 HOH HOH . D 4 HOH A 173 673 61 HOH HOH . D 4 HOH A 174 674 33 HOH HOH . D 4 HOH A 175 675 64 HOH HOH . D 4 HOH A 176 676 75 HOH HOH . D 4 HOH A 177 677 111 HOH HOH . D 4 HOH A 178 678 20 HOH HOH . D 4 HOH A 179 679 154 HOH HOH . D 4 HOH A 180 680 124 HOH HOH . D 4 HOH A 181 681 45 HOH HOH . D 4 HOH A 182 682 40 HOH HOH . D 4 HOH A 183 683 94 HOH HOH . D 4 HOH A 184 684 15 HOH HOH . D 4 HOH A 185 685 202 HOH HOH . D 4 HOH A 186 686 60 HOH HOH . D 4 HOH A 187 687 189 HOH HOH . D 4 HOH A 188 688 210 HOH HOH . D 4 HOH A 189 689 74 HOH HOH . D 4 HOH A 190 690 118 HOH HOH . D 4 HOH A 191 691 198 HOH HOH . D 4 HOH A 192 692 158 HOH HOH . D 4 HOH A 193 693 24 HOH HOH . D 4 HOH A 194 694 159 HOH HOH . D 4 HOH A 195 695 187 HOH HOH . D 4 HOH A 196 696 140 HOH HOH . D 4 HOH A 197 697 146 HOH HOH . D 4 HOH A 198 698 164 HOH HOH . D 4 HOH A 199 699 138 HOH HOH . D 4 HOH A 200 700 157 HOH HOH . D 4 HOH A 201 701 134 HOH HOH . D 4 HOH A 202 702 167 HOH HOH . D 4 HOH A 203 703 84 HOH HOH . D 4 HOH A 204 704 65 HOH HOH . D 4 HOH A 205 705 123 HOH HOH . D 4 HOH A 206 706 208 HOH HOH . D 4 HOH A 207 707 99 HOH HOH . D 4 HOH A 208 708 137 HOH HOH . D 4 HOH A 209 709 233 HOH HOH . D 4 HOH A 210 710 236 HOH HOH . D 4 HOH A 211 711 190 HOH HOH . D 4 HOH A 212 712 234 HOH HOH . D 4 HOH A 213 713 97 HOH HOH . D 4 HOH A 214 714 170 HOH HOH . D 4 HOH A 215 715 211 HOH HOH . D 4 HOH A 216 716 19 HOH HOH . D 4 HOH A 217 717 218 HOH HOH . D 4 HOH A 218 718 194 HOH HOH . D 4 HOH A 219 719 173 HOH HOH . D 4 HOH A 220 720 196 HOH HOH . D 4 HOH A 221 721 46 HOH HOH . D 4 HOH A 222 722 30 HOH HOH . D 4 HOH A 223 723 231 HOH HOH . D 4 HOH A 224 724 226 HOH HOH . D 4 HOH A 225 725 183 HOH HOH . D 4 HOH A 226 726 112 HOH HOH . D 4 HOH A 227 727 185 HOH HOH . D 4 HOH A 228 728 243 HOH HOH . D 4 HOH A 229 729 160 HOH HOH . D 4 HOH A 230 730 205 HOH HOH . D 4 HOH A 231 731 135 HOH HOH . D 4 HOH A 232 732 201 HOH HOH . D 4 HOH A 233 733 240 HOH HOH . D 4 HOH A 234 734 239 HOH HOH . D 4 HOH A 235 735 216 HOH HOH . D 4 HOH A 236 736 78 HOH HOH . D 4 HOH A 237 737 149 HOH HOH . D 4 HOH A 238 738 217 HOH HOH . D 4 HOH A 239 739 219 HOH HOH . D 4 HOH A 240 740 238 HOH HOH . D 4 HOH A 241 741 144 HOH HOH . D 4 HOH A 242 742 241 HOH HOH . D 4 HOH A 243 743 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -28.973 -19.603 -17.928 0.8 25.2 ? C1 MPD 402 A 1 HETATM 2 C C2 MPD . . . C 3 -29.322 -19.431 -16.454 0.8 23.38 ? C2 MPD 402 A 1 HETATM 3 O O2 MPD . . . C 3 -28.192 -19.93 -15.697 0.8 26.97 ? O2 MPD 402 A 1 HETATM 4 C CM MPD . . . C 3 -29.47 -17.936 -16.146 0.8 22.34 ? CM MPD 402 A 1 HETATM 5 C C3 MPD . . . C 3 -30.631 -20.169 -16.083 0.8 24.08 ? C3 MPD 402 A 1 HETATM 6 C C4 MPD . . . C 3 -30.818 -21.567 -16.688 0.8 24.47 ? C4 MPD 402 A 1 HETATM 7 O O4 MPD . . . C 3 -29.839 -22.504 -16.199 0.8 23.48 ? O4 MPD 402 A 1 HETATM 8 C C5 MPD . . . C 3 -32.179 -22.168 -16.344 0.8 23.55 ? C5 MPD 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #