data_5TJR # _model_server_result.job_id KXGRtmbL_QcyTycY8LTT0g _model_server_result.datetime_utc '2024-11-22 17:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 5TJR # _exptl.entry_id 5TJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TJR _cell.length_a 115.891 _cell.length_b 156.631 _cell.length_c 192.246 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5TJR _atom_sites.fract_transf_matrix[1][1] 0.008629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 501 517 ADP ADP . H 2 ADP B 1 501 517 ADP ADP . I 2 ADP D 1 501 517 ADP ADP . J 2 ADP E 1 501 517 ADP ADP . K 2 ADP F 1 501 517 ADP ADP . L 3 HOH A 1 601 15 HOH HOH . L 3 HOH A 2 602 16 HOH HOH . L 3 HOH A 3 603 14 HOH HOH . M 3 HOH B 1 601 9 HOH HOH . M 3 HOH B 2 602 2 HOH HOH . M 3 HOH B 3 603 5 HOH HOH . M 3 HOH B 4 604 10 HOH HOH . M 3 HOH B 5 605 3 HOH HOH . N 3 HOH C 1 501 7 HOH HOH . N 3 HOH C 2 502 8 HOH HOH . O 3 HOH D 1 601 1 HOH HOH . O 3 HOH D 2 602 13 HOH HOH . O 3 HOH D 3 603 11 HOH HOH . P 3 HOH E 1 601 6 HOH HOH . Q 3 HOH F 1 601 12 HOH HOH . Q 3 HOH F 2 602 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . J 2 14.872 71.703 -43.202 0.7 98.06 ? PB ADP 501 E 1 HETATM 2 O O1B ADP . . . J 2 15.57 71.961 -44.529 0.7 83.71 ? O1B ADP 501 E 1 HETATM 3 O O2B ADP . . . J 2 15.781 71.658 -42 0.7 93.26 ? O2B ADP 501 E 1 HETATM 4 O O3B ADP . . . J 2 13.683 72.592 -42.946 0.7 99.17 ? O3B ADP 501 E 1 HETATM 5 P PA ADP . . . J 2 12.989 69.801 -44.224 0.7 96.59 ? PA ADP 501 E 1 HETATM 6 O O1A ADP . . . J 2 12.77 68.324 -44.107 0.7 87.68 ? O1A ADP 501 E 1 HETATM 7 O O2A ADP . . . J 2 11.816 70.707 -43.945 0.7 91.5 ? O2A ADP 501 E 1 HETATM 8 O O3A ADP . . . J 2 14.256 70.198 -43.285 0.7 94.54 ? O3A ADP 501 E 1 HETATM 9 O O5' ADP . . . J 2 13.503 70.174 -45.712 0.7 107.01 ? O5' ADP 501 E 1 HETATM 10 C C5' ADP . . . J 2 14.447 69.362 -46.425 0.7 108.59 ? C5' ADP 501 E 1 HETATM 11 C C4' ADP . . . J 2 14.5 69.677 -47.93 0.7 105.7 ? C4' ADP 501 E 1 HETATM 12 O O4' ADP . . . J 2 13.447 69.047 -48.676 0.7 103.22 ? O4' ADP 501 E 1 HETATM 13 C C3' ADP . . . J 2 14.437 71.161 -48.247 0.7 101.91 ? C3' ADP 501 E 1 HETATM 14 O O3' ADP . . . J 2 15.67 71.519 -48.868 0.7 100.59 ? O3' ADP 501 E 1 HETATM 15 C C2' ADP . . . J 2 13.254 71.365 -49.163 0.7 97.85 ? C2' ADP 501 E 1 HETATM 16 O O2' ADP . . . J 2 13.649 71.973 -50.374 0.7 95.91 ? O2' ADP 501 E 1 HETATM 17 C C1' ADP . . . J 2 12.667 69.981 -49.428 0.7 97.01 ? C1' ADP 501 E 1 HETATM 18 N N9 ADP . . . J 2 11.255 69.843 -48.995 0.7 97.15 ? N9 ADP 501 E 1 HETATM 19 C C8 ADP . . . J 2 10.599 70.685 -48.161 0.7 96.79 ? C8 ADP 501 E 1 HETATM 20 N N7 ADP . . . J 2 9.328 70.269 -47.96 0.7 95.78 ? N7 ADP 501 E 1 HETATM 21 C C5 ADP . . . J 2 9.144 69.139 -48.656 0.7 94.21 ? C5 ADP 501 E 1 HETATM 22 C C6 ADP . . . J 2 8.017 68.193 -48.857 0.7 92.76 ? C6 ADP 501 E 1 HETATM 23 N N6 ADP . . . J 2 6.843 68.43 -48.241 0.7 99.55 ? N6 ADP 501 E 1 HETATM 24 N N1 ADP . . . J 2 8.187 67.11 -49.656 0.7 87.6 ? N1 ADP 501 E 1 HETATM 25 C C2 ADP . . . J 2 9.372 66.895 -50.256 0.7 86.99 ? C2 ADP 501 E 1 HETATM 26 N N3 ADP . . . J 2 10.449 67.716 -50.097 0.7 85.67 ? N3 ADP 501 E 1 HETATM 27 C C4 ADP . . . J 2 10.414 68.846 -49.335 0.7 92.49 ? C4 ADP 501 E 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #