data_5TJR # _model_server_result.job_id hgHn2_MJAifbqHVe-EdlzQ _model_server_result.datetime_utc '2024-11-22 18:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5TJR # _exptl.entry_id 5TJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJR _cell.length_a 115.891 _cell.length_b 156.631 _cell.length_c 192.246 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5TJR _atom_sites.fract_transf_matrix[1][1] 0.008629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 501 517 ADP ADP . H 2 ADP B 1 501 517 ADP ADP . I 2 ADP D 1 501 517 ADP ADP . J 2 ADP E 1 501 517 ADP ADP . K 2 ADP F 1 501 517 ADP ADP . L 3 HOH A 1 601 15 HOH HOH . L 3 HOH A 2 602 16 HOH HOH . L 3 HOH A 3 603 14 HOH HOH . M 3 HOH B 1 601 9 HOH HOH . M 3 HOH B 2 602 2 HOH HOH . M 3 HOH B 3 603 5 HOH HOH . M 3 HOH B 4 604 10 HOH HOH . M 3 HOH B 5 605 3 HOH HOH . N 3 HOH C 1 501 7 HOH HOH . N 3 HOH C 2 502 8 HOH HOH . O 3 HOH D 1 601 1 HOH HOH . O 3 HOH D 2 602 13 HOH HOH . O 3 HOH D 3 603 11 HOH HOH . P 3 HOH E 1 601 6 HOH HOH . Q 3 HOH F 1 601 12 HOH HOH . Q 3 HOH F 2 602 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 2 72.519 67.859 -87.819 0.8 81.27 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . G 2 72.801 68.391 -89.205 0.8 83.64 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . G 2 72.754 68.841 -86.693 0.8 76.69 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . G 2 71.241 67.071 -87.789 0.8 79.95 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . G 2 74.577 65.998 -88.521 0.8 89.92 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . G 2 75.182 67.028 -89.445 0.8 94.68 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . G 2 73.889 64.767 -88.991 0.8 78.92 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . G 2 73.605 66.725 -87.464 0.8 88.94 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . G 2 75.781 65.457 -87.625 0.8 95.29 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . G 2 75.955 65.969 -86.3 0.8 100.32 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . G 2 77.434 66.055 -85.951 0.8 98.28 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . G 2 78.289 65.275 -86.805 0.8 100.74 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . G 2 77.915 67.499 -86.025 0.8 98.15 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . G 2 78.121 67.944 -84.688 0.8 87.3 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . G 2 79.164 67.487 -86.887 0.8 99.79 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . G 2 80.275 68.148 -86.284 0.8 105.72 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . G 2 79.476 66.01 -87.086 0.8 98.19 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . G 2 79.882 65.645 -88.444 0.8 91.31 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . G 2 79.664 66.285 -89.608 0.8 94.22 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . G 2 80.224 65.575 -90.626 0.8 100.83 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . G 2 80.807 64.469 -90.109 0.8 96.47 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . G 2 81.554 63.27 -90.603 0.8 94.1 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . G 2 81.842 63.082 -91.904 0.8 102.44 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . G 2 81.962 62.346 -89.718 0.8 80.94 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . G 2 81.7 62.496 -88.41 0.8 83.14 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . G 2 81.008 63.54 -87.883 0.8 79.5 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . G 2 80.551 64.532 -88.667 0.8 87.24 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #