data_5TJY # _model_server_result.job_id CHUrHXFVbcW0xZWEw9EdFA _model_server_result.datetime_utc '2024-12-16 11:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tjy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5TJY # _exptl.entry_id 5TJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TJY _cell.length_a 66.421 _cell.length_b 66.421 _cell.length_c 249.363 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 21 A VAL 20 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A O ALA 22 A ALA 21 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A O ALA 24 A ALA 23 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 A O LEU 27 A LEU 26 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 H NA NA . A NA 307 1_555 P O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc6 H NA NA . A NA 307 1_555 P O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 352 n n O1 HO1 PG4 sing 353 n n C1 C2 PG4 sing 354 n n C1 H11 PG4 sing 355 n n C1 H12 PG4 sing 356 n n C2 O2 PG4 sing 357 n n C2 H21 PG4 sing 358 n n C2 H22 PG4 sing 359 n n O2 C3 PG4 sing 360 n n C3 C4 PG4 sing 361 n n C3 H31 PG4 sing 362 n n C3 H32 PG4 sing 363 n n C4 O3 PG4 sing 364 n n C4 H41 PG4 sing 365 n n C4 H42 PG4 sing 366 n n O3 C5 PG4 sing 367 n n C5 C6 PG4 sing 368 n n C5 H51 PG4 sing 369 n n C5 H52 PG4 sing 370 n n C6 O4 PG4 sing 371 n n C6 H61 PG4 sing 372 n n C6 H62 PG4 sing 373 n n O4 C7 PG4 sing 374 n n C7 C8 PG4 sing 375 n n C7 H71 PG4 sing 376 n n C7 H72 PG4 sing 377 n n C8 O5 PG4 sing 378 n n C8 H81 PG4 sing 379 n n C8 H82 PG4 sing 380 n n O5 HO5 PG4 sing 381 n n # _atom_sites.entry_id 5TJY _atom_sites.fract_transf_matrix[1][1] 0.015055 _atom_sites.fract_transf_matrix[1][2] 0.008692 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017385 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDC A 1 301 1 PDC PDC . C 3 NAI A 1 302 1 NAI NDP . D 4 SO4 A 1 303 2 SO4 SO4 . E 5 BEZ A 1 304 1 BEZ BEZ . F 6 IMD A 1 305 1 IMD IMD . G 7 PG4 A 1 306 1 PG4 PG4 . H 8 NA A 1 307 1 NA NA . I 9 EDO A 1 308 1 EDO EDO . J 9 EDO A 1 309 2 EDO EDO . K 9 EDO A 1 310 1 EDO EDO . L 9 EDO A 1 311 1 EDO EDO . M 9 EDO A 1 312 1 EDO EDO . N 9 EDO A 1 313 1 EDO EDO . O 10 CL A 1 314 1 CL CL . P 11 HOH A 1 401 45 HOH HOH . P 11 HOH A 2 402 96 HOH HOH . P 11 HOH A 3 403 79 HOH HOH . P 11 HOH A 4 404 1 HOH HOH . P 11 HOH A 5 405 9 HOH HOH . P 11 HOH A 6 406 30 HOH HOH . P 11 HOH A 7 407 38 HOH HOH . P 11 HOH A 8 408 18 HOH HOH . P 11 HOH A 9 409 22 HOH HOH . P 11 HOH A 10 410 8 HOH HOH . P 11 HOH A 11 411 130 HOH HOH . P 11 HOH A 12 412 83 HOH HOH . P 11 HOH A 13 413 2 HOH HOH . P 11 HOH A 14 414 76 HOH HOH . P 11 HOH A 15 415 26 HOH HOH . P 11 HOH A 16 416 16 HOH HOH . P 11 HOH A 17 417 39 HOH HOH . P 11 HOH A 18 418 75 HOH HOH . P 11 HOH A 19 419 21 HOH HOH . P 11 HOH A 20 420 7 HOH HOH . P 11 HOH A 21 421 52 HOH HOH . P 11 HOH A 22 422 5 HOH HOH . P 11 HOH A 23 423 131 HOH HOH . P 11 HOH A 24 424 54 HOH HOH . P 11 HOH A 25 425 68 HOH HOH . P 11 HOH A 26 426 58 HOH HOH . P 11 HOH A 27 427 69 HOH HOH . P 11 HOH A 28 428 84 HOH HOH . P 11 HOH A 29 429 50 HOH HOH . P 11 HOH A 30 430 138 HOH HOH . P 11 HOH A 31 431 35 HOH HOH . P 11 HOH A 32 432 10 HOH HOH . P 11 HOH A 33 433 19 HOH HOH . P 11 HOH A 34 434 29 HOH HOH . P 11 HOH A 35 435 13 HOH HOH . P 11 HOH A 36 436 57 HOH HOH . P 11 HOH A 37 437 24 HOH HOH . P 11 HOH A 38 438 31 HOH HOH . P 11 HOH A 39 439 120 HOH HOH . P 11 HOH A 40 440 53 HOH HOH . P 11 HOH A 41 441 4 HOH HOH . P 11 HOH A 42 442 86 HOH HOH . P 11 HOH A 43 443 25 HOH HOH . P 11 HOH A 44 444 136 HOH HOH . P 11 HOH A 45 445 107 HOH HOH . P 11 HOH A 46 446 70 HOH HOH . P 11 HOH A 47 447 6 HOH HOH . P 11 HOH A 48 448 87 HOH HOH . P 11 HOH A 49 449 114 HOH HOH . P 11 HOH A 50 450 113 HOH HOH . P 11 HOH A 51 451 81 HOH HOH . P 11 HOH A 52 452 43 HOH HOH . P 11 HOH A 53 453 116 HOH HOH . P 11 HOH A 54 454 49 HOH HOH . P 11 HOH A 55 455 48 HOH HOH . P 11 HOH A 56 456 125 HOH HOH . P 11 HOH A 57 457 34 HOH HOH . P 11 HOH A 58 458 126 HOH HOH . P 11 HOH A 59 459 67 HOH HOH . P 11 HOH A 60 460 82 HOH HOH . P 11 HOH A 61 461 60 HOH HOH . P 11 HOH A 62 462 106 HOH HOH . P 11 HOH A 63 463 91 HOH HOH . P 11 HOH A 64 464 89 HOH HOH . P 11 HOH A 65 465 17 HOH HOH . P 11 HOH A 66 466 23 HOH HOH . P 11 HOH A 67 467 14 HOH HOH . P 11 HOH A 68 468 137 HOH HOH . P 11 HOH A 69 469 42 HOH HOH . P 11 HOH A 70 470 132 HOH HOH . P 11 HOH A 71 471 127 HOH HOH . P 11 HOH A 72 472 102 HOH HOH . P 11 HOH A 73 473 119 HOH HOH . P 11 HOH A 74 474 20 HOH HOH . P 11 HOH A 75 475 36 HOH HOH . P 11 HOH A 76 476 133 HOH HOH . P 11 HOH A 77 477 110 HOH HOH . P 11 HOH A 78 478 134 HOH HOH . P 11 HOH A 79 479 115 HOH HOH . P 11 HOH A 80 480 66 HOH HOH . P 11 HOH A 81 481 97 HOH HOH . P 11 HOH A 82 482 3 HOH HOH . P 11 HOH A 83 483 15 HOH HOH . P 11 HOH A 84 484 74 HOH HOH . P 11 HOH A 85 485 64 HOH HOH . P 11 HOH A 86 486 33 HOH HOH . P 11 HOH A 87 487 65 HOH HOH . P 11 HOH A 88 488 12 HOH HOH . P 11 HOH A 89 489 109 HOH HOH . P 11 HOH A 90 490 73 HOH HOH . P 11 HOH A 91 491 93 HOH HOH . P 11 HOH A 92 492 11 HOH HOH . P 11 HOH A 93 493 103 HOH HOH . P 11 HOH A 94 494 85 HOH HOH . P 11 HOH A 95 495 71 HOH HOH . P 11 HOH A 96 496 111 HOH HOH . P 11 HOH A 97 497 135 HOH HOH . P 11 HOH A 98 498 77 HOH HOH . P 11 HOH A 99 499 104 HOH HOH . P 11 HOH A 100 500 117 HOH HOH . P 11 HOH A 101 501 101 HOH HOH . P 11 HOH A 102 502 124 HOH HOH . P 11 HOH A 103 503 80 HOH HOH . P 11 HOH A 104 504 78 HOH HOH . P 11 HOH A 105 505 128 HOH HOH . P 11 HOH A 106 506 62 HOH HOH . P 11 HOH A 107 507 46 HOH HOH . P 11 HOH A 108 508 41 HOH HOH . P 11 HOH A 109 509 129 HOH HOH . P 11 HOH A 110 510 55 HOH HOH . P 11 HOH A 111 511 72 HOH HOH . P 11 HOH A 112 512 40 HOH HOH . P 11 HOH A 113 513 37 HOH HOH . P 11 HOH A 114 514 63 HOH HOH . P 11 HOH A 115 515 94 HOH HOH . P 11 HOH A 116 516 105 HOH HOH . P 11 HOH A 117 517 118 HOH HOH . P 11 HOH A 118 518 32 HOH HOH . P 11 HOH A 119 519 100 HOH HOH . P 11 HOH A 120 520 92 HOH HOH . P 11 HOH A 121 521 112 HOH HOH . P 11 HOH A 122 522 90 HOH HOH . P 11 HOH A 123 523 139 HOH HOH . P 11 HOH A 124 524 122 HOH HOH . P 11 HOH A 125 525 51 HOH HOH . P 11 HOH A 126 526 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 PG4 . . . G 7 0.625 1.106 -8.303 1 35.34 ? C3 PG4 306 A 1 HETATM 2 C C4 PG4 . . . G 7 1.823 2.024 -7.896 1 48.44 ? C4 PG4 306 A 1 HETATM 3 O O3 PG4 . . . G 7 1.78 2.794 -6.657 1 52.63 ? O3 PG4 306 A 1 HETATM 4 C C5 PG4 . . . G 7 2.532 2.395 -5.481 1 52.42 ? C5 PG4 306 A 1 HETATM 5 C C6 PG4 . . . G 7 2.471 3.503 -4.408 1 58.25 ? C6 PG4 306 A 1 HETATM 6 O O4 PG4 . . . G 7 1.762 3.229 -3.19 1 57 ? O4 PG4 306 A 1 HETATM 7 C C7 PG4 . . . G 7 1.235 4.442 -2.539 1 60.16 ? C7 PG4 306 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #