data_5TJO # _model_server_result.job_id M6lOjJbgd1lvjH2Ew8jCuw _model_server_result.datetime_utc '2024-10-18 15:29:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5TJO # _exptl.entry_id 5TJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJO _cell.length_a 52.71 _cell.length_b 150.65 _cell.length_c 79.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.71 0 39.59 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC HSH C1 O1 . O2 HO2 . sing 2 ? 2 3 1 GLA HSH C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B HSH 1 B 1 HSH D 1 BBB 2 n B FUC 2 B 2 FUC D 1 BBB 2 n B GLA 3 B 3 GLA D 1 BBB # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O2 HSH . B HSH 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing covale ? covale2 B O3 HSH . B HSH 1 1_555 B C1 GLA . B GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing metalc ? metalc1 A O GLY 41 A GLY 98 1_555 H HG HG . A HG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc2 A OG1 THR 62 A THR 119 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 A OG1 THR 62 A THR 119 1_555 G HG HG . A HG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc4 A SG CYS 227 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc5 A SG CYS 227 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc6 A SG CYS 227 A CYS 284 1_555 D HG HG . A HG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc7 A SG CYS 227 A CYS 284 1_555 E HG HG . A HG 403 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 A SD MET 231 A MET 288 1_555 D HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 A OD2 ASP 245 A ASP 302 1_555 D HG HG . A HG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc10 A O HIS 248 A HIS 305 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc11 C HG HG . A HG 401 1_555 I O HOH . A HOH 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 E HG HG . A HG 403 1_555 I O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc13 F HG HG . A HG 404 1_555 I O HOH . A HOH 683 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 G HG HG . A HG 405 1_555 I O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TJO _atom_sites.fract_transf_matrix[1][1] 0.018972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HG A 1 401 1 HG HG . D 3 HG A 1 402 2 HG HG . E 3 HG A 1 403 3 HG HG . F 3 HG A 1 404 4 HG HG . G 3 HG A 1 405 5 HG HG . H 3 HG A 1 406 6 HG HG . I 4 HOH A 1 501 105 HOH HOH . I 4 HOH A 2 502 101 HOH HOH . I 4 HOH A 3 503 136 HOH HOH . I 4 HOH A 4 504 133 HOH HOH . I 4 HOH A 5 505 175 HOH HOH . I 4 HOH A 6 506 54 HOH HOH . I 4 HOH A 7 507 82 HOH HOH . I 4 HOH A 8 508 155 HOH HOH . I 4 HOH A 9 509 124 HOH HOH . I 4 HOH A 10 510 109 HOH HOH . I 4 HOH A 11 511 27 HOH HOH . I 4 HOH A 12 512 44 HOH HOH . I 4 HOH A 13 513 127 HOH HOH . I 4 HOH A 14 514 53 HOH HOH . I 4 HOH A 15 515 167 HOH HOH . I 4 HOH A 16 516 108 HOH HOH . I 4 HOH A 17 517 95 HOH HOH . I 4 HOH A 18 518 85 HOH HOH . I 4 HOH A 19 519 10 HOH HOH . I 4 HOH A 20 520 134 HOH HOH . I 4 HOH A 21 521 36 HOH HOH . I 4 HOH A 22 522 102 HOH HOH . I 4 HOH A 23 523 88 HOH HOH . I 4 HOH A 24 524 29 HOH HOH . I 4 HOH A 25 525 24 HOH HOH . I 4 HOH A 26 526 138 HOH HOH . I 4 HOH A 27 527 18 HOH HOH . I 4 HOH A 28 528 106 HOH HOH . I 4 HOH A 29 529 187 HOH HOH . I 4 HOH A 30 530 162 HOH HOH . I 4 HOH A 31 531 131 HOH HOH . I 4 HOH A 32 532 142 HOH HOH . I 4 HOH A 33 533 111 HOH HOH . I 4 HOH A 34 534 96 HOH HOH . I 4 HOH A 35 535 169 HOH HOH . I 4 HOH A 36 536 62 HOH HOH . I 4 HOH A 37 537 14 HOH HOH . I 4 HOH A 38 538 21 HOH HOH . I 4 HOH A 39 539 139 HOH HOH . I 4 HOH A 40 540 79 HOH HOH . I 4 HOH A 41 541 26 HOH HOH . I 4 HOH A 42 542 94 HOH HOH . I 4 HOH A 43 543 99 HOH HOH . I 4 HOH A 44 544 61 HOH HOH . I 4 HOH A 45 545 5 HOH HOH . I 4 HOH A 46 546 165 HOH HOH . I 4 HOH A 47 547 173 HOH HOH . I 4 HOH A 48 548 78 HOH HOH . I 4 HOH A 49 549 135 HOH HOH . I 4 HOH A 50 550 69 HOH HOH . I 4 HOH A 51 551 104 HOH HOH . I 4 HOH A 52 552 181 HOH HOH . I 4 HOH A 53 553 107 HOH HOH . I 4 HOH A 54 554 117 HOH HOH . I 4 HOH A 55 555 12 HOH HOH . I 4 HOH A 56 556 81 HOH HOH . I 4 HOH A 57 557 122 HOH HOH . I 4 HOH A 58 558 129 HOH HOH . I 4 HOH A 59 559 97 HOH HOH . I 4 HOH A 60 560 73 HOH HOH . I 4 HOH A 61 561 152 HOH HOH . I 4 HOH A 62 562 156 HOH HOH . I 4 HOH A 63 563 92 HOH HOH . I 4 HOH A 64 564 35 HOH HOH . I 4 HOH A 65 565 38 HOH HOH . I 4 HOH A 66 566 71 HOH HOH . I 4 HOH A 67 567 72 HOH HOH . I 4 HOH A 68 568 120 HOH HOH . I 4 HOH A 69 569 17 HOH HOH . I 4 HOH A 70 570 39 HOH HOH . I 4 HOH A 71 571 1 HOH HOH . I 4 HOH A 72 572 30 HOH HOH . I 4 HOH A 73 573 11 HOH HOH . I 4 HOH A 74 574 52 HOH HOH . I 4 HOH A 75 575 143 HOH HOH . I 4 HOH A 76 576 42 HOH HOH . I 4 HOH A 77 577 130 HOH HOH . I 4 HOH A 78 578 60 HOH HOH . I 4 HOH A 79 579 19 HOH HOH . I 4 HOH A 80 580 34 HOH HOH . I 4 HOH A 81 581 90 HOH HOH . I 4 HOH A 82 582 33 HOH HOH . I 4 HOH A 83 583 174 HOH HOH . I 4 HOH A 84 584 8 HOH HOH . I 4 HOH A 85 585 22 HOH HOH . I 4 HOH A 86 586 178 HOH HOH . I 4 HOH A 87 587 32 HOH HOH . I 4 HOH A 88 588 46 HOH HOH . I 4 HOH A 89 589 121 HOH HOH . I 4 HOH A 90 590 9 HOH HOH . I 4 HOH A 91 591 31 HOH HOH . I 4 HOH A 92 592 66 HOH HOH . I 4 HOH A 93 593 4 HOH HOH . I 4 HOH A 94 594 100 HOH HOH . I 4 HOH A 95 595 185 HOH HOH . I 4 HOH A 96 596 166 HOH HOH . I 4 HOH A 97 597 47 HOH HOH . I 4 HOH A 98 598 28 HOH HOH . I 4 HOH A 99 599 7 HOH HOH . I 4 HOH A 100 600 186 HOH HOH . I 4 HOH A 101 601 126 HOH HOH . I 4 HOH A 102 602 115 HOH HOH . I 4 HOH A 103 603 63 HOH HOH . I 4 HOH A 104 604 20 HOH HOH . I 4 HOH A 105 605 13 HOH HOH . I 4 HOH A 106 606 113 HOH HOH . I 4 HOH A 107 607 76 HOH HOH . I 4 HOH A 108 608 2 HOH HOH . I 4 HOH A 109 609 58 HOH HOH . I 4 HOH A 110 610 182 HOH HOH . I 4 HOH A 111 611 49 HOH HOH . I 4 HOH A 112 612 160 HOH HOH . I 4 HOH A 113 613 23 HOH HOH . I 4 HOH A 114 614 154 HOH HOH . I 4 HOH A 115 615 64 HOH HOH . I 4 HOH A 116 616 87 HOH HOH . I 4 HOH A 117 617 50 HOH HOH . I 4 HOH A 118 618 184 HOH HOH . I 4 HOH A 119 619 132 HOH HOH . I 4 HOH A 120 620 25 HOH HOH . I 4 HOH A 121 621 45 HOH HOH . I 4 HOH A 122 622 91 HOH HOH . I 4 HOH A 123 623 70 HOH HOH . I 4 HOH A 124 624 68 HOH HOH . I 4 HOH A 125 625 128 HOH HOH . I 4 HOH A 126 626 43 HOH HOH . I 4 HOH A 127 627 6 HOH HOH . I 4 HOH A 128 628 140 HOH HOH . I 4 HOH A 129 629 41 HOH HOH . I 4 HOH A 130 630 172 HOH HOH . I 4 HOH A 131 631 125 HOH HOH . I 4 HOH A 132 632 55 HOH HOH . I 4 HOH A 133 633 75 HOH HOH . I 4 HOH A 134 634 93 HOH HOH . I 4 HOH A 135 635 74 HOH HOH . I 4 HOH A 136 636 57 HOH HOH . I 4 HOH A 137 637 67 HOH HOH . I 4 HOH A 138 638 56 HOH HOH . I 4 HOH A 139 639 83 HOH HOH . I 4 HOH A 140 640 110 HOH HOH . I 4 HOH A 141 641 141 HOH HOH . I 4 HOH A 142 642 116 HOH HOH . I 4 HOH A 143 643 59 HOH HOH . I 4 HOH A 144 644 118 HOH HOH . I 4 HOH A 145 645 179 HOH HOH . I 4 HOH A 146 646 16 HOH HOH . I 4 HOH A 147 647 40 HOH HOH . I 4 HOH A 148 648 15 HOH HOH . I 4 HOH A 149 649 114 HOH HOH . I 4 HOH A 150 650 137 HOH HOH . I 4 HOH A 151 651 86 HOH HOH . I 4 HOH A 152 652 98 HOH HOH . I 4 HOH A 153 653 123 HOH HOH . I 4 HOH A 154 654 80 HOH HOH . I 4 HOH A 155 655 3 HOH HOH . I 4 HOH A 156 656 197 HOH HOH . I 4 HOH A 157 657 48 HOH HOH . I 4 HOH A 158 658 77 HOH HOH . I 4 HOH A 159 659 37 HOH HOH . I 4 HOH A 160 660 51 HOH HOH . I 4 HOH A 161 661 119 HOH HOH . I 4 HOH A 162 662 84 HOH HOH . I 4 HOH A 163 663 193 HOH HOH . I 4 HOH A 164 664 147 HOH HOH . I 4 HOH A 165 665 164 HOH HOH . I 4 HOH A 166 666 89 HOH HOH . I 4 HOH A 167 667 65 HOH HOH . I 4 HOH A 168 668 200 HOH HOH . I 4 HOH A 169 669 112 HOH HOH . I 4 HOH A 170 670 177 HOH HOH . I 4 HOH A 171 671 103 HOH HOH . I 4 HOH A 172 672 151 HOH HOH . I 4 HOH A 173 673 144 HOH HOH . I 4 HOH A 174 674 194 HOH HOH . I 4 HOH A 175 675 149 HOH HOH . I 4 HOH A 176 676 159 HOH HOH . I 4 HOH A 177 677 201 HOH HOH . I 4 HOH A 178 678 189 HOH HOH . I 4 HOH A 179 679 168 HOH HOH . I 4 HOH A 180 680 198 HOH HOH . I 4 HOH A 181 681 146 HOH HOH . I 4 HOH A 182 682 192 HOH HOH . I 4 HOH A 183 683 190 HOH HOH . I 4 HOH A 184 684 199 HOH HOH . I 4 HOH A 185 685 163 HOH HOH . I 4 HOH A 186 686 195 HOH HOH . I 4 HOH A 187 687 158 HOH HOH . I 4 HOH A 188 688 196 HOH HOH . I 4 HOH A 189 689 145 HOH HOH . I 4 HOH A 190 690 148 HOH HOH . I 4 HOH A 191 691 170 HOH HOH . I 4 HOH A 192 692 150 HOH HOH . I 4 HOH A 193 693 183 HOH HOH . I 4 HOH A 194 694 153 HOH HOH . I 4 HOH A 195 695 157 HOH HOH . I 4 HOH A 196 696 191 HOH HOH . I 4 HOH A 197 697 176 HOH HOH . I 4 HOH A 198 698 161 HOH HOH . I 4 HOH A 199 699 180 HOH HOH . I 4 HOH A 200 700 171 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.963 _atom_site.Cartn_y 48.753 _atom_site.Cartn_z 41.173 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 25.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #